Wall clock time and date at job start Tue Mar 31 2020 23:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47517 * 2 1 4 4 C 1.50703 * 109.47244 * 239.99929 * 2 1 3 5 5 O 1.21267 * 120.00250 * 317.51030 * 4 2 1 6 6 N 1.34782 * 119.99960 * 137.50602 * 4 2 1 7 7 C 1.37209 * 119.99935 * 185.77459 * 6 4 2 8 8 H 1.07996 * 119.99805 * 245.51529 * 7 6 4 9 9 C 1.38892 * 119.99927 * 65.51615 * 7 6 4 10 10 N 1.31416 * 119.99933 * 50.44506 * 9 7 6 11 11 Si 1.86799 * 120.00118 * 230.44374 * 9 7 6 12 12 H 1.48503 * 109.47066 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47051 * 119.99888 * 11 9 7 14 14 H 1.48503 * 109.47237 * 240.00073 * 11 9 7 15 15 C 1.39427 * 119.99940 * 5.77580 * 6 4 2 16 16 C 1.39070 * 119.69576 * 289.13821 * 15 6 4 17 17 C 1.38386 * 119.09448 * 179.77135 * 16 15 6 18 18 C 1.38826 * 118.49290 * 0.49309 * 17 16 15 19 19 C 1.38149 * 119.30950 * 359.74655 * 18 17 16 20 20 N 1.31873 * 120.85716 * 0.02562 * 19 18 17 21 21 C 1.50701 * 109.46885 * 120.00535 * 2 1 3 22 22 C 1.38249 * 119.93425 * 60.07019 * 21 2 1 23 23 C 1.38232 * 120.14765 * 180.02562 * 22 21 2 24 24 C 1.38551 * 120.02773 * 359.95219 * 23 22 21 25 25 C 1.39262 * 119.82574 * 359.97438 * 24 23 22 26 26 C 1.38241 * 119.92554 * 239.99807 * 21 2 1 27 27 O 1.36505 * 108.63618 * 180.02562 * 25 24 23 28 28 C 1.43983 * 105.48721 * 342.71634 * 27 25 24 29 29 O 1.36506 * 131.53062 * 180.02562 * 24 23 22 30 30 H 1.08997 * 109.47103 * 305.91352 * 1 2 3 31 31 H 1.09003 * 109.46869 * 65.91122 * 1 2 3 32 32 H 1.09000 * 109.46872 * 185.90883 * 1 2 3 33 33 H 0.96999 * 119.99706 * 184.97033 * 10 9 7 34 34 H 1.07997 * 120.45014 * 0.02562 * 16 15 6 35 35 H 1.07998 * 120.75091 * 180.25809 * 17 16 15 36 36 H 1.08002 * 120.34546 * 179.72436 * 18 17 16 37 37 H 1.08008 * 119.56776 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.92683 * 359.96707 * 22 21 2 39 39 H 1.07993 * 119.98861 * 180.22642 * 23 22 21 40 40 H 1.08002 * 119.98542 * 0.02562 * 26 21 2 41 41 H 1.08995 * 110.57806 * 268.55955 * 28 27 25 42 42 H 1.09000 * 110.57531 * 145.68246 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 1.5044 -1.7397 -1.5945 6 7 3.0685 -0.2018 -1.9265 7 6 3.4501 -0.7812 -3.1103 8 1 4.4164 -1.2564 -3.1920 9 6 2.5936 -0.7563 -4.2034 10 7 2.0500 0.3771 -4.5866 11 14 2.2144 -2.3340 -5.1289 12 1 2.9463 -3.4638 -4.5019 13 1 0.7545 -2.6003 -5.0759 14 1 2.6406 -2.1922 -6.5444 15 6 3.7525 0.9130 -1.4435 16 6 3.1347 2.1589 -1.4556 17 6 3.8233 3.2562 -0.9688 18 6 5.1148 3.0706 -0.4946 19 6 5.6683 1.8050 -0.5174 20 7 4.9863 0.7768 -0.9831 21 6 2.0323 -0.7105 1.2304 22 6 1.6986 -2.0346 1.4470 23 6 2.1565 -2.6904 2.5744 24 6 2.9525 -2.0217 3.4902 25 6 3.2899 -0.6884 3.2713 26 6 2.8270 -0.0373 2.1395 27 8 4.0730 -0.2613 4.3046 28 6 3.8745 -1.2209 5.3596 29 8 3.5245 -2.4301 4.6605 30 1 -0.3633 0.6028 0.8323 31 1 -0.3633 0.4195 -0.9382 32 1 -0.3633 -1.0222 0.1058 33 1 1.3968 0.3837 -5.3036 34 1 2.1298 2.2679 -1.8357 35 1 3.3677 4.2353 -0.9616 36 1 5.6811 3.9069 -0.1121 37 1 6.6729 1.6559 -0.1499 38 1 1.0781 -2.5574 0.7342 39 1 1.8973 -3.7258 2.7391 40 1 3.0867 0.9968 1.9674 41 1 3.0612 -0.9077 6.0143 42 1 4.7936 -1.3601 5.9287 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527053132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:28 Heat of formation + Delta-G solvation = -27.867343 kcal Electronic energy + Delta-G solvation = -30079.701650 eV Core-core repulsion = 25991.173703 eV Total energy + Delta-G solvation = -4088.527947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.17678 -41.68490 -40.20442 -38.88309 -37.30463 -36.41656 -34.77385 -34.02910 -33.17643 -31.62102 -30.79369 -29.98218 -27.49817 -26.70818 -25.40394 -24.31193 -24.15629 -23.96724 -23.00464 -21.00255 -19.49433 -19.00665 -18.86319 -18.44241 -17.65788 -17.36559 -17.30804 -16.89511 -16.79366 -16.17541 -15.91574 -15.59400 -15.49209 -15.19663 -14.91164 -14.65994 -14.53061 -14.37135 -14.03057 -13.98738 -13.92206 -13.78069 -13.66369 -13.35944 -13.04195 -12.85508 -12.69904 -12.61141 -12.45096 -12.21941 -11.93351 -11.74244 -10.81211 -10.68308 -10.60322 -10.37387 -9.93135 -9.71126 -9.35375 -9.04980 -8.54642 -6.25514 0.01458 0.15410 0.30559 0.53527 1.25472 1.38704 1.53039 1.71956 1.93897 2.18442 2.47776 2.49460 2.65153 2.88276 3.01812 3.41268 3.63355 3.67014 3.81462 3.92970 4.01369 4.07446 4.12672 4.16146 4.25477 4.30746 4.32807 4.38335 4.43219 4.51085 4.69753 4.82133 4.87494 4.94919 4.97717 4.98920 5.12695 5.24833 5.30904 5.35495 5.36407 5.39443 5.48606 5.85512 6.07807 6.24109 6.83528 6.86854 7.13794 7.52632 7.99423 8.35327 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011567 B = 0.004731 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.136420 B = 5917.046968 C = 7267.668235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 H 0.100 0.900 4 C 0.501 3.499 5 O -0.577 6.577 6 N -0.414 5.414 7 C -0.403 4.403 8 H 0.049 0.951 9 C 0.083 3.917 10 N -0.818 5.818 11 Si 0.929 3.071 12 H -0.277 1.277 13 H -0.276 1.276 14 H -0.270 1.270 15 C 0.340 3.660 16 C -0.183 4.183 17 C -0.062 4.062 18 C -0.178 4.178 19 C 0.096 3.904 20 N -0.533 5.533 21 C -0.063 4.063 22 C -0.099 4.099 23 C -0.098 4.098 24 C 0.020 3.980 25 C 0.025 3.975 26 C -0.092 4.092 27 O -0.321 6.321 28 C 0.204 3.796 29 O -0.321 6.321 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.276 0.724 34 H 0.122 0.878 35 H 0.171 0.829 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.136 0.864 41 H 0.109 0.891 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.138 6.765 17.801 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.088 4.088 3 H 0.118 0.882 4 C 0.291 3.709 5 O -0.457 6.457 6 N -0.134 5.134 7 C -0.526 4.526 8 H 0.067 0.933 9 C -0.132 4.132 10 N -0.448 5.448 11 Si 0.753 3.247 12 H -0.202 1.202 13 H -0.202 1.202 14 H -0.196 1.196 15 C 0.116 3.884 16 C -0.206 4.206 17 C -0.088 4.088 18 C -0.198 4.198 19 C -0.062 4.062 20 N -0.245 5.245 21 C -0.064 4.064 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.024 4.024 25 C -0.019 4.019 26 C -0.110 4.110 27 O -0.237 6.237 28 C 0.093 3.907 29 O -0.238 6.238 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.140 0.860 35 H 0.188 0.812 36 H 0.193 0.807 37 H 0.192 0.808 38 H 0.155 0.845 39 H 0.173 0.827 40 H 0.154 0.846 41 H 0.126 0.874 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.375 5.511 17.537 18.387 hybrid contribution -0.354 -0.131 -0.931 1.005 sum 0.022 5.380 16.606 17.456 Atomic orbital electron populations 1.21653 0.90300 1.03405 1.02722 1.20333 0.99185 0.99708 0.89536 0.88221 1.21022 0.81221 0.84687 0.83995 1.90447 1.58991 1.25475 1.70819 1.40859 1.28573 1.25138 1.18788 1.18353 1.05875 1.39801 0.88612 0.93291 1.25775 0.95051 0.97303 0.95065 1.70469 1.23384 1.26393 1.24522 0.86007 0.78488 0.82873 0.77364 1.20226 1.20191 1.19587 1.19222 0.89283 0.88612 0.91273 1.22173 1.02521 0.92844 1.03023 1.21875 0.94342 0.98860 0.93682 1.22437 0.96240 0.98983 1.02112 1.23109 0.99886 0.88423 0.94774 1.67294 1.08668 1.37054 1.11526 1.19173 0.98345 0.94562 0.94342 1.20998 1.00385 0.93984 0.96397 1.20217 0.97185 1.01565 0.92714 1.19892 0.99145 0.92641 0.90730 1.19672 0.96120 0.92885 0.93248 1.19857 0.98426 1.00661 0.92080 1.87319 1.62233 1.50303 1.23875 1.26182 1.04910 0.71809 0.87774 1.87318 1.75145 1.32068 1.29243 0.88775 0.92986 0.91789 0.91334 0.86032 0.81184 0.80665 0.80836 0.84454 0.82668 0.84598 0.87355 0.81994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.76 71.98 0.63 -3.32 16 2 C -0.07 -2.49 2.43 -12.28 -0.03 -2.52 16 3 H 0.10 3.56 4.86 -2.39 -0.01 3.54 16 4 C 0.50 24.93 6.06 87.66 0.53 25.46 16 5 O -0.58 -31.93 15.27 -2.99 -0.05 -31.97 16 6 N -0.41 -21.98 2.65 -464.37 -1.23 -23.21 16 7 C -0.40 -23.98 8.40 84.01 0.71 -23.28 16 8 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 9 C 0.08 4.70 4.80 84.91 0.41 5.11 16 10 N -0.82 -45.62 13.94 21.65 0.30 -45.32 16 11 Si 0.93 46.35 29.69 68.60 2.04 48.39 16 12 H -0.28 -14.42 7.11 99.48 0.71 -13.71 16 13 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 15 C 0.34 15.57 5.25 132.90 0.70 16.27 16 16 C -0.18 -6.95 7.85 22.50 0.18 -6.77 16 17 C -0.06 -1.67 10.17 22.45 0.23 -1.45 16 18 C -0.18 -4.39 10.11 22.39 0.23 -4.17 16 19 C 0.10 3.04 11.18 84.67 0.95 3.99 16 20 N -0.53 -23.19 10.39 -192.94 -2.00 -25.19 16 21 C -0.06 -2.23 4.77 -19.86 -0.09 -2.32 16 22 C -0.10 -3.40 8.65 22.27 0.19 -3.21 16 23 C -0.10 -2.95 10.06 22.34 0.22 -2.73 16 24 C 0.02 0.61 7.15 22.59 0.16 0.77 16 25 C 0.03 0.77 7.15 22.59 0.16 0.93 16 26 C -0.09 -2.95 9.68 22.34 0.22 -2.74 16 27 O -0.32 -8.49 11.40 -76.11 -0.87 -9.36 16 28 C 0.20 3.70 8.89 113.37 1.01 4.71 16 29 O -0.32 -8.34 11.40 -76.13 -0.87 -9.20 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 2.08 7.11 -2.39 -0.02 2.07 16 33 H 0.28 14.22 8.32 -92.71 -0.77 13.45 16 34 H 0.12 4.79 8.05 -2.91 -0.02 4.77 16 35 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16 36 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.17 4.31 8.06 -2.91 -0.02 4.28 16 38 H 0.14 4.94 6.78 -2.91 -0.02 4.92 16 39 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 40 H 0.14 4.07 7.94 -2.91 -0.02 4.05 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -77.55 363.35 4.77 -72.78 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 1.06 Total: 18.35 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 6.39 Total: 4.74 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -2.94 Total: -93.73 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -1.78 Total: -50.54 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.04 Total: 48.39 kcal Total: -77.55 4.77 -72.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527053132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.911 kcal (2) G-P(sol) polarization free energy of solvation -77.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds