Wall clock time and date at job start Tue Mar 31 2020 23:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00212 * 2 1 4 4 C 1.53002 * 109.47220 * 270.00305 * 3 2 1 5 5 C 1.53000 * 109.47000 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47250 * 180.02562 * 5 4 3 7 7 O 1.20828 * 119.99505 * 359.97438 * 6 5 4 8 8 O 1.34230 * 120.00114 * 180.02562 * 6 5 4 9 9 C 1.34777 * 119.99833 * 180.02562 * 2 1 3 10 10 O 1.21600 * 119.99625 * 180.02562 * 9 2 1 11 11 N 1.34780 * 120.00245 * 0.27238 * 9 2 1 12 12 C 1.40133 * 119.99835 * 174.02307 * 11 9 2 13 13 C 1.38694 * 120.07926 * 335.22433 * 12 11 9 14 14 C 1.38199 * 120.02128 * 179.71920 * 13 12 11 15 15 C 1.38545 * 120.17228 * 0.55492 * 14 13 12 16 16 F 1.35101 * 119.92187 * 179.74393 * 15 14 13 17 17 C 1.38343 * 120.15460 * 359.72385 * 15 14 13 18 18 C 1.38740 * 119.97108 * 359.97438 * 17 15 14 19 19 O 1.35787 * 120.08265 * 180.02562 * 18 17 15 20 20 C 1.34808 * 116.99873 * 5.19326 * 19 18 17 21 21 H 1.08003 * 120.00234 * 354.97870 * 20 19 18 22 22 C 1.38635 * 120.00004 * 174.97970 * 20 19 18 23 23 N 1.31575 * 119.99767 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00124 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47034 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47037 * 120.00017 * 24 22 20 27 27 H 1.48502 * 109.47039 * 240.00045 * 24 22 20 28 28 H 1.08990 * 109.46931 * 269.99499 * 1 2 3 29 29 H 1.08999 * 109.46973 * 29.99840 * 1 2 3 30 30 H 1.09006 * 109.46946 * 149.99964 * 1 2 3 31 31 H 1.09003 * 109.46818 * 30.00115 * 3 2 1 32 32 H 1.09001 * 109.47036 * 150.00083 * 3 2 1 33 33 H 1.08998 * 109.46628 * 299.99498 * 4 3 2 34 34 H 1.09001 * 109.47297 * 59.99938 * 4 3 2 35 35 H 1.09003 * 109.46915 * 299.99735 * 5 4 3 36 36 H 1.08991 * 109.47555 * 59.99450 * 5 4 3 37 37 H 0.96700 * 117.00106 * 179.97438 * 8 6 5 38 38 H 0.96991 * 119.99527 * 354.02766 * 11 9 2 39 39 H 1.07999 * 119.98580 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.91368 * 180.25718 * 14 13 12 41 41 H 1.07997 * 120.01510 * 180.02562 * 17 15 14 42 42 H 0.97007 * 120.00005 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0351 -1.4424 6 6 3.4687 3.4705 -2.8632 7 8 3.0757 2.7908 -3.7816 8 8 4.1294 4.6130 -3.1085 9 6 2.1389 -1.1672 -0.0005 10 8 3.3549 -1.1672 -0.0001 11 7 1.4650 -2.3345 -0.0066 12 6 2.1605 -3.5444 -0.1335 13 6 3.4036 -3.5704 -0.7481 14 6 4.0910 -4.7633 -0.8675 15 6 3.5368 -5.9377 -0.3846 16 9 4.2110 -7.1019 -0.5086 17 6 2.2948 -5.9210 0.2245 18 6 1.6020 -4.7259 0.3532 19 8 0.3831 -4.7068 0.9512 20 6 -0.0505 -5.8621 1.4939 21 1 0.5266 -6.7667 1.3708 22 6 -1.2373 -5.8891 2.2100 23 7 -1.9402 -4.7870 2.3603 24 14 -1.8386 -7.4901 2.9614 25 1 -0.8738 -8.5756 2.6511 26 1 -1.9509 -7.3344 4.4340 27 1 -3.1686 -7.8331 2.3970 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 3.0416 0.9508 -1.9563 34 1 1.5001 1.8408 -1.9563 35 1 2.6294 3.7949 -0.9284 36 1 4.1705 2.9044 -0.9288 37 1 4.2664 4.8505 -4.0358 38 1 0.4987 -2.3369 0.0768 39 1 3.8362 -2.6575 -1.1298 40 1 5.0607 -4.7809 -1.3426 41 1 1.8651 -6.8377 0.6004 42 1 -2.7708 -4.8060 2.8611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593744653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:30 Heat of formation + Delta-G solvation = -159.238738 kcal Electronic energy + Delta-G solvation = -29077.628444 eV Core-core repulsion = 24552.634582 eV Total energy + Delta-G solvation = -4524.993863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.20815 -40.60645 -40.35784 -38.89320 -36.80667 -36.43568 -35.70529 -34.36807 -33.27304 -32.39026 -29.41411 -28.76054 -27.81062 -26.18121 -25.48221 -23.48820 -22.26981 -21.50624 -20.96765 -19.63496 -18.43910 -18.32700 -18.23239 -17.41987 -16.98667 -16.57414 -16.49714 -15.71445 -15.27804 -15.20736 -14.97014 -14.93356 -14.61389 -14.26576 -13.84726 -13.67743 -13.54601 -13.41047 -13.35912 -12.96386 -12.71262 -12.47456 -12.34855 -12.20625 -11.94855 -11.87526 -11.79378 -11.65143 -11.39283 -11.01059 -10.92216 -10.87231 -10.71789 -10.50956 -9.83964 -9.78622 -9.44792 -8.95641 -8.67103 -7.83876 -7.01329 -6.59796 -4.16898 1.87976 1.92714 2.14785 2.59958 2.90402 3.05926 3.08708 3.13793 3.40722 3.85142 4.12820 4.40154 4.54807 4.65611 4.80749 4.86373 4.98977 5.04276 5.10365 5.15389 5.23110 5.29926 5.43460 5.53371 5.59950 5.74496 5.76319 5.82475 6.03856 6.06693 6.19899 6.21545 6.48248 6.63060 6.72319 6.93436 6.95093 7.09268 7.13437 7.25674 7.59162 7.69126 7.84878 8.17285 8.79615 8.87055 9.48147 10.57715 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.002725 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.589162 B =10272.650811 C =12074.384576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.632 5.632 3 C 0.136 3.864 4 C -0.128 4.128 5 C -0.110 4.110 6 C 0.477 3.523 7 O -0.513 6.513 8 O -0.521 6.521 9 C 0.705 3.295 10 O -0.581 6.581 11 N -0.662 5.662 12 C 0.084 3.916 13 C -0.063 4.063 14 C -0.223 4.223 15 C 0.123 3.877 16 F -0.152 7.152 17 C -0.255 4.255 18 C 0.153 3.847 19 O -0.173 6.173 20 C -0.390 4.390 21 H 0.095 0.905 22 C 0.042 3.958 23 N -0.861 5.861 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.409 0.591 38 H 0.414 0.586 39 H 0.149 0.851 40 H 0.122 0.878 41 H 0.143 0.857 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 15.357 -5.557 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.369 5.369 3 C 0.012 3.988 4 C -0.167 4.167 5 C -0.148 4.148 6 C 0.319 3.681 7 O -0.401 6.401 8 O -0.333 6.333 9 C 0.407 3.593 10 O -0.460 6.460 11 N -0.310 5.310 12 C -0.011 4.011 13 C -0.084 4.084 14 C -0.243 4.243 15 C 0.103 3.897 16 F -0.131 7.131 17 C -0.276 4.276 18 C 0.097 3.903 19 O -0.076 6.076 20 C -0.466 4.466 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.496 5.496 24 Si 0.767 3.233 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.201 1.201 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.268 0.732 38 H 0.251 0.749 39 H 0.166 0.834 40 H 0.140 0.860 41 H 0.160 0.840 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.438 15.304 -5.242 17.066 hybrid contribution -0.709 -0.911 -0.201 1.172 sum 4.729 14.393 -5.443 16.098 Atomic orbital electron populations 1.21802 0.79327 1.03237 1.02423 1.46922 1.06566 1.04681 1.78738 1.21236 0.98090 0.83831 0.95593 1.21875 1.01172 0.95227 0.98473 1.21291 1.04143 0.99252 0.90101 1.23597 0.73641 0.77667 0.93149 1.90758 1.48276 1.53843 1.47181 1.84539 1.70951 1.41431 1.36377 1.15805 0.85217 0.80278 0.77970 1.90839 1.11344 1.85915 1.57901 1.42414 1.10849 1.02943 1.74758 1.16719 0.95178 0.82503 1.06735 1.20806 0.92824 0.98195 0.96538 1.20498 1.02318 0.91262 1.10242 1.17455 0.91053 0.80942 1.00268 1.91406 1.79966 1.47459 1.94280 1.20823 0.96300 0.99604 1.10878 1.18684 0.87100 0.91277 0.93199 1.83896 1.25293 1.36186 1.62247 1.21383 1.06819 0.85906 1.32483 0.88795 1.25266 0.95403 0.99215 0.96350 1.70017 1.14397 1.26845 1.38348 0.85621 0.79003 0.79916 0.78809 1.18970 1.20076 1.20063 0.92013 0.90817 0.90989 0.90351 0.89338 0.90165 0.90886 0.87479 0.87172 0.73214 0.74868 0.83366 0.85984 0.83962 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.16 59.85 0.61 1.42 16 2 N -0.63 -8.32 2.87 -187.35 -0.54 -8.85 16 3 C 0.14 1.36 5.41 -4.04 -0.02 1.34 16 4 C -0.13 -1.24 4.83 -26.73 -0.13 -1.37 16 5 C -0.11 -0.76 5.81 -27.88 -0.16 -0.92 16 6 C 0.48 4.30 8.33 36.01 0.30 4.60 16 7 O -0.51 -6.62 16.74 -18.75 -0.31 -6.93 16 8 O -0.52 -3.45 13.42 -39.26 -0.53 -3.98 16 9 C 0.71 12.33 8.08 -86.91 -0.70 11.62 16 10 O -0.58 -11.42 13.09 5.28 0.07 -11.35 16 11 N -0.66 -12.54 5.12 -14.07 -0.07 -12.61 16 12 C 0.08 1.77 6.45 -83.44 -0.54 1.24 16 13 C -0.06 -1.25 8.71 -39.43 -0.34 -1.59 16 14 C -0.22 -4.24 10.02 -39.48 -0.40 -4.64 16 15 C 0.12 2.50 7.29 -39.43 -0.29 2.21 16 16 F -0.15 -2.97 17.26 2.25 0.04 -2.93 16 17 C -0.26 -5.63 9.14 -39.36 -0.36 -5.99 16 18 C 0.15 3.56 6.66 -38.94 -0.26 3.30 16 19 O -0.17 -4.50 9.17 0.00 0.00 -4.50 16 20 C -0.39 -10.27 9.49 30.88 0.29 -9.98 16 21 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 22 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 23 N -0.86 -23.31 13.67 55.48 0.76 -22.55 16 24 Si 0.94 19.70 29.55 -169.99 -5.02 14.68 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 30 H 0.07 0.84 6.45 -51.93 -0.33 0.50 16 31 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.09 0.98 7.42 -51.93 -0.39 0.59 16 33 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.41 1.16 9.10 45.56 0.41 1.57 16 38 H 0.41 7.58 6.16 -40.82 -0.25 7.33 16 39 H 0.15 2.88 5.79 -52.49 -0.30 2.58 16 40 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 41 H 0.14 3.13 5.63 -52.49 -0.30 2.84 16 42 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -33.49 366.99 -6.11 -39.59 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -3.93 Total: 11.68 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -2.10 Total: 2.24 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.15 Total: -44.02 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.77 Total: -26.77 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.49 -6.11 -39.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593744653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.647 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds