Wall clock time and date at job start Tue Mar 31 2020 23:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47501 * 2 1 4 4 O 1.42901 * 109.47123 * 239.99696 * 2 1 3 5 5 C 1.35665 * 116.99701 * 85.27223 * 4 2 1 6 6 C 1.39080 * 119.88457 * 174.48182 * 5 4 2 7 7 C 1.37121 * 120.11543 * 180.27953 * 6 5 4 8 8 C 1.40028 * 119.88327 * 0.02624 * 7 6 5 9 9 C 1.46864 * 120.11371 * 179.97438 * 8 7 6 10 10 O 1.21293 * 120.00026 * 180.02562 * 9 8 7 11 11 C 1.40039 * 119.77675 * 359.97438 * 8 7 6 12 12 C 1.37122 * 119.88036 * 359.97438 * 11 8 7 13 13 C 1.50701 * 109.47119 * 120.00092 * 2 1 3 14 14 O 1.21271 * 119.99789 * 119.99783 * 13 2 1 15 15 N 1.34779 * 120.00057 * 299.99867 * 13 2 1 16 16 C 1.39264 * 119.99935 * 184.99137 * 15 13 2 17 17 C 1.39678 * 119.57515 * 174.59100 * 16 15 13 18 18 C 1.38646 * 119.49691 * 179.97438 * 17 16 15 19 19 C 1.38346 * 118.67373 * 359.97438 * 18 17 16 20 20 C 1.40580 * 119.12514 * 0.02562 * 19 18 17 21 21 C 1.41338 * 119.78575 * 179.97438 * 20 19 18 22 22 H 1.08001 * 120.00035 * 359.97438 * 21 20 19 23 23 C 1.40034 * 120.00070 * 180.02562 * 21 20 19 24 24 N 1.30741 * 119.99866 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00104 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46960 * 59.99902 * 25 23 21 27 27 H 1.48501 * 109.46908 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47099 * 300.00140 * 25 23 21 29 29 N 1.31907 * 119.57669 * 354.31619 * 16 15 13 30 30 H 1.09002 * 109.47221 * 300.00037 * 1 2 3 31 31 H 1.09005 * 109.47253 * 59.99995 * 1 2 3 32 32 H 1.08996 * 109.47637 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.94496 * 0.28822 * 6 5 4 34 34 H 1.08001 * 120.05629 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.00016 * 0.02562 * 9 8 7 36 36 H 1.08001 * 120.06397 * 180.02562 * 11 8 7 37 37 H 1.07993 * 119.94397 * 179.97438 * 12 11 8 38 38 H 0.97006 * 119.99515 * 4.98789 * 15 13 2 39 39 H 1.07998 * 120.24589 * 359.97438 * 17 16 15 40 40 H 1.08004 * 120.66554 * 180.02562 * 18 17 16 41 41 H 1.07996 * 120.43836 * 179.97438 * 19 18 17 42 42 H 0.96998 * 120.00361 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.1176 0.0626 -2.3007 6 6 2.6823 -0.5007 -3.4401 7 6 2.8024 0.2410 -4.5871 8 6 2.3558 1.5680 -4.6098 9 6 2.4825 2.3672 -5.8354 10 8 2.0954 3.5166 -5.8526 11 6 1.7880 2.1305 -3.4599 12 6 1.6716 1.3798 -2.3183 13 6 2.0323 -0.7104 1.2305 14 8 2.7294 -1.6964 1.1191 15 7 1.7067 -0.2500 2.4546 16 6 2.2542 -0.8425 3.5897 17 6 2.0013 -0.2885 4.8467 18 6 2.5468 -0.8800 5.9758 19 6 3.3301 -2.0097 5.8206 20 6 3.5476 -2.5194 4.5286 21 6 4.3460 -3.6725 4.3539 22 1 4.7871 -4.1589 5.2114 23 6 4.5660 -4.1837 3.0689 24 7 4.0333 -3.5940 2.0307 25 14 5.6206 -5.7081 2.8380 26 1 5.0160 -6.8450 3.5778 27 1 5.6982 -6.0421 1.3932 28 1 6.9866 -5.4487 3.3597 29 7 3.0005 -1.9230 3.4646 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.0267 -1.5241 -3.4215 34 1 3.2406 -0.1975 -5.4714 35 1 2.9203 1.9315 -6.7214 36 1 1.4417 3.1534 -3.4723 37 1 1.2342 1.8127 -1.4308 38 1 1.0910 0.4942 2.5449 39 1 1.3856 0.5941 4.9383 40 1 2.3632 -0.4676 6.9570 41 1 3.7694 -2.4933 6.6806 42 1 4.1853 -3.9482 1.1407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001636654349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:54 Heat of formation + Delta-G solvation = -34.661964 kcal Electronic energy + Delta-G solvation = -28303.724314 eV Core-core repulsion = 24214.901730 eV Total energy + Delta-G solvation = -4088.822584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80204 -40.87290 -40.06287 -39.18777 -37.95778 -35.97814 -34.94818 -33.36065 -32.24774 -32.10843 -31.28705 -30.59979 -27.52480 -26.19639 -25.17725 -24.28536 -23.43467 -22.88112 -21.85701 -20.92400 -19.69436 -19.48627 -18.37667 -17.79360 -17.56816 -16.85379 -16.74739 -16.48543 -16.27975 -16.01736 -15.73858 -15.53028 -15.42830 -15.16686 -15.01722 -14.65490 -14.44959 -14.23788 -14.05363 -13.74080 -13.65814 -13.37782 -13.22888 -12.88467 -12.80235 -12.74366 -12.58445 -12.32858 -12.09434 -11.83047 -11.79067 -11.52623 -10.88983 -10.75567 -10.64711 -10.14119 -9.91722 -9.33088 -9.10458 -8.86595 -8.06625 -6.43120 -0.29953 0.34401 0.88783 1.23720 1.38772 1.48042 1.50722 1.52109 1.62298 1.99787 2.25552 2.57026 2.80789 2.97602 3.43618 3.48963 3.69168 3.75794 3.84325 3.90518 4.05497 4.20390 4.30528 4.36135 4.47656 4.56650 4.61633 4.67634 4.74179 4.86027 4.95524 4.97842 5.03312 5.08896 5.18168 5.24581 5.25870 5.33752 5.64047 5.67362 5.81141 5.91844 6.11452 6.26322 6.36221 6.54864 6.68342 6.81233 7.05652 7.57687 8.31943 8.54858 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013763 B = 0.002840 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.965719 B = 9857.319911 C =11494.666899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.076 3.924 3 H 0.121 0.879 4 O -0.307 6.307 5 C 0.150 3.850 6 C -0.186 4.186 7 C -0.010 4.010 8 C -0.250 4.250 9 C 0.397 3.603 10 O -0.514 6.514 11 C -0.027 4.027 12 C -0.231 4.231 13 C 0.464 3.536 14 O -0.444 6.444 15 N -0.646 5.646 16 C 0.348 3.652 17 C -0.341 4.341 18 C -0.035 4.035 19 C -0.328 4.328 20 C 0.236 3.764 21 C -0.465 4.465 22 H 0.086 0.914 23 C 0.011 3.989 24 N -0.691 5.691 25 Si 0.975 3.025 26 H -0.260 1.260 27 H -0.275 1.275 28 H -0.260 1.260 29 N -0.510 5.510 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.135 0.865 34 H 0.179 0.821 35 H 0.153 0.847 36 H 0.138 0.862 37 H 0.152 0.848 38 H 0.423 0.577 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.104 0.896 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.230 9.920 -13.522 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 H 0.139 0.861 4 O -0.220 6.220 5 C 0.104 3.896 6 C -0.204 4.204 7 C -0.028 4.028 8 C -0.252 4.252 9 C 0.260 3.740 10 O -0.390 6.390 11 C -0.045 4.045 12 C -0.249 4.249 13 C 0.246 3.754 14 O -0.308 6.308 15 N -0.297 5.297 16 C 0.110 3.890 17 C -0.367 4.367 18 C -0.059 4.059 19 C -0.351 4.351 20 C 0.110 3.890 21 C -0.496 4.496 22 H 0.104 0.896 23 C -0.215 4.215 24 N -0.311 5.311 25 Si 0.796 3.204 26 H -0.184 1.184 27 H -0.199 1.199 28 H -0.185 1.185 29 N -0.230 5.230 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.196 0.804 35 H 0.169 0.831 36 H 0.156 0.844 37 H 0.169 0.831 38 H 0.262 0.738 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.122 0.878 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.733 9.218 -14.731 18.299 hybrid contribution -0.002 -0.113 1.332 1.337 sum -5.736 9.105 -13.399 17.185 Atomic orbital electron populations 1.22332 0.90321 1.03986 1.05794 1.22356 0.97152 0.96805 0.82054 0.86122 1.86181 1.80470 1.38433 1.16876 1.19839 0.92579 0.90749 0.86444 1.20612 1.05340 1.02524 0.91942 1.21410 0.92379 0.91424 0.97546 1.21135 1.08967 0.97074 0.97990 1.24526 0.72818 0.85646 0.91031 1.90524 1.40652 1.21402 1.86461 1.21272 0.92343 0.99639 0.91232 1.21333 1.08552 0.93556 1.01472 1.21094 0.82988 0.86478 0.84859 1.91190 1.32007 1.22464 1.85169 1.43154 1.47360 1.36032 1.03187 1.19096 0.92592 0.91460 0.85880 1.20971 1.16497 1.08032 0.91160 1.21054 0.93276 0.93319 0.98219 1.21812 1.12234 1.03831 0.97256 1.18867 0.90334 0.92480 0.87303 1.19885 1.26641 1.08793 0.94305 0.89586 1.27045 0.97524 1.01289 0.95637 1.70492 1.28573 1.33185 0.98804 0.85389 0.79091 0.78072 0.77896 1.18397 1.19932 1.18455 1.68637 1.13705 1.08847 1.31794 0.87592 0.88815 0.92497 0.84687 0.80355 0.83085 0.84374 0.83073 0.73844 0.84628 0.84405 0.87767 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 9.07 71.98 0.65 -2.64 16 2 C 0.08 2.08 2.65 29.85 0.08 2.15 16 3 H 0.12 2.58 6.27 -2.38 -0.01 2.56 16 4 O -0.31 -9.86 9.32 -70.77 -0.66 -10.52 16 5 C 0.15 3.81 6.62 22.67 0.15 3.96 16 6 C -0.19 -4.05 9.95 22.21 0.22 -3.83 16 7 C -0.01 -0.14 9.77 22.44 0.22 0.08 16 8 C -0.25 -4.13 5.87 -20.15 -0.12 -4.24 16 9 C 0.40 5.50 11.44 70.08 0.80 6.30 16 10 O -0.51 -11.63 17.16 -3.07 -0.05 -11.68 16 11 C -0.03 -0.51 9.57 22.44 0.21 -0.29 16 12 C -0.23 -4.68 8.21 22.21 0.18 -4.50 16 13 C 0.46 18.40 7.19 87.66 0.63 19.03 16 14 O -0.44 -23.41 12.27 16.04 0.20 -23.22 16 15 N -0.65 -23.63 5.31 -308.36 -1.64 -25.26 16 16 C 0.35 16.48 7.43 133.25 0.99 17.47 16 17 C -0.34 -14.06 9.95 22.72 0.23 -13.84 16 18 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 19 C -0.33 -16.48 9.83 22.87 0.22 -16.26 16 20 C 0.24 13.62 6.55 40.20 0.26 13.88 16 21 C -0.47 -26.64 9.14 23.47 0.21 -26.43 16 22 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 23 C 0.01 0.58 5.50 85.29 0.47 1.04 16 24 N -0.69 -40.40 9.00 21.84 0.20 -40.20 16 25 Si 0.97 41.09 29.56 68.60 2.03 43.12 16 26 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 28 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 29 N -0.51 -29.25 5.74 -186.35 -1.07 -30.32 16 30 H 0.11 1.49 7.46 -2.39 -0.02 1.47 16 31 H 0.09 1.44 6.95 -2.38 -0.02 1.42 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 34 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 35 H 0.15 0.60 8.06 -2.91 -0.02 0.57 16 36 H 0.14 2.45 7.64 -2.91 -0.02 2.43 16 37 H 0.15 2.42 5.41 -2.91 -0.02 2.41 16 38 H 0.42 10.56 7.98 -92.70 -0.74 9.82 16 39 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 40 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 42 H 0.27 15.02 8.29 -92.71 -0.77 14.25 16 Total: -1.00 -83.90 362.88 4.99 -78.91 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.34 Total: 28.52 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.65 Total: -9.34 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -2.51 Total: -95.78 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -0.52 Total: -45.42 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -83.90 4.99 -78.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636654349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.245 kcal (2) G-P(sol) polarization free energy of solvation -83.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds