Wall clock time and date at job start Tue Mar 31 2020 23:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46894 * 109.47002 * 2 1 4 4 C 1.46899 * 110.99819 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46919 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.78210 * 303.21074 * 5 4 3 7 7 C 1.54325 * 110.72125 * 66.45497 * 5 4 3 8 8 N 1.47018 * 107.40412 * 96.24436 * 7 5 4 9 9 C 1.34775 * 125.64993 * 178.90064 * 8 7 5 10 10 O 1.21282 * 119.99810 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00280 * 180.02562 * 9 8 7 12 12 S 1.81005 * 109.47365 * 179.97438 * 11 9 8 13 13 C 1.76201 * 99.99828 * 179.97438 * 12 11 9 14 14 H 1.07990 * 120.00367 * 0.02562 * 13 12 11 15 15 C 1.38806 * 119.99588 * 180.02562 * 13 12 11 16 16 N 1.31632 * 120.00014 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99737 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47380 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46832 * 119.99980 * 17 15 13 20 20 H 1.48499 * 109.47310 * 239.99480 * 17 15 13 21 21 C 1.47426 * 108.70517 * 358.86539 * 8 7 5 22 22 C 1.54914 * 104.82992 * 24.12623 * 21 8 7 23 23 H 1.09004 * 111.00278 * 81.10732 * 22 21 8 24 24 C 1.53000 * 111.00205 * 204.91932 * 22 21 8 25 25 F 1.39896 * 109.47647 * 58.54632 * 24 22 21 26 26 F 1.39899 * 109.46883 * 178.55083 * 24 22 21 27 27 F 1.39903 * 109.46974 * 298.54713 * 24 22 21 28 28 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47060 * 300.00294 * 1 2 3 30 30 H 1.09002 * 109.46960 * 60.00441 * 1 2 3 31 31 H 1.08994 * 109.47060 * 239.99706 * 2 1 3 32 32 H 1.08995 * 109.46910 * 119.99936 * 2 1 3 33 33 H 1.00900 * 111.00335 * 303.94861 * 3 2 1 34 34 H 1.08995 * 109.47640 * 59.99901 * 4 3 2 35 35 H 1.09003 * 109.47342 * 299.99234 * 4 3 2 36 36 H 1.09002 * 109.88192 * 336.74876 * 7 5 4 37 37 H 1.09000 * 109.88128 * 215.73728 * 7 5 4 38 38 H 1.09001 * 109.46677 * 299.99714 * 11 9 8 39 39 H 1.09003 * 109.47400 * 59.99845 * 11 9 8 40 40 H 0.97000 * 119.99829 * 179.97438 * 16 15 13 41 41 H 1.08999 * 110.36956 * 142.96999 * 21 8 7 42 42 H 1.09001 * 110.36709 * 265.18192 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4881 1.4241 -0.0006 5 6 3.9594 2.8798 -0.0012 6 1 3.5472 3.4194 -0.8539 7 6 3.5796 3.5772 1.3220 8 7 4.7523 3.5115 2.2061 9 6 4.8296 4.0286 3.4483 10 8 3.8765 4.6086 3.9240 11 6 6.1004 3.8873 4.2458 12 16 5.8915 4.6799 5.8596 13 6 7.4788 4.3718 6.5596 14 1 8.2236 3.8331 5.9928 15 6 7.7720 4.8216 7.8396 16 7 6.8643 5.4787 8.5302 17 14 9.4551 4.4957 8.5814 18 1 10.2877 3.7439 7.6085 19 1 10.1130 5.7877 8.9025 20 1 9.3022 3.6960 9.8233 21 6 5.8297 2.7854 1.5093 22 6 5.5117 2.9544 0.0026 23 1 5.8559 3.9218 -0.3632 24 6 6.1184 1.8139 -0.8172 25 9 5.6153 0.5915 -0.3594 26 9 5.7846 1.9801 -2.1656 27 9 7.5103 1.8275 -0.6762 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6442 1.9012 -0.7814 34 1 3.8647 0.9203 -0.8907 35 1 3.8654 0.9201 0.8892 36 1 2.7375 3.0621 1.7842 37 1 3.3176 4.6178 1.1306 38 1 6.3254 2.8300 4.3863 39 1 6.9206 4.3653 3.7101 40 1 7.0691 5.7927 9.4249 41 1 6.7983 3.2265 1.7445 42 1 5.8168 1.7310 1.7855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507454623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:03 Heat of formation + Delta-G solvation = -177.764306 kcal Electronic energy + Delta-G solvation = -28207.903324 eV Core-core repulsion = 23706.462568 eV Total energy + Delta-G solvation = -4501.440756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.60360 -48.09406 -47.96739 -40.19361 -37.98336 -36.34501 -32.94789 -32.43594 -31.24580 -29.98416 -28.33272 -26.07777 -25.56164 -24.98894 -22.86330 -22.37289 -20.81375 -19.66919 -18.95743 -18.57273 -17.80993 -17.49615 -16.88359 -16.33449 -15.83466 -15.62186 -15.05251 -14.88594 -14.84023 -14.80722 -14.56778 -14.42917 -14.27744 -14.11704 -13.98159 -13.76139 -13.57363 -13.31969 -12.93424 -12.70655 -12.49080 -12.44913 -12.28450 -11.98363 -11.82365 -11.67192 -11.53165 -11.22807 -11.08476 -11.05698 -11.02583 -10.76314 -9.81953 -9.47964 -9.08177 -8.74236 -8.61544 -8.24703 -6.51618 -6.22614 -3.93400 2.25008 2.83641 2.99368 3.21280 3.21503 3.25286 3.30160 3.36013 3.54924 3.63013 3.80329 4.16047 4.20125 4.24283 4.42835 4.63605 4.74004 4.82978 4.85743 4.95407 5.02889 5.12671 5.17596 5.22391 5.30207 5.34476 5.47020 5.51980 5.57993 5.68836 5.76144 5.84832 5.88580 5.93774 6.09674 6.29035 6.61381 7.01734 7.53369 7.59401 8.34632 8.48778 9.22890 10.84854 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.002862 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.931969 B = 9782.508616 C =11028.264067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 N -0.689 5.689 4 C 0.049 3.951 5 C -0.089 4.089 6 H 0.102 0.898 7 C 0.120 3.880 8 N -0.624 5.624 9 C 0.551 3.449 10 O -0.508 6.508 11 C -0.149 4.149 12 S -0.059 6.059 13 C -0.535 4.535 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.111 3.889 22 C -0.152 4.152 23 H 0.134 0.866 24 C 0.465 3.535 25 F -0.175 7.175 26 F -0.181 7.181 27 F -0.178 7.178 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.339 0.661 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.094 0.906 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 -10.139 -24.169 26.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.073 4.073 3 N -0.320 5.320 4 C -0.079 4.079 5 C -0.109 4.109 6 H 0.120 0.880 7 C -0.002 4.002 8 N -0.362 5.362 9 C 0.340 3.660 10 O -0.381 6.381 11 C -0.300 4.300 12 S 0.168 5.832 13 C -0.683 4.683 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.013 4.013 22 C -0.172 4.172 23 H 0.152 0.848 24 C 0.410 3.590 25 F -0.157 7.157 26 F -0.162 7.162 27 F -0.160 7.160 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.157 0.843 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.212 -9.110 -22.511 25.333 hybrid contribution 2.603 -1.354 -1.251 3.190 sum -4.608 -10.464 -23.762 26.370 Atomic orbital electron populations 1.21770 0.94786 1.01774 1.02530 1.21886 0.95764 0.89032 1.00608 1.60410 1.07560 1.14057 1.50014 1.22655 0.88290 0.94648 1.02342 1.22355 0.90964 0.97753 0.99802 0.87966 1.21881 0.89715 1.00739 0.87877 1.48419 1.14265 1.58043 1.15458 1.20016 0.89777 0.77245 0.78994 1.90729 1.38665 1.40588 1.68081 1.23542 0.96966 1.05730 1.03747 1.85424 1.20742 1.72076 1.05006 1.22894 0.99312 1.42621 1.03450 0.90854 1.24997 0.98110 0.94540 0.95952 1.70028 1.33573 1.35167 1.11468 0.86111 0.82233 0.78165 0.78958 1.19601 1.20563 1.20564 1.22162 0.93090 0.98663 0.87373 1.23809 0.98273 0.98073 0.97073 0.84763 1.20227 0.76469 0.83609 0.78699 1.93169 1.86348 1.47590 1.88557 1.93194 1.92216 1.95492 1.35309 1.93226 1.30527 1.96657 1.95553 0.92195 0.91556 0.92902 0.95417 0.90860 0.84297 0.93407 0.89603 0.89075 0.91135 0.89199 0.89210 0.92217 0.88753 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.17 37.16 0.38 -0.62 16 2 C 0.06 0.42 6.40 -3.83 -0.02 0.40 16 3 N -0.69 -5.46 5.96 -113.79 -0.68 -6.14 16 4 C 0.05 0.40 3.40 -3.82 -0.01 0.39 16 5 C -0.09 -0.69 3.00 -88.65 -0.27 -0.95 16 6 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 7 C 0.12 1.36 6.37 -3.07 -0.02 1.34 16 8 N -0.62 -8.51 3.33 -170.52 -0.57 -9.08 16 9 C 0.55 10.37 7.87 -10.99 -0.09 10.28 16 10 O -0.51 -11.60 16.19 5.56 0.09 -11.51 16 11 C -0.15 -3.00 5.16 36.00 0.19 -2.82 16 12 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 13 C -0.53 -15.12 9.50 30.94 0.29 -14.82 16 14 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 15 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 17 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.11 1.13 5.65 -2.53 -0.01 1.11 16 22 C -0.15 -1.16 2.99 -88.33 -0.26 -1.43 16 23 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 24 C 0.46 3.76 2.41 37.16 0.09 3.85 16 25 F -0.18 -1.52 12.29 2.25 0.03 -1.49 16 26 F -0.18 -1.49 17.02 2.25 0.04 -1.45 16 27 F -0.18 -1.64 17.13 2.25 0.04 -1.60 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.34 2.20 8.73 -39.29 -0.34 1.86 16 34 H 0.05 0.37 5.79 -51.93 -0.30 0.07 16 35 H 0.09 0.83 6.96 -51.93 -0.36 0.47 16 36 H 0.09 1.17 7.44 -51.93 -0.39 0.79 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.09 1.65 7.85 -51.91 -0.41 1.24 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 0.92 7.48 -51.93 -0.39 0.53 16 42 H 0.08 0.78 7.16 -51.93 -0.37 0.41 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -33.63 365.79 -7.78 -41.41 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.91 Total: -1.54 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 0.16 Total: -1.29 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -0.51 Total: -40.53 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.10 Total: -4.54 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.63 -7.78 -41.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507454623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.350 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds