Wall clock time and date at job start Tue Mar 31 2020 23:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34710 * 116.99931 * 2 1 4 4 O 1.21464 * 120.00141 * 359.97438 * 3 2 1 5 5 C 1.47734 * 119.99841 * 180.02562 * 3 2 1 6 6 C 1.39623 * 120.14453 * 179.97438 * 5 3 2 7 7 C 1.37948 * 119.84428 * 180.02562 * 6 5 3 8 8 C 1.38368 * 120.15200 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.85081 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.46960 * 90.00445 * 9 8 7 11 11 O 1.21276 * 120.00275 * 4.99558 * 10 9 8 12 12 N 1.34775 * 119.99924 * 185.00202 * 10 9 8 13 13 C 1.37213 * 120.00205 * 4.96679 * 12 10 9 14 14 H 1.07996 * 119.99886 * 50.16992 * 13 12 10 15 15 C 1.38892 * 120.00144 * 230.16859 * 13 12 10 16 16 N 1.31419 * 120.00004 * 7.36279 * 15 13 12 17 17 Si 1.86799 * 120.00013 * 187.36007 * 15 13 12 18 18 H 1.48497 * 109.47305 * 90.00112 * 17 15 13 19 19 H 1.48507 * 109.46995 * 210.00163 * 17 15 13 20 20 H 1.48499 * 109.47273 * 329.99916 * 17 15 13 21 21 C 1.39427 * 120.00167 * 184.97310 * 12 10 9 22 22 C 1.39072 * 119.69904 * 184.99766 * 21 12 10 23 23 C 1.38381 * 119.09610 * 180.02562 * 22 21 12 24 24 C 1.38823 * 118.49516 * 0.02562 * 23 22 21 25 25 C 1.38144 * 119.31226 * 0.24922 * 24 23 22 26 26 N 1.31879 * 120.85056 * 359.47734 * 25 24 23 27 27 C 1.38362 * 120.29891 * 0.23884 * 8 7 6 28 28 C 1.37948 * 120.15293 * 359.48303 * 27 8 7 29 29 H 1.09006 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47571 * 299.99914 * 1 2 3 31 31 H 1.08995 * 109.47272 * 60.00852 * 1 2 3 32 32 H 1.07998 * 120.08161 * 0.02562 * 6 5 3 33 33 H 1.08007 * 119.92243 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.47106 * 330.00208 * 9 8 7 35 35 H 1.08993 * 109.47309 * 210.00696 * 9 8 7 36 36 H 0.96993 * 119.99758 * 174.99028 * 16 15 13 37 37 H 1.07997 * 120.44887 * 0.03843 * 22 21 12 38 38 H 1.08001 * 120.75269 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.34513 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.57524 * 179.75134 * 25 24 23 41 41 H 1.08008 * 119.92486 * 179.71478 * 27 8 7 42 42 H 1.08002 * 120.07532 * 180.25487 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1759 2.5200 -0.0011 7 6 5.5538 2.5850 -0.0022 8 6 6.3044 1.4226 -0.0033 9 6 7.8093 1.5014 -0.0050 10 6 8.3125 1.5274 1.4152 11 8 7.5352 1.3948 2.3365 12 7 9.6266 1.6981 1.6615 13 6 10.4915 1.9499 0.6265 14 1 10.2685 2.7303 -0.0859 15 6 11.6540 1.2012 0.4951 16 7 11.8563 0.1601 1.2712 17 14 12.9297 1.6739 -0.7849 18 1 13.9037 2.6217 -0.1866 19 1 13.6435 0.4558 -1.2457 20 1 12.2562 2.3196 -1.9402 21 6 10.1071 1.6186 2.9679 22 6 11.4443 1.8983 3.2284 23 6 11.9080 1.8152 4.5295 24 6 11.0152 1.4532 5.5290 25 6 9.7015 1.1837 5.1973 26 7 9.2866 1.2763 3.9489 27 6 5.6795 0.1881 -0.0082 28 6 4.3023 0.1086 -0.0014 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 3.5913 3.4281 -0.0007 33 1 6.0479 3.5454 -0.0022 34 1 8.1250 2.4094 -0.5190 35 1 8.2181 0.6319 -0.5195 36 1 12.6319 -0.4053 1.1317 37 1 12.1115 2.1769 2.4262 38 1 12.9414 2.0262 4.7620 39 1 11.3452 1.3787 6.5547 40 1 9.0043 0.8978 5.9709 41 1 6.2713 -0.7154 -0.0137 42 1 3.8158 -0.8557 -0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537821713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:16 Heat of formation + Delta-G solvation = -34.224817 kcal Electronic energy + Delta-G solvation = -28375.089243 eV Core-core repulsion = 24286.285615 eV Total energy + Delta-G solvation = -4088.803627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56087 -39.84960 -38.88288 -37.65452 -36.45065 -35.12544 -32.73922 -32.14953 -31.03696 -30.88001 -29.56290 -28.39250 -27.00207 -25.33616 -23.49659 -22.55135 -22.35918 -21.83698 -20.61022 -19.31296 -18.09857 -17.94719 -17.10459 -16.41818 -16.30491 -15.71045 -15.31063 -15.10751 -14.96157 -14.64797 -14.59166 -14.24133 -13.99426 -13.55877 -13.53963 -13.35221 -13.15109 -12.92036 -12.67158 -12.26889 -12.18295 -12.05481 -11.78450 -11.56721 -11.37035 -11.31355 -11.12078 -10.92734 -10.83071 -10.79377 -10.52649 -10.50486 -9.42789 -9.12637 -8.95188 -8.82383 -8.70433 -8.63078 -7.93098 -7.05415 -6.49723 -4.58757 0.80795 1.55718 2.23084 2.43516 2.58334 2.63089 2.96970 3.05879 3.08079 3.71907 3.85719 3.93112 4.40305 4.66170 4.69948 4.92592 4.97008 5.01018 5.07745 5.09877 5.18951 5.32569 5.49738 5.51862 5.56565 5.70883 5.85196 5.93180 5.97303 6.05340 6.17230 6.18897 6.27910 6.34812 6.38507 6.43809 6.51484 6.80328 6.83109 7.00943 7.09224 7.15072 7.25229 7.53641 7.69867 7.88902 8.16424 8.76608 8.86180 9.29609 9.73348 10.38620 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.002880 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.165934 B = 9718.803068 C =10982.357720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.513 3.487 4 O -0.514 6.514 5 C -0.144 4.144 6 C -0.052 4.052 7 C -0.122 4.122 8 C -0.008 4.008 9 C -0.093 4.093 10 C 0.495 3.505 11 O -0.515 6.515 12 N -0.387 5.387 13 C -0.364 4.364 14 H 0.099 0.901 15 C 0.052 3.948 16 N -0.843 5.843 17 Si 0.920 3.080 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.264 1.264 21 C 0.386 3.614 22 C -0.142 4.142 23 C -0.081 4.081 24 C -0.237 4.237 25 C 0.106 3.894 26 N -0.495 5.495 27 C -0.118 4.118 28 C -0.059 4.059 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.277 0.723 37 H 0.136 0.864 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 -0.066 -3.664 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.360 3.640 4 O -0.403 6.403 5 C -0.145 4.145 6 C -0.070 4.070 7 C -0.140 4.140 8 C -0.009 4.009 9 C -0.133 4.133 10 C 0.284 3.716 11 O -0.390 6.390 12 N -0.099 5.099 13 C -0.491 4.491 14 H 0.116 0.884 15 C -0.158 4.158 16 N -0.475 5.475 17 Si 0.745 3.255 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.188 1.188 21 C 0.156 3.844 22 C -0.167 4.167 23 C -0.107 4.107 24 C -0.259 4.259 25 C -0.053 4.053 26 N -0.210 5.210 27 C -0.136 4.136 28 C -0.077 4.077 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.153 0.847 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.104 -0.163 -3.434 10.673 hybrid contribution 1.672 0.142 -0.344 1.713 sum -8.432 -0.021 -3.778 9.239 Atomic orbital electron populations 1.23251 0.76297 1.03616 1.02521 1.86559 1.23315 1.32904 1.84442 1.21334 0.89302 0.81209 0.72203 1.90802 1.66924 1.36064 1.46544 1.18957 0.88331 0.95284 1.11952 1.21129 0.94453 0.96366 0.95084 1.20979 0.92978 0.98580 1.01461 1.19966 0.95488 0.93158 0.92275 1.20610 0.89983 1.05819 0.96876 1.20594 0.82876 0.78080 0.90049 1.90705 1.55163 1.47355 1.45778 1.41139 1.06189 1.59661 1.02943 1.19420 1.03049 1.20027 1.06597 0.88386 1.25628 0.98940 0.94356 0.96847 1.69966 1.28690 1.13018 1.35848 0.86040 0.80407 0.78501 0.80587 1.19765 1.20508 1.18846 1.18793 0.89117 0.91213 0.85300 1.21509 0.95827 1.02851 0.96464 1.21151 0.98679 0.98039 0.92796 1.21639 0.95660 1.09338 0.99265 1.22259 0.93548 0.96523 0.92934 1.67590 1.37314 1.16397 0.99743 1.21043 0.94054 0.97830 1.00721 1.21344 0.93770 0.97558 0.95071 0.88077 0.91894 0.91944 0.84891 0.85147 0.88114 0.87551 0.91286 0.84653 0.86709 0.86923 0.84542 0.85156 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.41 9.82 -40.52 -0.40 -4.81 16 3 C 0.51 7.48 7.90 34.61 0.27 7.75 16 4 O -0.51 -8.40 16.14 -19.24 -0.31 -8.71 16 5 C -0.14 -2.13 5.87 -104.98 -0.62 -2.75 16 6 C -0.05 -0.77 9.60 -39.17 -0.38 -1.14 16 7 C -0.12 -1.85 9.68 -39.64 -0.38 -2.24 16 8 C -0.01 -0.14 4.39 -104.53 -0.46 -0.59 16 9 C -0.09 -1.66 4.74 -29.04 -0.14 -1.80 16 10 C 0.50 11.41 7.57 -10.99 -0.08 11.33 16 11 O -0.51 -13.18 14.34 5.56 0.08 -13.10 16 12 N -0.39 -9.44 2.68 -60.71 -0.16 -9.61 16 13 C -0.36 -8.33 7.67 -14.90 -0.11 -8.44 16 14 H 0.10 2.07 7.36 -52.49 -0.39 1.68 16 15 C 0.05 1.18 3.59 -17.49 -0.06 1.12 16 16 N -0.84 -20.79 11.12 55.49 0.62 -20.17 16 17 Si 0.92 17.40 29.56 -169.99 -5.03 12.38 16 18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 21 C 0.39 9.71 6.63 -154.63 -1.02 8.69 16 22 C -0.14 -3.29 7.61 -39.22 -0.30 -3.59 16 23 C -0.08 -1.61 10.17 -39.31 -0.40 -2.01 16 24 C -0.24 -4.50 10.11 -39.40 -0.40 -4.89 16 25 C 0.11 2.24 11.18 -17.57 -0.20 2.05 16 26 N -0.49 -12.40 7.92 -12.34 -0.10 -12.50 16 27 C -0.12 -1.82 9.68 -39.64 -0.38 -2.20 16 28 C -0.06 -0.83 9.62 -39.17 -0.38 -1.21 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.13 1.80 7.65 -52.49 -0.40 1.39 16 33 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.10 1.60 7.48 -51.93 -0.39 1.22 16 35 H 0.11 1.83 8.08 -51.93 -0.42 1.41 16 36 H 0.28 6.47 8.32 -40.82 -0.34 6.13 16 37 H 0.14 3.18 5.55 -52.49 -0.29 2.89 16 38 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.14 2.45 8.06 -52.49 -0.42 2.03 16 41 H 0.13 1.87 8.06 -52.48 -0.42 1.44 16 42 H 0.13 1.59 7.61 -52.49 -0.40 1.19 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -31.23 366.20 -8.55 -39.78 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.80 Total: 9.76 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -3.97 Total: 1.47 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.36 Total: -42.28 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.63 Total: -26.62 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.23 -8.55 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537821713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.556 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds