Wall clock time and date at job start Tue Mar 31 2020 23:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47672 * 0.26794 * 3 2 1 5 5 C 1.37095 * 120.00148 * 264.23360 * 4 3 2 6 6 H 1.08003 * 120.00310 * 197.72547 * 5 4 3 7 7 C 1.38948 * 120.00164 * 17.72090 * 5 4 3 8 8 N 1.31414 * 119.99640 * 21.39444 * 7 5 4 9 9 Si 1.86795 * 120.00341 * 201.40007 * 7 5 4 10 10 H 1.48495 * 109.47214 * 59.99777 * 9 7 5 11 11 H 1.48505 * 109.47411 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47208 * 299.99942 * 9 7 5 13 13 C 1.34781 * 119.99993 * 84.23208 * 4 3 2 14 14 O 1.21288 * 119.99960 * 180.02562 * 13 4 3 15 15 C 1.50692 * 119.99805 * 0.02562 * 13 4 3 16 16 C 1.53008 * 109.47094 * 180.02562 * 15 13 4 17 17 N 1.46501 * 109.47041 * 179.97438 * 16 15 13 18 18 C 1.34781 * 119.99752 * 179.97438 * 17 16 15 19 19 O 1.21647 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.47063 * 119.99904 * 180.02562 * 18 17 16 21 21 C 1.35861 * 125.43057 * 180.02562 * 20 18 17 22 22 C 1.41588 * 107.72578 * 180.02562 * 21 20 18 23 23 C 1.40099 * 133.37351 * 180.02562 * 22 21 20 24 24 C 1.36435 * 119.83034 * 179.97438 * 23 22 21 25 25 C 1.38943 * 120.61183 * 0.06326 * 24 23 22 26 26 C 1.37670 * 120.65186 * 359.90254 * 25 24 23 27 27 C 1.39227 * 119.80696 * 0.06201 * 26 25 24 28 28 N 1.37482 * 133.17983 * 179.97438 * 27 26 25 29 29 H 0.97000 * 125.60785 * 0.04314 * 28 27 26 30 30 H 1.09005 * 109.47066 * 240.26655 * 3 2 1 31 31 H 1.09002 * 109.47252 * 120.27043 * 3 2 1 32 32 H 0.97001 * 119.99849 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47727 * 60.00374 * 15 13 4 34 34 H 1.09004 * 109.47544 * 300.00013 * 15 13 4 35 35 H 1.08995 * 109.47136 * 60.00144 * 16 15 13 36 36 H 1.08998 * 109.46868 * 299.99888 * 16 15 13 37 37 H 0.96996 * 120.00311 * 0.02562 * 17 16 15 38 38 H 1.08007 * 126.13705 * 359.96717 * 21 20 18 39 39 H 1.08001 * 120.08950 * 0.02562 * 23 22 21 40 40 H 1.07999 * 119.69556 * 180.02562 * 24 23 22 41 41 H 1.08007 * 119.67630 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.09680 * 180.33632 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0970 -1.3802 -0.0065 5 6 3.4383 -1.9921 1.1719 6 1 4.0552 -2.8786 1.1613 7 6 2.9907 -1.4718 2.3801 8 7 1.9369 -0.6870 2.4073 9 14 3.8867 -1.8876 3.9655 10 1 5.2944 -1.4237 3.8747 11 1 3.2159 -1.2119 5.1051 12 1 3.8625 -3.3573 4.1769 13 6 3.2114 -2.0492 -1.1709 14 8 3.6159 -3.1926 -1.1762 15 6 2.8368 -1.3764 -2.4663 16 6 3.0578 -2.3475 -3.6279 17 7 2.6930 -1.6937 -4.8871 18 6 2.8073 -2.3627 -6.0515 19 8 3.2129 -3.5095 -6.0569 20 6 2.4416 -1.7062 -7.3157 21 6 2.5127 -2.2745 -8.5476 22 6 2.0741 -1.3144 -9.4913 23 6 1.9323 -1.3300 -10.8850 24 6 1.4719 -0.2211 -11.5329 25 6 1.1425 0.9271 -10.8233 26 6 1.2724 0.9671 -9.4533 27 6 1.7395 -0.1521 -8.7695 28 7 1.9719 -0.4130 -7.4398 29 1 1.8291 0.2086 -6.7089 30 1 2.9711 0.5105 0.8924 31 1 2.9711 0.5189 -0.8876 32 1 1.6242 -0.3241 3.2507 33 1 3.4571 -0.4917 -2.6089 34 1 1.7875 -1.0830 -2.4332 35 1 2.4371 -3.2320 -3.4851 36 1 4.1069 -2.6413 -3.6612 37 1 2.3699 -0.7791 -4.8829 38 1 2.8450 -3.2783 -8.7678 39 1 2.1860 -2.2179 -11.4451 40 1 1.3631 -0.2357 -12.6073 41 1 0.7798 1.7966 -11.3516 42 1 1.0086 1.8626 -8.9102 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542735170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:04 Heat of formation + Delta-G solvation = 4.360868 kcal Electronic energy + Delta-G solvation = -27366.612828 eV Core-core repulsion = 23311.775152 eV Total energy + Delta-G solvation = -4054.837675 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.58989 -40.88749 -40.32308 -37.73361 -37.64737 -36.51809 -36.06872 -33.82925 -33.14963 -32.18994 -30.37313 -29.92519 -29.13892 -27.17715 -25.52807 -23.82308 -23.13835 -22.19011 -21.47165 -20.72042 -19.78172 -19.39329 -18.39554 -18.07757 -18.00841 -16.97464 -16.94154 -16.67902 -16.29563 -16.03279 -15.92699 -15.54561 -15.20990 -15.03991 -14.74847 -14.72726 -14.59087 -14.41128 -14.28001 -13.84094 -13.80234 -13.41566 -13.15548 -12.97735 -12.84712 -12.59612 -12.58762 -12.48154 -12.33563 -12.14239 -12.04260 -11.81075 -11.49446 -11.12153 -10.90233 -10.48993 -10.35469 -9.93787 -9.23182 -8.77004 -8.42409 -5.97376 -0.25601 0.68878 1.06497 1.39766 1.48229 1.56033 1.72028 1.82695 1.96951 2.07854 2.21235 2.25762 2.36320 2.97760 2.98964 3.14676 3.57353 3.60256 3.76646 3.78533 4.00425 4.09743 4.11890 4.22578 4.38081 4.42568 4.49245 4.59016 4.66606 4.79577 4.86218 4.91248 4.94061 4.94901 5.15682 5.17779 5.47576 5.48260 5.55845 5.67033 5.71967 6.01263 6.13319 6.30873 6.38421 6.50070 6.96341 7.01542 7.11335 7.33916 7.89831 8.60892 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023970 B = 0.002000 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.831205 B =13997.512963 C =14903.291217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.257 3.743 3 C 0.219 3.781 4 N -0.453 5.453 5 C -0.341 4.341 6 H 0.081 0.919 7 C 0.007 3.993 8 N -0.891 5.891 9 Si 0.984 3.016 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.286 1.286 13 C 0.450 3.550 14 O -0.619 6.619 15 C -0.132 4.132 16 C 0.149 3.851 17 N -0.707 5.707 18 C 0.582 3.418 19 O -0.565 6.565 20 C 0.008 3.992 21 C -0.119 4.119 22 C -0.146 4.146 23 C -0.075 4.075 24 C -0.150 4.150 25 C -0.086 4.086 26 C -0.139 4.139 27 C 0.104 3.896 28 N -0.565 5.565 29 H 0.432 0.568 30 H 0.123 0.877 31 H 0.148 0.852 32 H 0.275 0.725 33 H 0.140 0.860 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.415 0.585 38 H 0.151 0.849 39 H 0.136 0.864 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 12.073 -23.562 26.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.061 4.061 3 C 0.093 3.907 4 N -0.173 5.173 5 C -0.469 4.469 6 H 0.099 0.901 7 C -0.196 4.196 8 N -0.529 5.529 9 Si 0.809 3.191 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.212 1.212 13 C 0.240 3.760 14 O -0.504 6.504 15 C -0.172 4.172 16 C 0.025 3.975 17 N -0.359 5.359 18 C 0.369 3.631 19 O -0.444 6.444 20 C -0.102 4.102 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.093 4.093 24 C -0.169 4.169 25 C -0.105 4.105 26 C -0.160 4.160 27 C -0.007 4.007 28 N -0.171 5.171 29 H 0.273 0.727 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.085 0.915 33 H 0.158 0.842 34 H 0.119 0.881 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.252 0.748 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.173 0.827 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.592 10.866 -23.175 25.603 hybrid contribution 0.340 -0.181 1.878 1.917 sum -0.252 10.685 -21.297 23.828 Atomic orbital electron populations 1.80927 1.14828 1.09554 1.13597 1.29800 0.95830 0.91399 0.89026 1.19156 0.79988 0.84842 1.06706 1.43792 1.56444 1.11393 1.05636 1.19556 1.30884 1.13209 0.83212 0.90142 1.25840 0.95162 0.96911 1.01647 1.69920 1.20115 1.34139 1.28744 0.85122 0.79099 0.77834 0.77073 1.18424 1.20485 1.21170 1.20777 0.82704 0.86370 0.86178 1.90569 1.51926 1.20272 1.87651 1.21690 1.04807 1.00412 0.90323 1.20786 1.00868 0.94870 0.81025 1.45657 1.66929 1.17841 1.05466 1.17440 0.77565 0.85284 0.82823 1.90858 1.47847 1.18649 1.87000 1.19798 1.09473 0.86691 0.94212 1.21077 1.03212 1.00227 0.90168 1.18444 1.07487 0.94224 0.94825 1.20690 0.97682 0.99731 0.91240 1.21019 1.01543 0.93018 1.01346 1.21335 0.97360 0.98995 0.92817 1.20438 1.04229 0.96440 0.94877 1.18647 1.01867 0.96879 0.83262 1.41797 1.56414 1.11614 1.07316 0.72748 0.85900 0.83465 0.91534 0.84234 0.88144 0.93412 0.91642 0.74836 0.83159 0.84632 0.83455 0.82655 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.14 18.54 20.00 0.37 -21.76 16 2 C 0.26 10.05 12.95 89.44 1.16 11.21 16 3 C 0.22 7.35 4.91 84.57 0.42 7.77 16 4 N -0.45 -19.43 2.60 -645.43 -1.68 -21.11 16 5 C -0.34 -17.07 9.32 84.04 0.78 -16.29 16 6 H 0.08 4.42 7.39 -2.91 -0.02 4.40 16 7 C 0.01 0.32 4.87 84.93 0.41 0.74 16 8 N -0.89 -42.73 9.48 21.66 0.21 -42.52 16 9 Si 0.98 39.11 29.60 68.60 2.03 41.14 16 10 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 11 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 12 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 13 C 0.45 18.70 7.57 87.65 0.66 19.36 16 14 O -0.62 -31.93 15.63 -3.05 -0.05 -31.97 16 15 C -0.13 -3.58 4.42 29.85 0.13 -3.44 16 16 C 0.15 4.44 4.96 86.38 0.43 4.87 16 17 N -0.71 -15.80 5.55 -466.70 -2.59 -18.39 16 18 C 0.58 16.03 7.80 86.56 0.68 16.71 16 19 O -0.56 -20.87 16.84 -4.18 -0.07 -20.94 16 20 C 0.01 0.18 6.97 39.91 0.28 0.46 16 21 C -0.12 -2.79 10.53 22.54 0.24 -2.55 16 22 C -0.15 -2.94 6.16 -21.36 -0.13 -3.07 16 23 C -0.07 -1.18 10.06 22.30 0.22 -0.95 16 24 C -0.15 -1.76 9.97 22.02 0.22 -1.54 16 25 C -0.09 -0.89 10.01 22.30 0.22 -0.67 16 26 C -0.14 -1.74 10.08 22.37 0.23 -1.51 16 27 C 0.10 1.81 7.25 39.13 0.28 2.09 16 28 N -0.57 -9.05 6.07 -177.19 -1.08 -10.12 16 29 H 0.43 3.93 8.12 -92.71 -0.75 3.18 16 30 H 0.12 4.34 6.46 -2.38 -0.02 4.33 16 31 H 0.15 3.00 6.68 -2.39 -0.02 2.99 16 32 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 33 H 0.14 2.41 7.42 -2.39 -0.02 2.40 16 34 H 0.10 2.51 7.51 -2.38 -0.02 2.49 16 35 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 36 H 0.07 2.20 8.10 -2.39 -0.02 2.18 16 37 H 0.41 5.63 7.53 -92.71 -0.70 4.93 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 39 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 42 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -77.53 369.36 3.03 -74.50 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -0.34 Total: 18.01 kcal Atomic # 6 Polarization: 26.95 SS G_CDS: 6.23 Total: 33.17 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -4.77 Total: -113.91 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: -0.12 Total: -52.92 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -77.53 3.03 -74.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542735170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.860 kcal (2) G-P(sol) polarization free energy of solvation -77.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds