Wall clock time and date at job start Tue Mar 31 2020 23:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47501 * 2 1 4 4 O 1.42901 * 109.47123 * 239.99696 * 2 1 3 5 5 C 1.35665 * 116.99701 * 85.27223 * 4 2 1 6 6 C 1.39080 * 119.88457 * 174.48182 * 5 4 2 7 7 C 1.37121 * 120.11543 * 180.27953 * 6 5 4 8 8 C 1.40028 * 119.88327 * 0.02624 * 7 6 5 9 9 C 1.46864 * 120.11371 * 179.97438 * 8 7 6 10 10 O 1.21293 * 120.00026 * 180.02562 * 9 8 7 11 11 C 1.40039 * 119.77675 * 359.97438 * 8 7 6 12 12 C 1.37122 * 119.88036 * 359.97438 * 11 8 7 13 13 C 1.50701 * 109.47119 * 120.00092 * 2 1 3 14 14 O 1.21271 * 119.99789 * 119.99783 * 13 2 1 15 15 N 1.34779 * 120.00057 * 299.99867 * 13 2 1 16 16 C 1.39264 * 119.99935 * 184.99137 * 15 13 2 17 17 C 1.39678 * 119.57515 * 174.59100 * 16 15 13 18 18 C 1.38646 * 119.49691 * 179.97438 * 17 16 15 19 19 C 1.38346 * 118.67373 * 359.97438 * 18 17 16 20 20 C 1.40580 * 119.12514 * 0.02562 * 19 18 17 21 21 C 1.41338 * 119.78575 * 179.97438 * 20 19 18 22 22 H 1.08001 * 120.00035 * 359.97438 * 21 20 19 23 23 C 1.40034 * 120.00070 * 180.02562 * 21 20 19 24 24 N 1.30741 * 119.99866 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00104 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46960 * 59.99902 * 25 23 21 27 27 H 1.48501 * 109.46908 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47099 * 300.00140 * 25 23 21 29 29 N 1.31907 * 119.57669 * 354.31619 * 16 15 13 30 30 H 1.09002 * 109.47221 * 300.00037 * 1 2 3 31 31 H 1.09005 * 109.47253 * 59.99995 * 1 2 3 32 32 H 1.08996 * 109.47637 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.94496 * 0.28822 * 6 5 4 34 34 H 1.08001 * 120.05629 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.00016 * 0.02562 * 9 8 7 36 36 H 1.08001 * 120.06397 * 180.02562 * 11 8 7 37 37 H 1.07993 * 119.94397 * 179.97438 * 12 11 8 38 38 H 0.97006 * 119.99515 * 4.98789 * 15 13 2 39 39 H 1.07998 * 120.24589 * 359.97438 * 17 16 15 40 40 H 1.08004 * 120.66554 * 180.02562 * 18 17 16 41 41 H 1.07996 * 120.43836 * 179.97438 * 19 18 17 42 42 H 0.96998 * 120.00361 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.1176 0.0626 -2.3007 6 6 2.6823 -0.5007 -3.4401 7 6 2.8024 0.2410 -4.5871 8 6 2.3558 1.5680 -4.6098 9 6 2.4825 2.3672 -5.8354 10 8 2.0954 3.5166 -5.8526 11 6 1.7880 2.1305 -3.4599 12 6 1.6716 1.3798 -2.3183 13 6 2.0323 -0.7104 1.2305 14 8 2.7294 -1.6964 1.1191 15 7 1.7067 -0.2500 2.4546 16 6 2.2542 -0.8425 3.5897 17 6 2.0013 -0.2885 4.8467 18 6 2.5468 -0.8800 5.9758 19 6 3.3301 -2.0097 5.8206 20 6 3.5476 -2.5194 4.5286 21 6 4.3460 -3.6725 4.3539 22 1 4.7871 -4.1589 5.2114 23 6 4.5660 -4.1837 3.0689 24 7 4.0333 -3.5940 2.0307 25 14 5.6206 -5.7081 2.8380 26 1 5.0160 -6.8450 3.5778 27 1 5.6982 -6.0421 1.3932 28 1 6.9866 -5.4487 3.3597 29 7 3.0005 -1.9230 3.4646 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.0267 -1.5241 -3.4215 34 1 3.2406 -0.1975 -5.4714 35 1 2.9203 1.9315 -6.7214 36 1 1.4417 3.1534 -3.4723 37 1 1.2342 1.8127 -1.4308 38 1 1.0910 0.4942 2.5449 39 1 1.3856 0.5941 4.9383 40 1 2.3632 -0.4676 6.9570 41 1 3.7694 -2.4933 6.6806 42 1 4.1853 -3.9482 1.1407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636654349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:55 Heat of formation + Delta-G solvation = -13.267245 kcal Electronic energy + Delta-G solvation = -28302.796569 eV Core-core repulsion = 24214.901730 eV Total energy + Delta-G solvation = -4087.894839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.77068 -39.60642 -38.94250 -37.70792 -36.86759 -34.22428 -33.17197 -32.26471 -31.32003 -30.41191 -30.30007 -28.91488 -25.68986 -25.19809 -24.19293 -23.22950 -21.86921 -21.29739 -20.96607 -19.43419 -18.55452 -18.00495 -17.08794 -16.55249 -16.17204 -15.91587 -15.69995 -15.15849 -14.70039 -14.60011 -14.50503 -14.45744 -14.11578 -13.91540 -13.66318 -13.64040 -13.23755 -12.88788 -12.85204 -12.58991 -12.44013 -12.04432 -11.97129 -11.79409 -11.20895 -11.10509 -10.99993 -10.93865 -10.70804 -10.51093 -10.04101 -9.99241 -9.75508 -9.38425 -9.08366 -9.05524 -8.42931 -8.02854 -7.28897 -7.05673 -6.18420 -4.44402 0.47269 1.11625 2.22939 2.66761 2.73617 3.01863 3.15451 3.16861 3.23439 3.53692 3.59161 3.82104 4.03940 4.04275 4.47592 4.50668 4.68519 4.82487 4.90173 4.95227 4.98156 5.02927 5.18543 5.28748 5.44086 5.49365 5.74335 5.91059 5.96481 5.98453 6.05083 6.06578 6.09981 6.39614 6.42362 6.57638 6.75292 6.79636 7.17073 7.19218 7.19509 7.48498 7.54988 7.75645 7.95554 8.13271 8.37115 8.67604 8.98981 9.10012 10.17386 10.44238 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013763 B = 0.002840 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.965719 B = 9857.319911 C =11494.666899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.063 3.937 3 H 0.094 0.906 4 O -0.272 6.272 5 C 0.178 3.822 6 C -0.167 4.167 7 C -0.026 4.026 8 C -0.246 4.246 9 C 0.387 3.613 10 O -0.473 6.473 11 C -0.015 4.015 12 C -0.232 4.232 13 C 0.473 3.527 14 O -0.381 6.381 15 N -0.661 5.661 16 C 0.372 3.628 17 C -0.356 4.356 18 C -0.036 4.036 19 C -0.303 4.303 20 C 0.270 3.730 21 C -0.423 4.423 22 H 0.083 0.917 23 C 0.057 3.943 24 N -0.656 5.656 25 Si 0.898 3.102 26 H -0.267 1.267 27 H -0.278 1.278 28 H -0.267 1.267 29 N -0.475 5.475 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.399 0.601 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.451 8.142 -12.414 15.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.003 3.997 3 H 0.112 0.888 4 O -0.183 6.183 5 C 0.131 3.869 6 C -0.186 4.186 7 C -0.044 4.044 8 C -0.248 4.248 9 C 0.248 3.752 10 O -0.348 6.348 11 C -0.033 4.033 12 C -0.251 4.251 13 C 0.252 3.748 14 O -0.242 6.242 15 N -0.310 5.310 16 C 0.133 3.867 17 C -0.382 4.382 18 C -0.060 4.060 19 C -0.327 4.327 20 C 0.145 3.855 21 C -0.453 4.453 22 H 0.101 0.899 23 C -0.172 4.172 24 N -0.275 5.275 25 Si 0.722 3.278 26 H -0.192 1.192 27 H -0.203 1.203 28 H -0.192 1.192 29 N -0.194 5.194 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.118 0.882 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.233 0.767 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.908 7.382 -13.628 16.257 hybrid contribution -0.153 0.255 0.984 1.028 sum -5.061 7.637 -12.643 15.614 Atomic orbital electron populations 1.22332 0.93024 1.04548 1.03369 1.22452 0.95444 0.97051 0.84765 0.88821 1.86230 1.79369 1.36867 1.15808 1.19551 0.90700 0.89815 0.86860 1.20369 1.04816 1.02175 0.91209 1.21054 0.93925 0.92136 0.97279 1.20772 1.09817 0.96592 0.97581 1.23882 0.74320 0.86679 0.90355 1.90520 1.38741 1.19559 1.85936 1.21061 0.92075 0.99329 0.90869 1.21228 1.08824 0.94412 1.00621 1.20050 0.84300 0.87060 0.83386 1.91200 1.29300 1.19589 1.84098 1.43214 1.47544 1.35899 1.04305 1.18540 0.92842 0.91819 0.83465 1.20453 1.17886 1.07635 0.92214 1.20562 0.94866 0.94537 0.96031 1.21630 1.10743 1.02275 0.98013 1.18370 0.89608 0.91646 0.85859 1.19571 1.24790 1.07499 0.93434 0.89919 1.26184 0.96476 0.98242 0.96341 1.70271 1.26832 1.31533 0.98821 0.86554 0.80996 0.82279 0.77982 1.19155 1.20328 1.19162 1.68666 1.12476 1.07108 1.31112 0.90217 0.91138 0.90451 0.84171 0.84387 0.88237 0.84863 0.84575 0.76732 0.89033 0.88536 0.88486 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.07 37.15 0.34 -1.53 16 2 C 0.06 0.88 2.65 -27.89 -0.07 0.80 16 3 H 0.09 1.07 6.27 -51.93 -0.33 0.75 16 4 O -0.27 -4.24 9.32 -38.61 -0.36 -4.60 16 5 C 0.18 2.28 6.62 -38.96 -0.26 2.02 16 6 C -0.17 -1.86 9.95 -39.67 -0.39 -2.26 16 7 C -0.03 -0.22 9.77 -39.32 -0.38 -0.60 16 8 C -0.25 -2.33 5.87 -105.06 -0.62 -2.95 16 9 C 0.39 3.30 11.44 34.22 0.39 3.69 16 10 O -0.47 -5.83 17.16 5.55 0.10 -5.73 16 11 C -0.02 -0.16 9.57 -39.31 -0.38 -0.53 16 12 C -0.23 -2.51 8.21 -39.67 -0.33 -2.84 16 13 C 0.47 9.18 7.19 -10.98 -0.08 9.10 16 14 O -0.38 -9.51 12.27 -14.35 -0.18 -9.68 16 15 N -0.66 -12.27 5.31 -11.40 -0.06 -12.33 16 16 C 0.37 8.79 7.43 -154.98 -1.15 7.64 16 17 C -0.36 -7.73 9.95 -38.89 -0.39 -8.12 16 18 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 19 C -0.30 -7.51 9.83 -38.66 -0.38 -7.89 16 20 C 0.27 7.49 6.55 -85.00 -0.56 6.93 16 21 C -0.42 -11.49 9.14 -37.73 -0.34 -11.83 16 22 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 23 C 0.06 1.49 5.50 -17.34 -0.10 1.39 16 24 N -0.66 -18.05 9.00 55.55 0.50 -17.55 16 25 Si 0.90 19.11 29.56 -169.99 -5.02 14.09 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 28 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 29 N -0.47 -13.10 5.74 -10.25 -0.06 -13.15 16 30 H 0.08 0.68 7.46 -51.93 -0.39 0.29 16 31 H 0.07 0.62 6.95 -51.93 -0.36 0.26 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.10 0.45 8.06 -52.49 -0.42 0.02 16 36 H 0.13 1.28 7.64 -52.49 -0.40 0.88 16 37 H 0.14 1.24 5.41 -52.49 -0.28 0.95 16 38 H 0.40 5.45 7.98 -40.82 -0.33 5.12 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 42 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -35.10 362.88 -9.30 -44.40 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.59 Total: 7.27 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -5.09 Total: -8.17 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.38 Total: -43.04 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.44 Total: -20.02 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.10 -9.30 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636654349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.130 kcal (2) G-P(sol) polarization free energy of solvation -35.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds