Wall clock time and date at job start Tue Mar 31 2020 23:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99799 * 2 1 4 4 C 1.50704 * 109.47101 * 180.02562 * 3 2 1 5 5 O 1.21276 * 119.99902 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99946 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99914 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47037 * 180.02562 * 7 6 4 9 9 C 1.50704 * 109.47070 * 180.02562 * 8 7 6 10 10 O 1.21299 * 119.99824 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99988 * 180.02562 * 9 8 7 12 12 C 1.40088 * 119.99663 * 183.93373 * 11 9 8 13 13 C 1.38708 * 120.07913 * 334.48683 * 12 11 9 14 14 C 1.38187 * 120.02308 * 179.97438 * 13 12 11 15 15 C 1.38549 * 120.17664 * 0.02993 * 14 13 12 16 16 F 1.35096 * 119.92684 * 179.97438 * 15 14 13 17 17 C 1.38345 * 120.15571 * 359.97438 * 15 14 13 18 18 C 1.38746 * 119.97599 * 359.97438 * 17 15 14 19 19 O 1.35767 * 120.08914 * 180.29926 * 18 17 15 20 20 C 1.34808 * 117.00253 * 354.38031 * 19 18 17 21 21 H 1.08004 * 119.99635 * 354.62719 * 20 19 18 22 22 C 1.38637 * 120.00182 * 174.63177 * 20 19 18 23 23 N 1.31570 * 119.99524 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 119.99855 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47306 * 90.00588 * 24 22 20 26 26 H 1.48500 * 109.47002 * 210.00125 * 24 22 20 27 27 H 1.48497 * 109.47495 * 329.99796 * 24 22 20 28 28 H 1.08995 * 109.47224 * 299.99213 * 1 2 3 29 29 H 1.08995 * 109.47380 * 59.99939 * 1 2 3 30 30 H 1.09007 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47310 * 60.00341 * 3 2 1 32 32 H 1.08999 * 109.47398 * 300.00422 * 3 2 1 33 33 H 0.97004 * 119.99936 * 0.02562 * 6 4 3 34 34 H 1.08999 * 109.47195 * 60.00349 * 7 6 4 35 35 H 1.08999 * 109.47319 * 300.00426 * 7 6 4 36 36 H 1.09006 * 109.46645 * 60.00444 * 8 7 6 37 37 H 1.08995 * 109.47330 * 299.99875 * 8 7 6 38 38 H 0.96997 * 120.00171 * 3.92917 * 11 9 8 39 39 H 1.08002 * 119.98683 * 359.97438 * 13 12 11 40 40 H 1.07995 * 119.91015 * 180.02562 * 14 13 12 41 41 H 1.08003 * 120.01596 * 180.02562 * 17 15 14 42 42 H 0.97003 * 119.99525 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2764 2.2969 -0.0002 7 6 5.7368 2.1812 -0.0003 8 6 6.3591 3.5790 0.0009 9 6 7.8614 3.4600 0.0002 10 8 8.3831 2.3649 -0.0016 11 7 8.6253 4.5704 0.0015 12 6 10.0195 4.4615 -0.0823 13 6 10.6541 3.3075 0.3531 14 6 12.0293 3.2011 0.2694 15 6 12.7783 4.2453 -0.2485 16 9 14.1226 4.1361 -0.3276 17 6 12.1530 5.3996 -0.6848 18 6 10.7725 5.5129 -0.6047 19 8 10.1559 6.6422 -1.0379 20 6 10.9480 7.6615 -1.4264 21 1 12.0187 7.5904 -1.3036 22 6 10.3883 8.8009 -1.9836 23 7 11.1615 9.7958 -2.3624 24 14 8.5366 8.9236 -2.1966 25 1 7.9371 9.5259 -0.9788 26 1 8.2291 9.7759 -3.3731 27 1 7.9716 7.5666 -2.4073 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8592 3.1726 0.0009 34 1 6.0585 1.6407 -0.8905 35 1 6.0585 1.6399 0.8894 36 1 6.0374 4.1191 0.8914 37 1 6.0375 4.1206 -0.8886 38 1 8.2098 5.4449 0.0605 39 1 10.0731 2.4919 0.7577 40 1 12.5215 2.3016 0.6085 41 1 12.7391 6.2121 -1.0885 42 1 10.7699 10.5929 -2.7526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645607099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:59 Heat of formation + Delta-G solvation = -153.846634 kcal Electronic energy + Delta-G solvation = -28244.779805 eV Core-core repulsion = 23720.019761 eV Total energy + Delta-G solvation = -4524.760043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.32486 -40.53058 -39.99389 -38.90329 -37.84416 -36.60019 -35.37651 -34.36440 -32.57608 -31.73802 -29.69084 -29.31182 -28.31060 -26.36673 -25.50907 -24.10700 -22.39924 -21.60004 -21.11792 -20.16819 -18.42814 -18.13796 -17.69026 -17.35542 -16.91090 -16.80171 -16.76135 -16.07875 -15.64922 -15.44935 -15.21092 -15.04588 -14.81389 -14.65235 -14.20404 -14.09252 -13.99718 -13.61203 -13.50643 -13.35972 -13.22953 -12.71167 -12.53333 -12.38226 -12.20348 -11.96257 -11.91728 -11.76392 -11.50104 -11.03599 -10.87833 -10.54957 -10.27073 -10.14410 -9.98692 -9.82776 -9.47002 -9.39830 -9.07342 -8.04279 -7.30700 -6.60813 -4.28525 1.62648 1.95861 2.30735 2.36750 2.66867 3.03555 3.06440 3.15714 3.22801 3.69275 4.01747 4.18771 4.27811 4.43134 4.49171 4.61946 4.67019 4.75834 4.78446 4.85888 4.88205 4.90707 4.93442 5.15381 5.22286 5.47869 5.61087 5.64883 5.74508 5.84810 5.99773 6.03932 6.34663 6.50325 6.64939 6.75480 6.82860 6.88106 7.11894 7.39190 7.54508 7.63596 7.80462 7.90263 8.22175 8.71687 9.25636 10.46357 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.002458 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.175901 B =11386.750658 C =13750.637157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.512 3.488 5 O -0.514 6.514 6 N -0.732 5.732 7 C 0.137 3.863 8 C -0.154 4.154 9 C 0.513 3.487 10 O -0.527 6.527 11 N -0.648 5.648 12 C 0.057 3.943 13 C -0.064 4.064 14 C -0.220 4.220 15 C 0.129 3.871 16 F -0.148 7.148 17 C -0.245 4.245 18 C 0.163 3.837 19 O -0.210 6.210 20 C -0.392 4.392 21 H 0.109 0.891 22 C 0.065 3.935 23 N -0.870 5.870 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.260 1.260 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.401 0.599 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.413 0.587 39 H 0.158 0.842 40 H 0.125 0.875 41 H 0.150 0.850 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.595 -9.178 5.563 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.296 3.704 5 O -0.387 6.387 6 N -0.386 5.386 7 C 0.013 3.987 8 C -0.194 4.194 9 C 0.300 3.700 10 O -0.404 6.404 11 N -0.291 5.291 12 C -0.037 4.037 13 C -0.084 4.084 14 C -0.240 4.240 15 C 0.109 3.891 16 F -0.127 7.127 17 C -0.265 4.265 18 C 0.109 3.891 19 O -0.114 6.114 20 C -0.467 4.467 21 H 0.126 0.874 22 C -0.139 4.139 23 N -0.507 5.507 24 Si 0.731 3.269 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.184 1.184 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.235 0.765 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.249 0.751 39 H 0.175 0.825 40 H 0.143 0.857 41 H 0.167 0.833 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.955 -10.641 5.406 21.560 hybrid contribution -0.871 1.662 -0.290 1.899 sum -18.827 -8.979 5.116 21.476 Atomic orbital electron populations 1.22854 0.80232 1.03450 1.00160 1.88031 1.19887 1.25112 1.95425 1.22235 0.91548 0.87150 1.02722 1.20231 0.88660 0.84568 0.76917 1.90774 1.74538 1.26423 1.46998 1.45853 1.07252 1.08793 1.76734 1.21050 0.77624 0.95520 1.04501 1.21799 0.92744 0.99260 1.05588 1.20291 0.88854 0.84198 0.76649 1.90648 1.74181 1.26588 1.48996 1.43122 1.04953 1.09854 1.71181 1.16956 0.81745 0.96092 1.08884 1.21065 0.93311 0.96824 0.97161 1.20620 0.93933 0.99447 1.10046 1.17511 0.76388 0.95135 1.00093 1.91429 1.30474 1.96498 1.94313 1.20981 0.94604 0.99769 1.11196 1.18457 0.90179 0.86737 0.93771 1.83497 1.36035 1.19947 1.71970 1.20757 0.92294 0.92052 1.41567 0.87395 1.24490 1.00302 0.94160 0.94985 1.69645 1.36071 1.06137 1.38836 0.86188 0.83406 0.79054 0.78262 1.19682 1.20610 1.18393 0.93743 0.93732 0.89003 0.90126 0.90110 0.76524 0.90130 0.90159 0.87868 0.87765 0.75092 0.82519 0.85658 0.83302 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.37 -3.63 10.24 -55.14 -0.56 -4.19 16 3 C 0.04 0.30 6.42 36.01 0.23 0.53 16 4 C 0.51 5.37 7.91 -10.98 -0.09 5.28 16 5 O -0.51 -8.20 16.50 -14.35 -0.24 -8.44 16 6 N -0.73 -5.63 5.56 -60.30 -0.33 -5.96 16 7 C 0.14 1.38 4.96 -4.04 -0.02 1.36 16 8 C -0.15 -1.31 5.82 -27.88 -0.16 -1.47 16 9 C 0.51 6.96 7.72 -10.98 -0.08 6.88 16 10 O -0.53 -8.77 12.91 5.54 0.07 -8.70 16 11 N -0.65 -9.80 5.28 -9.71 -0.05 -9.85 16 12 C 0.06 1.06 6.47 -83.45 -0.54 0.52 16 13 C -0.06 -1.13 8.79 -39.43 -0.35 -1.48 16 14 C -0.22 -3.88 10.02 -39.49 -0.40 -4.28 16 15 C 0.13 2.48 7.29 -39.43 -0.29 2.20 16 16 F -0.15 -2.81 17.26 2.25 0.04 -2.77 16 17 C -0.24 -5.16 9.11 -39.35 -0.36 -5.52 16 18 C 0.16 3.45 6.66 -38.93 -0.26 3.19 16 19 O -0.21 -4.84 8.01 0.06 0.00 -4.84 16 20 C -0.39 -10.09 9.90 30.88 0.31 -9.79 16 21 H 0.11 2.92 5.52 -52.48 -0.29 2.63 16 22 C 0.07 1.68 5.49 -17.52 -0.10 1.58 16 23 N -0.87 -23.55 13.96 55.48 0.77 -22.77 16 24 Si 0.91 19.13 28.62 -169.99 -4.86 14.26 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.40 1.54 8.47 -40.82 -0.35 1.20 16 34 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.41 5.57 8.36 -40.82 -0.34 5.23 16 39 H 0.16 2.70 5.52 -52.49 -0.29 2.41 16 40 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.15 3.30 5.71 -52.48 -0.30 3.00 16 42 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -33.83 370.37 -5.50 -39.32 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.92 Total: 8.08 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -0.99 Total: 0.28 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.39 Total: -38.59 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.73 Total: -26.17 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.86 Total: 14.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.83 -5.50 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645607099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.522 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds