Wall clock time and date at job start Tue Mar 31 2020 23:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47672 * 0.26794 * 3 2 1 5 5 C 1.37095 * 120.00148 * 264.23360 * 4 3 2 6 6 H 1.08003 * 120.00310 * 197.72547 * 5 4 3 7 7 C 1.38948 * 120.00164 * 17.72090 * 5 4 3 8 8 N 1.31414 * 119.99640 * 21.39444 * 7 5 4 9 9 Si 1.86795 * 120.00341 * 201.40007 * 7 5 4 10 10 H 1.48495 * 109.47214 * 59.99777 * 9 7 5 11 11 H 1.48505 * 109.47411 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47208 * 299.99942 * 9 7 5 13 13 C 1.34781 * 119.99993 * 84.23208 * 4 3 2 14 14 O 1.21288 * 119.99960 * 180.02562 * 13 4 3 15 15 C 1.50692 * 119.99805 * 0.02562 * 13 4 3 16 16 C 1.53008 * 109.47094 * 180.02562 * 15 13 4 17 17 N 1.46501 * 109.47041 * 179.97438 * 16 15 13 18 18 C 1.34781 * 119.99752 * 179.97438 * 17 16 15 19 19 O 1.21647 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.47063 * 119.99904 * 180.02562 * 18 17 16 21 21 C 1.35861 * 125.43057 * 180.02562 * 20 18 17 22 22 C 1.41588 * 107.72578 * 180.02562 * 21 20 18 23 23 C 1.40099 * 133.37351 * 180.02562 * 22 21 20 24 24 C 1.36435 * 119.83034 * 179.97438 * 23 22 21 25 25 C 1.38943 * 120.61183 * 0.06326 * 24 23 22 26 26 C 1.37670 * 120.65186 * 359.90254 * 25 24 23 27 27 C 1.39227 * 119.80696 * 0.06201 * 26 25 24 28 28 N 1.37482 * 133.17983 * 179.97438 * 27 26 25 29 29 H 0.97000 * 125.60785 * 0.04314 * 28 27 26 30 30 H 1.09005 * 109.47066 * 240.26655 * 3 2 1 31 31 H 1.09002 * 109.47252 * 120.27043 * 3 2 1 32 32 H 0.97001 * 119.99849 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47727 * 60.00374 * 15 13 4 34 34 H 1.09004 * 109.47544 * 300.00013 * 15 13 4 35 35 H 1.08995 * 109.47136 * 60.00144 * 16 15 13 36 36 H 1.08998 * 109.46868 * 299.99888 * 16 15 13 37 37 H 0.96996 * 120.00311 * 0.02562 * 17 16 15 38 38 H 1.08007 * 126.13705 * 359.96717 * 21 20 18 39 39 H 1.08001 * 120.08950 * 0.02562 * 23 22 21 40 40 H 1.07999 * 119.69556 * 180.02562 * 24 23 22 41 41 H 1.08007 * 119.67630 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.09680 * 180.33632 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0970 -1.3802 -0.0065 5 6 3.4383 -1.9921 1.1719 6 1 4.0552 -2.8786 1.1613 7 6 2.9907 -1.4718 2.3801 8 7 1.9369 -0.6870 2.4073 9 14 3.8867 -1.8876 3.9655 10 1 5.2944 -1.4237 3.8747 11 1 3.2159 -1.2119 5.1051 12 1 3.8625 -3.3573 4.1769 13 6 3.2114 -2.0492 -1.1709 14 8 3.6159 -3.1926 -1.1762 15 6 2.8368 -1.3764 -2.4663 16 6 3.0578 -2.3475 -3.6279 17 7 2.6930 -1.6937 -4.8871 18 6 2.8073 -2.3627 -6.0515 19 8 3.2129 -3.5095 -6.0569 20 6 2.4416 -1.7062 -7.3157 21 6 2.5127 -2.2745 -8.5476 22 6 2.0741 -1.3144 -9.4913 23 6 1.9323 -1.3300 -10.8850 24 6 1.4719 -0.2211 -11.5329 25 6 1.1425 0.9271 -10.8233 26 6 1.2724 0.9671 -9.4533 27 6 1.7395 -0.1521 -8.7695 28 7 1.9719 -0.4130 -7.4398 29 1 1.8291 0.2086 -6.7089 30 1 2.9711 0.5105 0.8924 31 1 2.9711 0.5189 -0.8876 32 1 1.6242 -0.3241 3.2507 33 1 3.4571 -0.4917 -2.6089 34 1 1.7875 -1.0830 -2.4332 35 1 2.4371 -3.2320 -3.4851 36 1 4.1069 -2.6413 -3.6612 37 1 2.3699 -0.7791 -4.8829 38 1 2.8450 -3.2783 -8.7678 39 1 2.1860 -2.2179 -11.4451 40 1 1.3631 -0.2357 -12.6073 41 1 0.7798 1.7966 -11.3516 42 1 1.0086 1.8626 -8.9102 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542735170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:05 Heat of formation + Delta-G solvation = 26.956842 kcal Electronic energy + Delta-G solvation = -27365.632993 eV Core-core repulsion = 23311.775152 eV Total energy + Delta-G solvation = -4053.857841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.84480 -39.60630 -38.90421 -37.04772 -36.03148 -35.20098 -34.40794 -32.47448 -32.06197 -30.96040 -29.63798 -29.15626 -27.55958 -25.69497 -24.31781 -22.72758 -22.43477 -21.40631 -20.43082 -19.36452 -18.51809 -18.00848 -17.39660 -16.79354 -16.52284 -16.12850 -15.77695 -15.51933 -14.95070 -14.88302 -14.55545 -14.37171 -14.23206 -14.09892 -14.04694 -13.57192 -13.15059 -13.12504 -12.97824 -12.74446 -12.11926 -12.04296 -11.92801 -11.81903 -11.56295 -11.44926 -11.29609 -11.24470 -11.12527 -10.66778 -10.50495 -10.39550 -10.31498 -10.19889 -9.35327 -9.20163 -8.75712 -8.55688 -8.15160 -8.08671 -6.59865 -4.09270 0.48883 1.30505 1.87360 2.58258 2.90285 3.06072 3.17310 3.18125 3.19813 3.43503 3.59959 3.67339 3.85135 4.04269 4.35288 4.47394 4.67026 4.69895 4.79719 4.79830 4.98945 5.02023 5.07191 5.10560 5.22059 5.28956 5.41872 5.44042 5.66208 5.68540 5.72265 5.95318 6.09914 6.11686 6.13176 6.17149 6.29220 6.36203 6.38422 6.39177 6.75037 7.02750 7.30706 7.38983 7.78210 7.98049 8.17497 8.61237 8.89748 9.08700 9.60792 10.46271 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023970 B = 0.002000 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.831205 B =13997.512963 C =14903.291217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.244 3.756 3 C 0.221 3.779 4 N -0.440 5.440 5 C -0.315 4.315 6 H 0.110 0.890 7 C 0.032 3.968 8 N -0.877 5.877 9 Si 0.929 3.071 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.458 3.542 14 O -0.568 6.568 15 C -0.150 4.150 16 C 0.138 3.862 17 N -0.726 5.726 18 C 0.580 3.420 19 O -0.516 6.516 20 C 0.021 3.979 21 C -0.108 4.108 22 C -0.119 4.119 23 C -0.060 4.060 24 C -0.151 4.151 25 C -0.090 4.090 26 C -0.132 4.132 27 C 0.112 3.888 28 N -0.579 5.579 29 H 0.418 0.582 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.275 0.725 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.393 0.607 38 H 0.157 0.843 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 8.768 -21.915 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.075 4.075 3 C 0.093 3.907 4 N -0.161 5.161 5 C -0.442 4.442 6 H 0.127 0.873 7 C -0.172 4.172 8 N -0.516 5.516 9 Si 0.755 3.245 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.246 3.754 14 O -0.451 6.451 15 C -0.191 4.191 16 C 0.015 3.985 17 N -0.377 5.377 18 C 0.365 3.635 19 O -0.391 6.391 20 C -0.088 4.088 21 C -0.135 4.135 22 C -0.124 4.124 23 C -0.079 4.079 24 C -0.170 4.170 25 C -0.109 4.109 26 C -0.153 4.153 27 C 0.002 3.998 28 N -0.183 5.183 29 H 0.256 0.744 30 H 0.146 0.854 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.226 0.774 38 H 0.174 0.826 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.263 7.470 -21.536 22.796 hybrid contribution 0.278 0.846 1.498 1.743 sum 0.015 8.315 -20.037 21.694 Atomic orbital electron populations 1.80916 1.13580 1.08410 1.12170 1.29325 0.95376 0.92539 0.90219 1.18750 0.81590 0.86556 1.03809 1.43626 1.56390 1.09866 1.06195 1.19694 1.30122 1.13073 0.81318 0.87273 1.25296 0.94938 0.97142 0.99785 1.69843 1.19744 1.33717 1.28297 0.85935 0.79450 0.79059 0.80012 1.19637 1.21002 1.19732 1.19752 0.84416 0.86755 0.84516 1.90593 1.50084 1.17758 1.86628 1.21791 1.03086 0.99716 0.94461 1.21141 1.02508 0.95352 0.79458 1.45981 1.67583 1.17109 1.07068 1.17161 0.78527 0.85842 0.81928 1.90886 1.45514 1.16436 1.86253 1.20242 1.07668 0.85377 0.95523 1.20936 1.03156 0.99988 0.89437 1.18225 1.06321 0.93996 0.93870 1.20428 0.97224 0.98484 0.91754 1.20644 1.02884 0.93505 0.99978 1.20885 0.98878 0.98239 0.92916 1.20089 1.04603 0.96288 0.94329 1.18344 1.01800 0.96447 0.83215 1.41952 1.57035 1.12496 1.06843 0.74398 0.85394 0.89867 0.91483 0.89299 0.89719 0.90170 0.89965 0.77361 0.82557 0.85695 0.85887 0.85582 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.55 18.54 42.15 0.78 -9.77 16 2 C 0.24 5.00 12.95 -20.76 -0.27 4.73 16 3 C 0.22 3.98 4.91 -6.83 -0.03 3.95 16 4 N -0.44 -9.62 2.60 -117.94 -0.31 -9.93 16 5 C -0.32 -7.79 9.32 -14.93 -0.14 -7.93 16 6 H 0.11 2.87 7.39 -52.48 -0.39 2.48 16 7 C 0.03 0.77 4.87 -17.47 -0.08 0.68 16 8 N -0.88 -21.33 9.48 55.50 0.53 -20.81 16 9 Si 0.93 19.09 29.60 -169.99 -5.03 14.06 16 10 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.46 9.61 7.57 -10.99 -0.08 9.52 16 14 O -0.57 -14.19 15.63 5.55 0.09 -14.10 16 15 C -0.15 -2.21 4.42 -27.88 -0.12 -2.33 16 16 C 0.14 2.08 4.96 -4.04 -0.02 2.06 16 17 N -0.73 -8.54 5.55 -61.49 -0.34 -8.88 16 18 C 0.58 7.91 7.80 -12.68 -0.10 7.81 16 19 O -0.52 -9.07 16.84 5.24 0.09 -8.98 16 20 C 0.02 0.24 6.97 -82.29 -0.57 -0.33 16 21 C -0.11 -1.24 10.53 -39.16 -0.41 -1.65 16 22 C -0.12 -1.25 6.16 -106.93 -0.66 -1.91 16 23 C -0.06 -0.51 10.06 -39.53 -0.40 -0.91 16 24 C -0.15 -1.10 9.97 -39.97 -0.40 -1.49 16 25 C -0.09 -0.63 10.01 -39.53 -0.40 -1.02 16 26 C -0.13 -1.03 10.08 -39.42 -0.40 -1.43 16 27 C 0.11 1.08 7.25 -83.98 -0.61 0.47 16 28 N -0.58 -5.12 6.07 -7.36 -0.04 -5.16 16 29 H 0.42 2.46 8.12 -40.82 -0.33 2.12 16 30 H 0.13 2.40 6.46 -51.93 -0.34 2.07 16 31 H 0.08 1.06 6.68 -51.93 -0.35 0.72 16 32 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 33 H 0.09 1.00 7.42 -51.93 -0.39 0.61 16 34 H 0.08 1.20 7.51 -51.93 -0.39 0.81 16 35 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 36 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 37 H 0.39 3.23 7.53 -40.82 -0.31 2.92 16 38 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -33.56 369.36 -7.95 -41.51 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.57 Total: 6.28 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: -4.69 Total: 10.21 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.61 Total: -54.54 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.17 Total: -23.08 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.56 -7.95 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542735170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.464 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds