Wall clock time and date at job start Tue Mar 31 2020 23:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00212 * 2 1 4 4 C 1.53002 * 109.47220 * 270.00305 * 3 2 1 5 5 C 1.53000 * 109.47000 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47250 * 180.02562 * 5 4 3 7 7 O 1.20828 * 119.99505 * 359.97438 * 6 5 4 8 8 O 1.34230 * 120.00114 * 180.02562 * 6 5 4 9 9 C 1.34777 * 119.99833 * 180.02562 * 2 1 3 10 10 O 1.21600 * 119.99625 * 180.02562 * 9 2 1 11 11 N 1.34780 * 120.00245 * 0.27238 * 9 2 1 12 12 C 1.40133 * 119.99835 * 174.02307 * 11 9 2 13 13 C 1.38694 * 120.07926 * 335.22433 * 12 11 9 14 14 C 1.38199 * 120.02128 * 179.71920 * 13 12 11 15 15 C 1.38545 * 120.17228 * 0.55492 * 14 13 12 16 16 F 1.35101 * 119.92187 * 179.74393 * 15 14 13 17 17 C 1.38343 * 120.15460 * 359.72385 * 15 14 13 18 18 C 1.38740 * 119.97108 * 359.97438 * 17 15 14 19 19 O 1.35787 * 120.08265 * 180.02562 * 18 17 15 20 20 C 1.34808 * 116.99873 * 5.19326 * 19 18 17 21 21 H 1.08003 * 120.00234 * 354.97870 * 20 19 18 22 22 C 1.38635 * 120.00004 * 174.97970 * 20 19 18 23 23 N 1.31575 * 119.99767 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00124 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47034 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47037 * 120.00017 * 24 22 20 27 27 H 1.48502 * 109.47039 * 240.00045 * 24 22 20 28 28 H 1.08990 * 109.46931 * 269.99499 * 1 2 3 29 29 H 1.08999 * 109.46973 * 29.99840 * 1 2 3 30 30 H 1.09006 * 109.46946 * 149.99964 * 1 2 3 31 31 H 1.09003 * 109.46818 * 30.00115 * 3 2 1 32 32 H 1.09001 * 109.47036 * 150.00083 * 3 2 1 33 33 H 1.08998 * 109.46628 * 299.99498 * 4 3 2 34 34 H 1.09001 * 109.47297 * 59.99938 * 4 3 2 35 35 H 1.09003 * 109.46915 * 299.99735 * 5 4 3 36 36 H 1.08991 * 109.47555 * 59.99450 * 5 4 3 37 37 H 0.96700 * 117.00106 * 179.97438 * 8 6 5 38 38 H 0.96991 * 119.99527 * 354.02766 * 11 9 2 39 39 H 1.07999 * 119.98580 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.91368 * 180.25718 * 14 13 12 41 41 H 1.07997 * 120.01510 * 180.02562 * 17 15 14 42 42 H 0.97007 * 120.00005 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0351 -1.4424 6 6 3.4687 3.4705 -2.8632 7 8 3.0757 2.7908 -3.7816 8 8 4.1294 4.6130 -3.1085 9 6 2.1389 -1.1672 -0.0005 10 8 3.3549 -1.1672 -0.0001 11 7 1.4650 -2.3345 -0.0066 12 6 2.1605 -3.5444 -0.1335 13 6 3.4036 -3.5704 -0.7481 14 6 4.0910 -4.7633 -0.8675 15 6 3.5368 -5.9377 -0.3846 16 9 4.2110 -7.1019 -0.5086 17 6 2.2948 -5.9210 0.2245 18 6 1.6020 -4.7259 0.3532 19 8 0.3831 -4.7068 0.9512 20 6 -0.0505 -5.8621 1.4939 21 1 0.5266 -6.7667 1.3708 22 6 -1.2373 -5.8891 2.2100 23 7 -1.9402 -4.7870 2.3603 24 14 -1.8386 -7.4901 2.9614 25 1 -0.8738 -8.5756 2.6511 26 1 -1.9509 -7.3344 4.4340 27 1 -3.1686 -7.8331 2.3970 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 3.0416 0.9508 -1.9563 34 1 1.5001 1.8408 -1.9563 35 1 2.6294 3.7949 -0.9284 36 1 4.1705 2.9044 -0.9288 37 1 4.2664 4.8505 -4.0358 38 1 0.4987 -2.3369 0.0768 39 1 3.8362 -2.6575 -1.1298 40 1 5.0607 -4.7809 -1.3426 41 1 1.8651 -6.8377 0.6004 42 1 -2.7708 -4.8060 2.8611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593744653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:29 Heat of formation + Delta-G solvation = -181.544692 kcal Electronic energy + Delta-G solvation = -29078.595703 eV Core-core repulsion = 24552.634582 eV Total energy + Delta-G solvation = -4525.961121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.81413 -41.90253 -41.20478 -40.49682 -38.27351 -37.28566 -36.86674 -35.77755 -34.32617 -34.19140 -31.09389 -30.11932 -28.85320 -27.45946 -27.12781 -24.57812 -23.80883 -22.99906 -21.67250 -20.95487 -20.14234 -19.78985 -19.05020 -18.88824 -18.30809 -17.48614 -17.26466 -17.11157 -16.95196 -16.62026 -16.52552 -16.21029 -15.94423 -15.60274 -15.40956 -15.24072 -14.96023 -14.81334 -14.33885 -14.08139 -13.98081 -13.84943 -13.45547 -13.37557 -13.19424 -13.06409 -12.84109 -12.66632 -12.58136 -12.50270 -12.34303 -12.12019 -11.69726 -11.64062 -11.62538 -11.34443 -10.99217 -10.81618 -9.78133 -9.52775 -8.66574 -8.50503 -6.15637 0.21834 0.45949 1.25423 1.37823 1.43389 1.52992 1.54479 1.97399 2.14471 2.23806 2.70895 2.86258 3.03400 3.20537 3.46330 3.87069 3.92524 3.97895 4.12175 4.15253 4.22853 4.35746 4.41811 4.56277 4.58477 4.64475 4.73864 4.79848 4.88633 4.95369 4.97457 5.06308 5.22547 5.25966 5.28625 5.35590 5.53177 5.61040 5.67377 5.84975 5.94601 6.06714 6.79454 6.94508 7.02284 7.40615 7.63442 8.70543 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.002725 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.589162 B =10272.650811 C =12074.384576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.625 5.625 3 C 0.132 3.868 4 C -0.119 4.119 5 C -0.104 4.104 6 C 0.481 3.519 7 O -0.561 6.561 8 O -0.514 6.514 9 C 0.698 3.302 10 O -0.607 6.607 11 N -0.668 5.668 12 C 0.085 3.915 13 C -0.065 4.065 14 C -0.199 4.199 15 C 0.117 3.883 16 F -0.145 7.145 17 C -0.259 4.259 18 C 0.126 3.874 19 O -0.204 6.204 20 C -0.415 4.415 21 H 0.099 0.901 22 C -0.009 4.009 23 N -0.904 5.904 24 Si 1.011 2.989 25 H -0.258 1.258 26 H -0.270 1.270 27 H -0.267 1.267 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.143 0.857 36 H 0.124 0.876 37 H 0.425 0.575 38 H 0.414 0.586 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.137 0.863 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.891 16.641 -5.440 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.360 5.360 3 C 0.010 3.990 4 C -0.158 4.158 5 C -0.142 4.142 6 C 0.325 3.675 7 O -0.453 6.453 8 O -0.327 6.327 9 C 0.401 3.599 10 O -0.488 6.488 11 N -0.315 5.315 12 C -0.011 4.011 13 C -0.086 4.086 14 C -0.219 4.219 15 C 0.096 3.904 16 F -0.124 7.124 17 C -0.280 4.280 18 C 0.073 3.927 19 O -0.110 6.110 20 C -0.490 4.490 21 H 0.116 0.884 22 C -0.208 4.208 23 N -0.541 5.541 24 Si 0.831 3.169 25 H -0.181 1.181 26 H -0.195 1.195 27 H -0.192 1.192 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.161 0.839 36 H 0.142 0.858 37 H 0.287 0.713 38 H 0.252 0.748 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.155 0.845 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.194 16.658 -5.150 18.504 hybrid contribution -0.736 -1.140 -0.368 1.406 sum 5.458 15.518 -5.517 17.351 Atomic orbital electron populations 1.21979 0.77776 1.04380 1.02976 1.47092 1.07664 1.04279 1.77006 1.21531 0.98211 0.83119 0.96123 1.21708 1.00818 0.95735 0.97567 1.21324 1.05068 0.98511 0.89301 1.23968 0.72631 0.77445 0.93434 1.90750 1.50458 1.55346 1.48716 1.84505 1.70032 1.40211 1.37988 1.16024 0.85102 0.80910 0.77900 1.90799 1.12394 1.86413 1.59144 1.42482 1.10883 1.03010 1.75138 1.16978 0.95509 0.82923 1.05685 1.20973 0.92345 0.98866 0.96418 1.20872 1.03026 0.90124 1.07865 1.17432 0.90646 0.81705 1.00574 1.91423 1.79618 1.47109 1.94223 1.20899 0.97041 0.99142 1.10938 1.19014 0.87127 0.92524 0.94080 1.83877 1.26765 1.36333 1.64000 1.21769 1.07562 0.86402 1.33305 0.88416 1.26355 0.95210 1.02782 0.96476 1.70119 1.15150 1.29038 1.39809 0.84620 0.78631 0.75687 0.77922 1.18150 1.19457 1.19179 0.91719 0.87229 0.92332 0.86180 0.90307 0.93990 0.91076 0.83875 0.85756 0.71333 0.74849 0.82659 0.82598 0.84538 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 10.16 127.77 1.30 2.75 16 2 N -0.62 -15.87 2.87 -864.89 -2.49 -18.35 16 3 C 0.13 2.36 5.41 86.38 0.47 2.83 16 4 C -0.12 -2.13 4.83 30.59 0.15 -1.98 16 5 C -0.10 -1.17 5.81 29.85 0.17 -1.00 16 6 C 0.48 7.91 8.33 71.24 0.59 8.50 16 7 O -0.56 -14.36 16.74 21.96 0.37 -13.99 16 8 O -0.51 -5.68 13.42 -51.41 -0.69 -6.37 16 9 C 0.70 24.52 8.08 179.05 1.45 25.96 16 10 O -0.61 -23.84 13.09 -4.03 -0.05 -23.90 16 11 N -0.67 -25.90 5.12 -316.69 -1.62 -27.53 16 12 C 0.09 3.66 6.45 38.22 0.25 3.91 16 13 C -0.07 -2.55 8.71 22.37 0.19 -2.35 16 14 C -0.20 -7.22 10.02 22.33 0.22 -6.99 16 15 C 0.12 4.63 7.29 22.37 0.16 4.79 16 16 F -0.14 -5.42 17.26 44.97 0.78 -4.65 16 17 C -0.26 -11.62 9.14 22.41 0.20 -11.41 16 18 C 0.13 6.04 6.66 22.68 0.15 6.20 16 19 O -0.20 -11.12 9.17 -22.92 -0.21 -11.33 16 20 C -0.41 -22.59 9.49 67.91 0.64 -21.94 16 21 H 0.10 5.03 5.20 -2.91 -0.02 5.02 16 22 C -0.01 -0.46 5.49 84.83 0.47 0.01 16 23 N -0.90 -50.39 13.67 21.61 0.30 -50.10 16 24 Si 1.01 40.75 29.55 68.60 2.03 42.78 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 27 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.11 1.46 8.07 -2.39 -0.02 1.44 16 30 H 0.06 1.37 6.45 -2.38 -0.02 1.36 16 31 H 0.12 1.20 8.07 -2.39 -0.02 1.18 16 32 H 0.08 1.61 7.42 -2.39 -0.02 1.59 16 33 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 34 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 35 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.43 1.64 9.10 -74.06 -0.67 0.97 16 38 H 0.41 15.83 6.16 -92.71 -0.57 15.26 16 39 H 0.16 5.93 5.79 -2.91 -0.02 5.91 16 40 H 0.16 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.14 6.18 5.63 -2.91 -0.02 6.16 16 42 H 0.27 14.04 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -75.37 366.99 4.69 -70.67 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.14 Total: 33.48 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.42 Total: 9.27 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -3.81 Total: -95.97 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -0.59 Total: -55.59 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.78 Total: -4.65 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -75.37 4.69 -70.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593744653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.872 kcal (2) G-P(sol) polarization free energy of solvation -75.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds