Wall clock time and date at job start Tue Mar 31 2020 23:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.46998 * 2 1 4 4 C 1.46897 * 110.99969 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47188 * 180.02562 * 4 3 2 6 6 H 1.09003 * 110.29511 * 52.86861 * 5 4 3 7 7 C 1.54004 * 110.41449 * 290.67029 * 5 4 3 8 8 N 1.47480 * 107.08731 * 239.75954 * 7 5 4 9 9 C 1.34778 * 127.03457 * 205.49088 * 8 7 5 10 10 O 1.21285 * 119.99678 * 0.02562 * 9 8 7 11 11 C 1.50702 * 120.00213 * 179.97438 * 9 8 7 12 12 S 1.80998 * 109.46956 * 180.02562 * 11 9 8 13 13 C 1.76204 * 99.99542 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00415 * 359.97438 * 13 12 11 15 15 C 1.38804 * 119.99803 * 180.02562 * 13 12 11 16 16 N 1.31627 * 120.00093 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99924 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46960 * 90.00086 * 17 15 13 19 19 H 1.48506 * 109.46894 * 210.00057 * 17 15 13 20 20 H 1.48494 * 109.47272 * 329.99978 * 17 15 13 21 21 C 1.48114 * 105.93245 * 25.44302 * 8 7 5 22 22 C 1.54621 * 110.32862 * 175.00020 * 5 4 3 23 23 H 1.09003 * 110.74080 * 215.66011 * 22 5 4 24 24 C 1.52997 * 110.74001 * 338.80799 * 22 5 4 25 25 F 1.39905 * 109.47157 * 59.99728 * 24 22 5 26 26 F 1.39900 * 109.47010 * 300.00119 * 24 22 5 27 27 F 1.39897 * 109.47422 * 179.97438 * 24 22 5 28 28 H 1.09003 * 109.47552 * 60.00063 * 1 2 3 29 29 H 1.08999 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47327 * 299.99518 * 1 2 3 31 31 H 1.09004 * 109.47050 * 240.00282 * 2 1 3 32 32 H 1.08994 * 109.47136 * 120.00317 * 2 1 3 33 33 H 1.00897 * 111.00266 * 303.95778 * 3 2 1 34 34 H 1.08997 * 109.47416 * 60.00485 * 4 3 2 35 35 H 1.08995 * 109.47363 * 300.00384 * 4 3 2 36 36 H 1.08998 * 109.91178 * 359.12447 * 7 5 4 37 37 H 1.09002 * 109.91087 * 120.20378 * 7 5 4 38 38 H 1.09000 * 109.47196 * 300.00334 * 11 9 8 39 39 H 1.08999 * 109.46543 * 60.00647 * 11 9 8 40 40 H 0.97003 * 120.00084 * 180.02562 * 16 15 13 41 41 H 1.09001 * 110.66239 * 202.26101 * 21 8 7 42 42 H 1.08998 * 110.65789 * 79.15568 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4880 1.4242 0.0006 5 6 3.9594 2.8798 0.0012 6 1 3.4884 3.4293 0.8163 7 6 3.6407 3.5482 -1.3491 8 7 4.9233 3.9914 -1.9266 9 6 5.1141 4.9952 -2.8055 10 8 4.1678 5.6420 -3.2020 11 6 6.5033 5.3147 -3.2945 12 16 6.4302 6.7019 -4.4549 13 6 8.1391 6.8559 -4.8556 14 1 8.8612 6.1900 -4.4067 15 6 8.5575 7.8339 -5.7473 16 7 9.8341 7.9493 -6.0463 17 14 7.3086 8.9862 -6.5232 18 1 7.1454 10.1883 -5.6667 19 1 7.7839 9.3978 -7.8686 20 1 6.0040 8.2887 -6.6511 21 6 5.9590 3.1084 -1.3423 22 6 5.4989 2.9458 0.1283 23 1 5.8003 3.8053 0.7271 24 6 6.0492 1.6503 0.7280 25 9 5.7099 0.5731 -0.0977 26 9 5.4991 1.4545 1.9994 27 9 7.4416 1.7383 0.8304 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6441 1.9013 -0.7813 34 1 3.8654 0.9202 -0.8891 35 1 3.8646 0.9204 0.8907 36 1 3.1621 2.8301 -2.0150 37 1 2.9845 4.4046 -1.1937 38 1 7.1340 5.5832 -2.4471 39 1 6.9213 4.4422 -3.7966 40 1 10.1266 8.6329 -6.6692 41 1 6.9394 3.5826 -1.3885 42 1 5.9730 2.1439 -1.8498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507454624.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:06 Heat of formation + Delta-G solvation = -178.563110 kcal Electronic energy + Delta-G solvation = -28183.345208 eV Core-core repulsion = 23681.869814 eV Total energy + Delta-G solvation = -4501.475395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.62104 -48.03834 -47.97937 -40.31089 -38.17095 -36.44123 -33.10552 -32.47835 -31.33693 -30.12592 -28.44383 -26.07285 -25.69433 -25.18112 -23.10958 -22.41105 -20.71548 -19.83678 -18.95562 -18.60136 -17.81637 -17.61136 -17.11732 -16.42385 -15.74618 -15.58436 -15.33217 -15.06584 -14.95137 -14.77629 -14.65332 -14.40052 -14.38908 -14.11228 -13.99823 -13.83377 -13.72330 -13.44826 -13.14007 -12.84929 -12.66793 -12.45265 -12.29569 -12.11548 -12.04211 -11.69548 -11.50948 -11.34533 -11.28089 -11.13575 -11.04191 -10.66565 -9.90869 -9.69259 -9.04752 -8.91274 -8.84109 -8.56390 -6.98078 -6.32712 -4.05521 2.21715 2.57163 2.76101 3.04543 3.26639 3.30022 3.35658 3.47039 3.52714 3.59873 3.74710 4.08969 4.21126 4.29183 4.41127 4.55321 4.63283 4.70178 4.74238 4.83800 4.90906 5.05330 5.06266 5.11418 5.13886 5.23496 5.28456 5.35616 5.45329 5.52582 5.61302 5.64731 5.70242 5.80904 5.90575 6.01439 6.54522 6.93652 7.35221 7.90136 8.25095 8.37677 9.13129 10.76395 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.002774 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.176897 B =10091.201835 C =11422.582039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.690 5.690 4 C 0.044 3.956 5 C -0.092 4.092 6 H 0.110 0.890 7 C 0.114 3.886 8 N -0.624 5.624 9 C 0.554 3.446 10 O -0.509 6.509 11 C -0.121 4.121 12 S -0.140 6.140 13 C -0.522 4.522 14 H 0.089 0.911 15 C 0.096 3.904 16 N -0.879 5.879 17 Si 0.856 3.144 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.108 3.892 22 C -0.150 4.150 23 H 0.134 0.866 24 C 0.464 3.536 25 F -0.178 7.178 26 F -0.177 7.177 27 F -0.178 7.178 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.342 0.658 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.102 0.898 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.749 -17.510 16.124 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 N -0.322 5.322 4 C -0.085 4.085 5 C -0.112 4.112 6 H 0.128 0.872 7 C -0.009 4.009 8 N -0.362 5.362 9 C 0.342 3.658 10 O -0.383 6.383 11 C -0.271 4.271 12 S 0.087 5.913 13 C -0.670 4.670 14 H 0.107 0.893 15 C -0.113 4.113 16 N -0.515 5.515 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.017 4.017 22 C -0.172 4.172 23 H 0.152 0.848 24 C 0.409 3.591 25 F -0.159 7.159 26 F -0.158 7.158 27 F -0.159 7.159 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.160 0.840 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.120 0.880 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.046 -16.321 16.018 26.837 hybrid contribution 1.257 -0.724 -0.668 1.597 sum -12.789 -17.045 15.349 26.262 Atomic orbital electron populations 1.21771 0.94753 1.01811 1.02557 1.21907 0.95810 0.89123 1.00659 1.60493 1.07349 1.14029 1.50292 1.22716 0.88737 0.94713 1.02340 1.22176 0.91697 0.97720 0.99579 0.87175 1.22015 0.87237 0.99584 0.92065 1.48685 1.07988 1.33747 1.45747 1.20025 0.91312 0.77480 0.76939 1.90730 1.43377 1.48595 1.55576 1.23284 0.95285 1.04682 1.03850 1.84816 1.13743 1.39126 1.53664 1.22289 0.89944 1.22555 1.32167 0.89316 1.24712 0.95231 0.96355 0.94978 1.69934 1.14120 1.33677 1.33792 0.86742 0.83298 0.82323 0.79525 1.19168 1.19890 1.15929 1.22476 0.93808 0.96371 0.89000 1.23705 0.98262 0.95205 0.99978 0.84836 1.20228 0.75942 0.86504 0.76406 1.93177 1.91677 1.59053 1.72043 1.93178 1.85149 1.95842 1.41649 1.93227 1.30255 1.96395 1.96023 0.92712 0.92142 0.91727 0.95186 0.90973 0.83976 0.93214 0.89731 0.91517 0.89406 0.88363 0.88342 0.91882 0.88003 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.17 37.16 0.38 -0.51 16 2 C 0.05 0.37 6.40 -3.83 -0.02 0.34 16 3 N -0.69 -5.14 6.50 -113.79 -0.74 -5.88 16 4 C 0.04 0.33 3.36 -3.83 -0.01 0.32 16 5 C -0.09 -0.70 3.02 -89.25 -0.27 -0.97 16 6 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 7 C 0.11 1.13 6.13 -2.98 -0.02 1.11 16 8 N -0.62 -7.73 3.29 -169.77 -0.56 -8.29 16 9 C 0.55 9.53 7.91 -10.98 -0.09 9.44 16 10 O -0.51 -10.66 16.20 5.55 0.09 -10.57 16 11 C -0.12 -2.25 5.09 36.01 0.18 -2.07 16 12 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16 13 C -0.52 -14.75 10.04 30.94 0.31 -14.44 16 14 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 15 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 16 N -0.88 -26.19 13.97 55.49 0.78 -25.42 16 17 Si 0.86 21.47 27.74 -169.99 -4.71 16.76 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 21 C 0.11 1.00 6.27 -2.13 -0.01 0.98 16 22 C -0.15 -1.15 3.06 -88.75 -0.27 -1.42 16 23 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 24 C 0.46 3.75 2.40 37.16 0.09 3.84 16 25 F -0.18 -1.49 12.78 2.25 0.03 -1.47 16 26 F -0.18 -1.51 15.46 2.25 0.03 -1.47 16 27 F -0.18 -1.63 17.22 2.25 0.04 -1.59 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.34 2.41 7.67 -39.29 -0.30 2.11 16 34 H 0.05 0.40 6.84 -51.93 -0.36 0.04 16 35 H 0.08 0.68 5.16 -51.93 -0.27 0.41 16 36 H 0.07 0.63 7.11 -51.93 -0.37 0.26 16 37 H 0.09 0.95 8.06 -51.93 -0.42 0.53 16 38 H 0.10 1.69 7.91 -51.92 -0.41 1.28 16 39 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.10 0.92 7.23 -51.93 -0.38 0.54 16 42 H 0.09 0.74 7.31 -51.93 -0.38 0.36 16 LS Contribution 360.77 15.07 5.44 5.44 Total: -1.00 -32.66 360.77 -7.27 -39.93 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.84 Total: -1.29 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 0.17 Total: -0.70 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: -0.52 Total: -39.58 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.10 Total: -4.53 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.76 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.66 -7.27 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507454624.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.635 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds