Wall clock time and date at job start Tue Mar 31 2020 23:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46907 * 2 1 4 4 C 1.35611 * 124.93247 * 124.75347 * 3 2 1 5 5 C 1.35336 * 107.16817 * 179.72171 * 4 3 2 6 6 N 1.48013 * 127.22686 * 180.21857 * 5 4 3 7 7 O 1.31701 * 120.00534 * 0.17221 * 6 5 4 8 8 O 1.31700 * 119.99969 * 180.16793 * 6 5 4 9 9 C 1.41547 * 105.54252 * 0.36421 * 5 4 3 10 10 C 1.47552 * 126.47160 * 179.89921 * 9 5 4 11 11 O 1.21494 * 120.00210 * 5.38851 * 10 9 5 12 12 N 1.34779 * 119.99923 * 185.11441 * 10 9 5 13 13 C 1.33317 * 120.00122 * 174.70639 * 12 10 9 14 14 H 1.07995 * 120.00596 * 144.51842 * 13 12 10 15 15 C 1.46790 * 120.00056 * 324.51865 * 13 12 10 16 16 N 1.29320 * 119.99769 * 340.62625 * 15 13 12 17 17 Si 1.86798 * 120.00461 * 160.62323 * 15 13 12 18 18 H 1.48497 * 109.46840 * 65.00423 * 17 15 13 19 19 H 1.48500 * 109.47092 * 185.00539 * 17 15 13 20 20 H 1.48497 * 109.46977 * 305.00698 * 17 15 13 21 21 C 1.46504 * 120.00018 * 354.69781 * 12 10 9 22 22 C 1.53006 * 109.46508 * 86.47236 * 21 12 10 23 23 C 1.50700 * 109.46756 * 179.97438 * 22 21 12 24 24 O 1.20827 * 120.00260 * 0.02562 * 23 22 21 25 25 O 1.34229 * 119.99968 * 179.97438 * 23 22 21 26 26 C 1.45193 * 117.00085 * 180.02562 * 25 23 22 27 27 N 1.28477 * 124.93740 * 304.71021 * 3 2 1 28 28 H 1.08999 * 109.47124 * 185.59530 * 1 2 3 29 29 H 1.09010 * 109.47252 * 305.59623 * 1 2 3 30 30 H 1.09004 * 109.47429 * 65.59516 * 1 2 3 31 31 H 1.08994 * 109.46810 * 240.00349 * 2 1 3 32 32 H 1.08998 * 109.47267 * 120.00144 * 2 1 3 33 33 H 1.08001 * 126.41485 * 359.96427 * 4 3 2 34 34 H 0.96994 * 119.99894 * 185.05387 * 16 15 13 35 35 H 1.09000 * 109.47240 * 206.46539 * 21 12 10 36 36 H 1.08999 * 109.47211 * 326.47599 * 21 12 10 37 37 H 1.08997 * 109.47305 * 299.99676 * 22 21 12 38 38 H 1.09000 * 109.47262 * 59.99770 * 22 21 12 39 39 H 1.09004 * 109.47203 * 60.00807 * 26 25 23 40 40 H 1.09009 * 109.47098 * 180.02562 * 26 25 23 41 41 H 1.08996 * 109.47454 * 300.00455 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8746 1.9021 0.9134 5 6 3.0871 3.1940 0.5706 6 7 3.9530 4.1737 1.2643 7 8 4.6229 3.8150 2.3400 8 8 4.0536 5.4042 0.8059 9 6 2.3049 3.4124 -0.5886 10 6 2.1943 4.6730 -1.3475 11 8 2.8869 5.6251 -1.0479 12 7 1.3289 4.7664 -2.3765 13 6 1.1517 5.9342 -2.9946 14 1 0.9729 5.9601 -4.0593 15 6 1.1997 7.1851 -2.2279 16 7 1.0372 7.1639 -0.9452 17 14 1.4956 8.8076 -3.1051 18 1 0.3548 9.0957 -4.0109 19 1 1.6196 9.8966 -2.1031 20 1 2.7478 8.7201 -3.8986 21 6 0.5831 3.5845 -2.8160 22 6 -0.6954 3.4507 -1.9862 23 6 -1.4630 2.2353 -2.4387 24 8 -1.0315 1.5465 -3.3327 25 8 -2.6255 1.9173 -1.8478 26 6 -3.3101 0.7330 -2.3345 27 7 1.6981 2.2748 -0.8658 28 1 -0.3633 -1.0228 0.1002 29 1 -0.3634 0.5982 0.8357 30 1 -0.3634 0.4246 -0.9359 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3091 1.3822 1.7545 34 1 0.9956 7.9955 -0.4478 35 1 0.3232 3.6898 -3.8693 36 1 1.1988 2.6952 -2.6807 37 1 -0.4356 3.3454 -0.9329 38 1 -1.3111 4.3399 -2.1214 39 1 -2.6675 -0.1377 -2.2038 40 1 -4.2338 0.5908 -1.7733 41 1 -3.5433 0.8569 -3.3920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624564967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:35 Heat of formation + Delta-G solvation = 5.658972 kcal Electronic energy + Delta-G solvation = -31621.741346 eV Core-core repulsion = 27123.817946 eV Total energy + Delta-G solvation = -4497.923400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.23027 -41.49356 -40.12376 -39.56308 -37.59191 -36.37088 -35.73737 -35.12787 -34.35355 -32.59584 -32.08753 -31.32784 -28.59966 -27.83100 -27.08609 -25.62153 -24.70447 -22.89909 -22.39155 -21.81168 -21.25728 -19.43877 -19.04121 -18.82432 -18.36099 -17.84517 -17.67313 -17.55873 -17.26526 -17.03885 -16.67544 -16.40651 -15.87830 -15.32854 -15.08792 -14.96234 -14.81688 -14.41425 -13.98016 -13.88936 -13.63485 -13.51834 -13.27037 -13.05636 -12.89252 -12.83406 -12.68098 -12.54600 -12.33403 -12.24295 -12.08913 -11.99839 -11.76771 -11.61252 -11.55911 -11.48262 -10.96303 -10.86949 -10.49043 -10.06821 -9.33969 -8.30986 -5.75767 -1.46433 0.14983 0.36742 0.75952 1.18170 1.30881 1.42687 1.51876 1.54596 1.74121 2.32929 2.76145 2.86791 3.06569 3.22347 3.31921 3.62734 3.87374 3.92891 4.00080 4.02082 4.05829 4.24708 4.30240 4.32733 4.37483 4.37928 4.61306 4.68427 4.73042 4.78840 4.84955 4.91978 5.11321 5.18469 5.33748 5.36395 5.43988 5.83559 6.01067 6.42020 6.73846 6.75566 7.29950 7.55617 8.39214 8.72059 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008623 B = 0.006322 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.229892 B = 4427.611463 C = 7198.609344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.103 3.897 3 N -0.259 5.259 4 C 0.120 3.880 5 C -0.125 4.125 6 N 0.021 4.979 7 O -0.194 6.194 8 O -0.200 6.200 9 C 0.068 3.932 10 C 0.470 3.530 11 O -0.526 6.526 12 N -0.413 5.413 13 C -0.400 4.400 14 H 0.095 0.905 15 C 0.029 3.971 16 N -0.802 5.802 17 Si 0.979 3.021 18 H -0.251 1.251 19 H -0.286 1.286 20 H -0.278 1.278 21 C 0.118 3.882 22 C -0.106 4.106 23 C 0.485 3.515 24 O -0.523 6.523 25 O -0.368 6.368 26 C 0.027 3.973 27 N -0.256 5.256 28 H 0.119 0.881 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.118 0.882 32 H 0.163 0.837 33 H 0.261 0.739 34 H 0.273 0.727 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.129 0.871 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 -21.308 2.865 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 N -0.044 5.044 4 C -0.033 4.033 5 C -0.226 4.226 6 N 0.488 4.512 7 O -0.384 6.384 8 O -0.380 6.380 9 C -0.095 4.095 10 C 0.258 3.742 11 O -0.403 6.403 12 N -0.131 5.131 13 C -0.529 4.529 14 H 0.113 0.887 15 C -0.189 4.189 16 N -0.432 5.432 17 Si 0.803 3.197 18 H -0.175 1.175 19 H -0.212 1.212 20 H -0.204 1.204 21 C -0.006 4.006 22 C -0.145 4.145 23 C 0.328 3.672 24 O -0.413 6.413 25 O -0.284 6.284 26 C -0.066 4.066 27 N -0.091 5.091 28 H 0.137 0.863 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.136 0.864 32 H 0.181 0.819 33 H 0.276 0.724 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.147 0.853 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.550 -21.972 1.856 23.650 hybrid contribution 0.900 1.857 0.421 2.106 sum -7.650 -20.115 2.278 21.641 Atomic orbital electron populations 1.22137 0.92939 1.05319 1.02187 1.22903 0.96846 0.72566 1.08942 1.46743 1.29422 1.12361 1.15857 1.23366 0.92809 0.90197 0.96928 1.20528 1.08313 0.91712 1.02088 1.49593 0.98468 1.03322 0.99825 1.96096 1.45229 1.84942 1.12154 1.96590 1.73088 0.98425 1.69870 1.22777 0.96488 0.95188 0.95005 1.17064 0.85004 0.85694 0.86405 1.90782 1.44605 1.37521 1.67365 1.42266 1.32386 1.08669 1.29817 1.20221 1.57115 0.82875 0.92675 0.88704 1.27564 0.93918 1.02609 0.94774 1.68927 1.34905 1.29934 1.09478 0.85256 0.79285 0.76945 0.78246 1.17541 1.21159 1.20367 1.21637 0.91642 0.89773 0.97555 1.21535 0.96653 0.94125 1.02222 1.23434 0.79210 0.85418 0.79089 1.90612 1.68587 1.52156 1.29923 1.86542 1.34585 1.46942 1.60357 1.23578 0.97583 0.84411 1.01056 1.74207 1.22221 0.96778 1.15854 0.86278 0.92235 0.94113 0.86395 0.81888 0.72352 0.91562 0.91112 0.88511 0.89378 0.88665 0.91127 0.85266 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.01 71.98 0.72 -1.21 16 2 C 0.10 0.97 7.12 86.38 0.62 1.58 16 3 N -0.26 -5.73 3.42 -347.50 -1.19 -6.92 16 4 C 0.12 2.84 11.21 83.44 0.94 3.77 16 5 C -0.12 -4.93 7.31 36.52 0.27 -4.66 16 6 N 0.02 0.98 4.98 -46.12 -0.23 0.75 16 7 O -0.19 -8.12 19.81 3.51 0.07 -8.05 16 8 O -0.20 -11.66 16.15 11.64 0.19 -11.47 16 9 C 0.07 2.99 6.55 42.41 0.28 3.27 16 10 C 0.47 25.88 6.86 86.70 0.59 26.48 16 11 O -0.53 -33.65 10.45 19.96 0.21 -33.44 16 12 N -0.41 -21.36 2.50 -634.24 -1.59 -22.95 16 13 C -0.40 -22.08 9.47 86.71 0.82 -21.26 16 14 H 0.10 4.96 8.00 -2.91 -0.02 4.94 16 15 C 0.03 1.62 4.50 87.30 0.39 2.02 16 16 N -0.80 -48.01 11.23 23.26 0.26 -47.75 16 17 Si 0.98 45.13 29.68 68.60 2.04 47.16 16 18 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 C 0.12 4.88 4.19 86.38 0.36 5.24 16 22 C -0.11 -3.88 5.64 29.85 0.17 -3.71 16 23 C 0.48 14.83 6.65 71.24 0.47 15.30 16 24 O -0.52 -17.16 15.73 21.96 0.35 -16.81 16 25 O -0.37 -9.37 10.56 -51.41 -0.54 -9.91 16 26 C 0.03 0.43 10.55 113.37 1.20 1.63 16 27 N -0.26 -8.51 6.95 -48.23 -0.33 -8.85 16 28 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.04 0.75 6.78 -2.38 -0.02 0.73 16 31 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.16 -0.10 8.04 -2.39 -0.02 -0.12 16 33 H 0.26 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.27 15.69 8.27 -92.71 -0.77 14.92 16 35 H 0.07 2.88 7.96 -2.39 -0.02 2.86 16 36 H 0.10 3.84 5.42 -2.39 -0.01 3.83 16 37 H 0.09 3.36 6.85 -2.39 -0.02 3.35 16 38 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.07 1.00 8.13 -2.38 -0.02 0.98 16 40 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 Total: -1.00 -89.02 359.22 7.14 -81.88 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.09 Total: 7.90 kcal Atomic # 6 Polarization: 21.62 SS G_CDS: 6.82 Total: 28.45 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -3.08 Total: -85.71 kcal Atomic # 8 Polarization: -79.95 SS G_CDS: 0.27 Total: -79.68 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.04 Total: 47.16 kcal Total: -89.02 7.14 -81.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624564967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.542 kcal (2) G-P(sol) polarization free energy of solvation -89.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds