Wall clock time and date at job start Tue Mar 31 2020 23:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46894 * 109.47002 * 2 1 4 4 C 1.46899 * 110.99819 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46919 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.78210 * 303.21074 * 5 4 3 7 7 C 1.54325 * 110.72125 * 66.45497 * 5 4 3 8 8 N 1.47018 * 107.40412 * 96.24436 * 7 5 4 9 9 C 1.34775 * 125.64993 * 178.90064 * 8 7 5 10 10 O 1.21282 * 119.99810 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00280 * 180.02562 * 9 8 7 12 12 S 1.81005 * 109.47365 * 179.97438 * 11 9 8 13 13 C 1.76201 * 99.99828 * 179.97438 * 12 11 9 14 14 H 1.07990 * 120.00367 * 0.02562 * 13 12 11 15 15 C 1.38806 * 119.99588 * 180.02562 * 13 12 11 16 16 N 1.31632 * 120.00014 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99737 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47380 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46832 * 119.99980 * 17 15 13 20 20 H 1.48499 * 109.47310 * 239.99480 * 17 15 13 21 21 C 1.47426 * 108.70517 * 358.86539 * 8 7 5 22 22 C 1.54914 * 104.82992 * 24.12623 * 21 8 7 23 23 H 1.09004 * 111.00278 * 81.10732 * 22 21 8 24 24 C 1.53000 * 111.00205 * 204.91932 * 22 21 8 25 25 F 1.39896 * 109.47647 * 58.54632 * 24 22 21 26 26 F 1.39899 * 109.46883 * 178.55083 * 24 22 21 27 27 F 1.39903 * 109.46974 * 298.54713 * 24 22 21 28 28 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47060 * 300.00294 * 1 2 3 30 30 H 1.09002 * 109.46960 * 60.00441 * 1 2 3 31 31 H 1.08994 * 109.47060 * 239.99706 * 2 1 3 32 32 H 1.08995 * 109.46910 * 119.99936 * 2 1 3 33 33 H 1.00900 * 111.00335 * 303.94861 * 3 2 1 34 34 H 1.08995 * 109.47640 * 59.99901 * 4 3 2 35 35 H 1.09003 * 109.47342 * 299.99234 * 4 3 2 36 36 H 1.09002 * 109.88192 * 336.74876 * 7 5 4 37 37 H 1.09000 * 109.88128 * 215.73728 * 7 5 4 38 38 H 1.09001 * 109.46677 * 299.99714 * 11 9 8 39 39 H 1.09003 * 109.47400 * 59.99845 * 11 9 8 40 40 H 0.97000 * 119.99829 * 179.97438 * 16 15 13 41 41 H 1.08999 * 110.36956 * 142.96999 * 21 8 7 42 42 H 1.09001 * 110.36709 * 265.18192 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4881 1.4241 -0.0006 5 6 3.9594 2.8798 -0.0012 6 1 3.5472 3.4194 -0.8539 7 6 3.5796 3.5772 1.3220 8 7 4.7523 3.5115 2.2061 9 6 4.8296 4.0286 3.4483 10 8 3.8765 4.6086 3.9240 11 6 6.1004 3.8873 4.2458 12 16 5.8915 4.6799 5.8596 13 6 7.4788 4.3718 6.5596 14 1 8.2236 3.8331 5.9928 15 6 7.7720 4.8216 7.8396 16 7 6.8643 5.4787 8.5302 17 14 9.4551 4.4957 8.5814 18 1 10.2877 3.7439 7.6085 19 1 10.1130 5.7877 8.9025 20 1 9.3022 3.6960 9.8233 21 6 5.8297 2.7854 1.5093 22 6 5.5117 2.9544 0.0026 23 1 5.8559 3.9218 -0.3632 24 6 6.1184 1.8139 -0.8172 25 9 5.6153 0.5915 -0.3594 26 9 5.7846 1.9801 -2.1656 27 9 7.5103 1.8275 -0.6762 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6442 1.9012 -0.7814 34 1 3.8647 0.9203 -0.8907 35 1 3.8654 0.9201 0.8892 36 1 2.7375 3.0621 1.7842 37 1 3.3176 4.6178 1.1306 38 1 6.3254 2.8300 4.3863 39 1 6.9206 4.3653 3.7101 40 1 7.0691 5.7927 9.4249 41 1 6.7983 3.2265 1.7445 42 1 5.8168 1.7310 1.7855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507454623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:02 Heat of formation + Delta-G solvation = -200.617106 kcal Electronic energy + Delta-G solvation = -28208.894296 eV Core-core repulsion = 23706.462568 eV Total energy + Delta-G solvation = -4502.431728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.26159 -48.75951 -48.62226 -41.29113 -39.17389 -37.10681 -34.58452 -33.97540 -31.96240 -31.23549 -29.34814 -27.67934 -26.88020 -25.90472 -23.65016 -22.99940 -21.55826 -20.90611 -19.74273 -19.58716 -19.21224 -18.48766 -17.98667 -17.09178 -16.97459 -16.87218 -16.45431 -16.39425 -15.91676 -15.53611 -15.51365 -15.25652 -15.05903 -14.92769 -14.78420 -14.68647 -14.59947 -14.39594 -14.34400 -13.78534 -13.52290 -13.45915 -13.16803 -13.09393 -12.96800 -12.90942 -12.61996 -12.57073 -12.33721 -12.17633 -11.88356 -11.75585 -11.70391 -11.15624 -11.02582 -10.27842 -9.80181 -9.34148 -8.67535 -8.34608 -6.12897 1.21296 1.41868 1.42449 1.50643 1.55503 1.64457 2.06156 2.26983 2.53857 2.66560 2.91635 2.99790 3.17291 3.24070 3.46498 3.55338 3.74876 3.84962 3.92678 4.03297 4.22935 4.23564 4.29227 4.38371 4.40120 4.50645 4.60178 4.64473 4.65795 4.68725 4.91018 4.98324 5.01862 5.13252 5.24333 5.34105 5.42600 6.00201 6.20242 6.25912 6.49695 7.06167 7.07016 8.74874 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.002862 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.931969 B = 9782.508616 C =11028.264067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 N -0.699 5.699 4 C 0.054 3.946 5 C -0.075 4.075 6 H 0.132 0.868 7 C 0.119 3.881 8 N -0.612 5.612 9 C 0.551 3.449 10 O -0.559 6.559 11 C -0.124 4.124 12 S -0.149 6.149 13 C -0.544 4.544 14 H 0.083 0.917 15 C 0.013 3.987 16 N -0.911 5.911 17 Si 0.999 3.001 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.275 1.275 21 C 0.100 3.900 22 C -0.139 4.139 23 H 0.157 0.843 24 C 0.470 3.530 25 F -0.179 7.179 26 F -0.178 7.178 27 F -0.183 7.183 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.350 0.650 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.271 0.729 41 H 0.104 0.896 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 -11.133 -26.549 29.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 N -0.332 5.332 4 C -0.075 4.075 5 C -0.095 4.095 6 H 0.150 0.850 7 C -0.003 4.003 8 N -0.347 5.347 9 C 0.339 3.661 10 O -0.437 6.437 11 C -0.275 4.275 12 S 0.078 5.922 13 C -0.692 4.692 14 H 0.101 0.899 15 C -0.192 4.192 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.200 1.200 21 C -0.023 4.023 22 C -0.160 4.160 23 H 0.175 0.825 24 C 0.416 3.584 25 F -0.161 7.161 26 F -0.159 7.159 27 F -0.165 7.165 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.168 0.832 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.685 -10.137 -24.960 27.533 hybrid contribution 2.064 -1.118 -0.647 2.435 sum -3.621 -11.255 -25.607 28.204 Atomic orbital electron populations 1.21735 0.94180 1.02277 1.02264 1.21874 0.96254 0.88835 1.00314 1.60384 1.07557 1.14494 1.50797 1.22574 0.88452 0.94654 1.01845 1.22329 0.91125 0.97466 0.98535 0.84994 1.22010 0.88362 1.01108 0.88858 1.48253 1.16166 1.56274 1.14053 1.19716 0.88597 0.77426 0.80376 1.90708 1.39951 1.43326 1.69723 1.23349 0.98607 1.05768 0.99743 1.85606 1.22028 1.73939 1.10622 1.23215 0.99293 1.42658 1.04002 0.89869 1.26129 1.02631 0.93997 0.96402 1.70190 1.36139 1.36443 1.11987 0.84901 0.76616 0.78295 0.78109 1.17977 1.19907 1.20018 1.22438 0.92314 0.98635 0.88882 1.23765 0.97980 0.99110 0.95120 0.82510 1.20155 0.76151 0.83373 0.78760 1.93173 1.86348 1.47929 1.88610 1.93205 1.92158 1.95456 1.35084 1.93222 1.31009 1.96661 1.95590 0.91364 0.92996 0.91915 0.94571 0.92235 0.83151 0.92548 0.91404 0.90819 0.91062 0.87620 0.87076 0.91987 0.87767 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.17 71.98 0.73 -1.06 16 2 C 0.06 0.78 6.40 86.31 0.55 1.33 16 3 N -0.70 -10.05 5.96 -513.91 -3.06 -13.11 16 4 C 0.05 0.76 3.40 86.30 0.29 1.05 16 5 C -0.08 -0.96 3.00 -9.52 -0.03 -0.99 16 6 H 0.13 1.01 8.14 -2.39 -0.02 1.00 16 7 C 0.12 2.52 6.37 86.73 0.55 3.07 16 8 N -0.61 -16.01 3.33 -811.79 -2.70 -18.71 16 9 C 0.55 20.77 7.87 87.66 0.69 21.46 16 10 O -0.56 -26.44 16.19 -3.04 -0.05 -26.49 16 11 C -0.12 -4.93 5.16 71.24 0.37 -4.56 16 12 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 13 C -0.54 -30.93 9.50 67.96 0.65 -30.28 16 14 H 0.08 4.39 7.80 -2.92 -0.02 4.37 16 15 C 0.01 0.75 5.49 84.86 0.47 1.21 16 16 N -0.91 -55.92 13.22 21.65 0.29 -55.64 16 17 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 C 0.10 1.80 5.65 86.86 0.49 2.29 16 22 C -0.14 -1.69 2.99 -9.31 -0.03 -1.72 16 23 H 0.16 1.31 8.14 -2.39 -0.02 1.29 16 24 C 0.47 6.19 2.41 71.98 0.17 6.37 16 25 F -0.18 -2.68 12.29 44.97 0.55 -2.12 16 26 F -0.18 -2.32 17.02 44.97 0.77 -1.56 16 27 F -0.18 -2.86 17.13 44.97 0.77 -2.08 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.35 3.76 8.73 -89.69 -0.78 2.98 16 34 H 0.06 0.73 5.79 -2.39 -0.01 0.72 16 35 H 0.07 1.22 6.96 -2.39 -0.02 1.21 16 36 H 0.07 1.88 7.44 -2.39 -0.02 1.86 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 39 H 0.11 3.93 7.85 -2.39 -0.02 3.91 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.10 1.72 7.48 -2.39 -0.02 1.70 16 42 H 0.09 1.50 7.16 -2.39 -0.02 1.48 16 Total: -1.00 -75.60 365.79 2.60 -72.99 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.27 Total: 12.49 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 4.91 Total: -1.83 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -5.47 Total: -87.45 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 9 Polarization: -7.86 SS G_CDS: 2.09 Total: -5.77 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -75.60 2.60 -72.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507454623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.624 kcal (2) G-P(sol) polarization free energy of solvation -75.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds