Wall clock time and date at job start Tue Mar 31 2020 23:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99799 * 2 1 4 4 C 1.50704 * 109.47101 * 180.02562 * 3 2 1 5 5 O 1.21276 * 119.99902 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99946 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99914 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47037 * 180.02562 * 7 6 4 9 9 C 1.50704 * 109.47070 * 180.02562 * 8 7 6 10 10 O 1.21299 * 119.99824 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99988 * 180.02562 * 9 8 7 12 12 C 1.40088 * 119.99663 * 183.93373 * 11 9 8 13 13 C 1.38708 * 120.07913 * 334.48683 * 12 11 9 14 14 C 1.38187 * 120.02308 * 179.97438 * 13 12 11 15 15 C 1.38549 * 120.17664 * 0.02993 * 14 13 12 16 16 F 1.35096 * 119.92684 * 179.97438 * 15 14 13 17 17 C 1.38345 * 120.15571 * 359.97438 * 15 14 13 18 18 C 1.38746 * 119.97599 * 359.97438 * 17 15 14 19 19 O 1.35767 * 120.08914 * 180.29926 * 18 17 15 20 20 C 1.34808 * 117.00253 * 354.38031 * 19 18 17 21 21 H 1.08004 * 119.99635 * 354.62719 * 20 19 18 22 22 C 1.38637 * 120.00182 * 174.63177 * 20 19 18 23 23 N 1.31570 * 119.99524 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 119.99855 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47306 * 90.00588 * 24 22 20 26 26 H 1.48500 * 109.47002 * 210.00125 * 24 22 20 27 27 H 1.48497 * 109.47495 * 329.99796 * 24 22 20 28 28 H 1.08995 * 109.47224 * 299.99213 * 1 2 3 29 29 H 1.08995 * 109.47380 * 59.99939 * 1 2 3 30 30 H 1.09007 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47310 * 60.00341 * 3 2 1 32 32 H 1.08999 * 109.47398 * 300.00422 * 3 2 1 33 33 H 0.97004 * 119.99936 * 0.02562 * 6 4 3 34 34 H 1.08999 * 109.47195 * 60.00349 * 7 6 4 35 35 H 1.08999 * 109.47319 * 300.00426 * 7 6 4 36 36 H 1.09006 * 109.46645 * 60.00444 * 8 7 6 37 37 H 1.08995 * 109.47330 * 299.99875 * 8 7 6 38 38 H 0.96997 * 120.00171 * 3.92917 * 11 9 8 39 39 H 1.08002 * 119.98683 * 359.97438 * 13 12 11 40 40 H 1.07995 * 119.91015 * 180.02562 * 14 13 12 41 41 H 1.08003 * 120.01596 * 180.02562 * 17 15 14 42 42 H 0.97003 * 119.99525 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2764 2.2969 -0.0002 7 6 5.7368 2.1812 -0.0003 8 6 6.3591 3.5790 0.0009 9 6 7.8614 3.4600 0.0002 10 8 8.3831 2.3649 -0.0016 11 7 8.6253 4.5704 0.0015 12 6 10.0195 4.4615 -0.0823 13 6 10.6541 3.3075 0.3531 14 6 12.0293 3.2011 0.2694 15 6 12.7783 4.2453 -0.2485 16 9 14.1226 4.1361 -0.3276 17 6 12.1530 5.3996 -0.6848 18 6 10.7725 5.5129 -0.6047 19 8 10.1559 6.6422 -1.0379 20 6 10.9480 7.6615 -1.4264 21 1 12.0187 7.5904 -1.3036 22 6 10.3883 8.8009 -1.9836 23 7 11.1615 9.7958 -2.3624 24 14 8.5366 8.9236 -2.1966 25 1 7.9371 9.5259 -0.9788 26 1 8.2291 9.7759 -3.3731 27 1 7.9716 7.5666 -2.4073 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8592 3.1726 0.0009 34 1 6.0585 1.6407 -0.8905 35 1 6.0585 1.6399 0.8894 36 1 6.0374 4.1191 0.8914 37 1 6.0375 4.1206 -0.8886 38 1 8.2098 5.4449 0.0605 39 1 10.0731 2.4919 0.7577 40 1 12.5215 2.3016 0.6085 41 1 12.7391 6.2121 -1.0885 42 1 10.7699 10.5929 -2.7526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645607099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:58 Heat of formation + Delta-G solvation = -179.414890 kcal Electronic energy + Delta-G solvation = -28245.888528 eV Core-core repulsion = 23720.019761 eV Total energy + Delta-G solvation = -4525.868766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.87568 -41.82096 -40.86916 -40.32433 -38.45922 -38.13510 -36.26924 -35.67676 -34.46786 -32.60355 -31.22520 -30.32995 -29.31751 -27.36118 -26.84818 -25.08675 -23.85063 -23.06079 -21.91877 -21.30670 -20.16238 -19.68862 -18.63184 -18.40447 -18.05283 -17.63794 -17.41431 -17.17025 -16.98853 -16.63653 -16.60873 -16.22614 -15.86855 -15.80316 -15.53390 -15.41917 -15.38644 -15.07872 -14.70310 -14.53113 -14.25408 -14.02213 -13.84800 -13.62968 -13.19312 -13.09219 -12.94199 -12.59487 -12.49962 -12.38556 -12.33346 -12.15264 -11.66624 -11.36630 -11.00066 -10.91927 -10.74171 -10.72738 -10.17995 -9.64601 -8.82775 -8.50406 -6.25851 0.11359 0.37935 1.36595 1.42766 1.51907 1.55528 1.55799 1.66193 2.20024 2.29204 2.61696 2.76497 3.00487 3.15729 3.35991 3.53522 3.81415 3.82797 3.95204 4.07276 4.13687 4.23762 4.27083 4.31780 4.48544 4.52461 4.58314 4.60308 4.83462 4.86079 4.89875 4.96522 5.09973 5.16143 5.29400 5.33212 5.42703 5.57757 5.81268 6.06104 6.06664 6.42993 6.55655 6.80463 7.07296 7.23504 7.41199 8.60384 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.002458 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.175901 B =11386.750658 C =13750.637157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.046 3.954 4 C 0.504 3.496 5 O -0.581 6.581 6 N -0.709 5.709 7 C 0.141 3.859 8 C -0.136 4.136 9 C 0.513 3.487 10 O -0.559 6.559 11 N -0.648 5.648 12 C 0.074 3.926 13 C -0.067 4.067 14 C -0.196 4.196 15 C 0.115 3.885 16 F -0.148 7.148 17 C -0.257 4.257 18 C 0.139 3.861 19 O -0.216 6.216 20 C -0.403 4.403 21 H 0.075 0.925 22 C 0.009 3.991 23 N -0.921 5.921 24 Si 0.976 3.024 25 H -0.255 1.255 26 H -0.279 1.279 27 H -0.245 1.245 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.424 0.576 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.424 0.576 39 H 0.171 0.829 40 H 0.157 0.843 41 H 0.126 0.874 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.271 -9.503 6.436 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.033 4.033 4 C 0.291 3.709 5 O -0.459 6.459 6 N -0.365 5.365 7 C 0.016 3.984 8 C -0.176 4.176 9 C 0.302 3.698 10 O -0.438 6.438 11 N -0.293 5.293 12 C -0.021 4.021 13 C -0.087 4.087 14 C -0.215 4.215 15 C 0.095 3.905 16 F -0.127 7.127 17 C -0.278 4.278 18 C 0.086 3.914 19 O -0.123 6.123 20 C -0.479 4.479 21 H 0.093 0.907 22 C -0.191 4.191 23 N -0.560 5.560 24 Si 0.796 3.204 25 H -0.179 1.179 26 H -0.204 1.204 27 H -0.168 1.168 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.263 0.737 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.261 0.739 39 H 0.188 0.812 40 H 0.174 0.826 41 H 0.143 0.857 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.664 -10.941 6.304 25.075 hybrid contribution 0.363 1.528 -0.466 1.638 sum -21.300 -9.413 5.838 24.008 Atomic orbital electron populations 1.23025 0.78230 1.04059 1.01752 1.87971 1.22197 1.27107 1.95834 1.22408 0.88456 0.86711 1.05737 1.21061 0.90478 0.83956 0.75398 1.90745 1.75940 1.28995 1.50269 1.45614 1.06115 1.09541 1.75228 1.20806 0.79138 0.96154 1.02294 1.21773 0.88229 0.98697 1.08880 1.21186 0.90777 0.83000 0.74798 1.90634 1.75240 1.27787 1.50091 1.43243 1.03498 1.11131 1.71388 1.17100 0.83662 0.94929 1.06457 1.21321 0.93458 0.96826 0.97071 1.21000 0.93915 0.99454 1.07155 1.17560 0.76636 0.95208 1.01111 1.91428 1.30362 1.96464 1.94398 1.20986 0.95065 1.00015 1.11747 1.18761 0.90517 0.87294 0.94793 1.83440 1.35103 1.19992 1.73735 1.20608 0.91400 0.93535 1.42323 0.90713 1.25444 1.05790 0.93409 0.94413 1.69758 1.38430 1.07081 1.40731 0.85144 0.76769 0.79739 0.78718 1.17922 1.20420 1.16781 0.92013 0.92151 0.89101 0.86742 0.86976 0.73724 0.92926 0.92188 0.83818 0.84909 0.73884 0.81241 0.82552 0.85662 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.41 -7.52 10.24 -129.94 -1.33 -8.85 16 3 C 0.05 0.50 6.42 71.24 0.46 0.95 16 4 C 0.50 9.71 7.91 87.66 0.69 10.41 16 5 O -0.58 -18.78 16.50 16.02 0.26 -18.52 16 6 N -0.71 -8.73 5.56 -463.07 -2.57 -11.30 16 7 C 0.14 2.54 4.96 86.38 0.43 2.97 16 8 C -0.14 -1.74 5.82 29.85 0.17 -1.57 16 9 C 0.51 12.42 7.72 87.66 0.68 13.10 16 10 O -0.56 -17.55 12.91 -3.09 -0.04 -17.59 16 11 N -0.65 -17.86 5.28 -303.03 -1.60 -19.46 16 12 C 0.07 2.63 6.47 38.23 0.25 2.88 16 13 C -0.07 -2.24 8.79 22.37 0.20 -2.04 16 14 C -0.20 -6.50 10.02 22.33 0.22 -6.28 16 15 C 0.11 4.42 7.29 22.37 0.16 4.58 16 16 F -0.15 -5.59 17.26 44.97 0.78 -4.82 16 17 C -0.26 -11.25 9.11 22.42 0.20 -11.04 16 18 C 0.14 5.90 6.66 22.69 0.15 6.05 16 19 O -0.22 -10.05 8.01 -22.71 -0.18 -10.24 16 20 C -0.40 -21.61 9.90 67.92 0.67 -20.94 16 21 H 0.08 4.37 5.52 -2.91 -0.02 4.36 16 22 C 0.01 0.45 5.49 84.83 0.47 0.92 16 23 N -0.92 -51.71 13.96 21.61 0.30 -51.40 16 24 Si 0.98 38.71 28.62 68.60 1.96 40.67 16 25 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 26 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.24 -8.96 7.11 99.48 0.71 -8.25 16 28 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.42 1.19 8.47 -92.71 -0.79 0.40 16 34 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 35 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 36 H 0.14 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.42 10.02 8.36 -92.71 -0.78 9.24 16 39 H 0.17 5.41 5.52 -2.91 -0.02 5.40 16 40 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 41 H 0.13 6.04 5.71 -2.91 -0.02 6.02 16 42 H 0.29 14.70 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -80.01 370.37 3.13 -76.88 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.46 Total: 23.16 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 6.00 Total: 1.46 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -3.87 Total: -82.17 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -1.29 Total: -55.19 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.78 Total: -4.82 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.96 Total: 40.67 kcal Total: -80.01 3.13 -76.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645607099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.531 kcal (2) G-P(sol) polarization free energy of solvation -80.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds