Wall clock time and date at job start Tue Mar 31 2020 23:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00275 * 2 1 4 4 H 1.48490 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46638 * 299.99929 * 3 2 1 6 6 H 1.48498 * 109.47165 * 59.99320 * 3 2 1 7 7 C 1.37881 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47223 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47456 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99633 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00009 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99664 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47107 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47210 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.47116 * 179.97438 * 16 15 14 18 18 C 1.38233 * 120.00109 * 269.72529 * 17 16 15 19 19 C 1.38238 * 119.99754 * 179.76611 * 18 17 16 20 20 C 1.38234 * 120.00038 * 0.48818 * 19 18 17 21 21 S 1.76199 * 120.00356 * 179.76975 * 20 19 18 22 22 N 1.65603 * 107.21663 * 270.02171 * 21 20 19 23 23 O 1.42100 * 106.39750 * 23.55962 * 21 20 19 24 24 O 1.42096 * 106.40667 * 156.48208 * 21 20 19 25 25 C 1.38238 * 120.00047 * 359.78460 * 20 19 18 26 26 C 1.38235 * 120.00108 * 359.96171 * 25 20 19 27 27 H 0.96998 * 119.99893 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47028 * 60.00606 * 9 7 2 29 29 H 1.08991 * 109.47399 * 300.00368 * 9 7 2 30 30 H 1.09008 * 109.47046 * 60.00409 * 10 9 7 31 31 H 1.09003 * 109.47659 * 300.00232 * 10 9 7 32 32 H 0.97000 * 120.00231 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.47446 * 60.00019 * 14 13 11 34 34 H 1.09000 * 109.47078 * 299.99722 * 14 13 11 35 35 H 1.09000 * 109.47531 * 59.99670 * 15 14 13 36 36 H 1.09008 * 109.47250 * 300.00244 * 15 14 13 37 37 H 1.09000 * 109.46884 * 60.00289 * 16 15 14 38 38 H 1.09000 * 109.46955 * 299.99604 * 16 15 14 39 39 H 1.08004 * 119.99934 * 0.02562 * 18 17 16 40 40 H 1.07999 * 119.99931 * 180.25459 * 19 18 17 41 41 H 0.97001 * 120.00190 * 149.99724 * 22 21 20 42 42 H 0.96998 * 119.99944 * 329.99950 * 22 21 20 43 43 H 1.08000 * 120.00559 * 179.97438 * 25 20 19 44 44 H 1.07999 * 120.00165 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4917 -4.9672 0.0020 12 8 0.2789 -4.9672 0.0020 13 7 2.1656 -6.1344 0.0024 14 6 1.4330 -7.4031 0.0035 15 6 2.4272 -8.5660 0.0044 16 6 1.6622 -9.8910 0.0049 17 6 2.6416 -11.0365 0.0051 18 6 3.0862 -11.5660 -1.1918 19 6 3.9883 -12.6135 -1.1915 20 6 4.4378 -13.1382 0.0057 21 16 5.5829 -14.4774 0.0062 22 7 4.6992 -15.8779 0.0067 23 8 6.2574 -14.4289 -1.2436 24 8 6.2575 -14.4282 1.2559 25 6 3.9888 -12.6124 1.2028 26 6 3.0908 -11.5614 1.2025 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5575 -0.8881 29 1 0.6246 -2.5563 0.8918 30 1 2.8725 -3.6040 0.8910 31 1 2.8712 -3.6048 -0.8890 32 1 3.1356 -6.1344 0.0020 33 1 0.8060 -7.4614 -0.8862 34 1 0.8068 -7.4603 0.8938 35 1 3.0540 -8.5076 0.8942 36 1 3.0539 -8.5090 -0.8857 37 1 1.0359 -9.9492 -0.8853 38 1 1.0354 -9.9483 0.8948 39 1 2.7322 -11.1585 -2.1273 40 1 4.3389 -13.0245 -2.1267 41 1 5.0556 -16.6765 -0.4131 42 1 3.8251 -15.8997 0.4267 43 1 4.3397 -13.0225 2.1383 44 1 2.7397 -11.1509 2.1377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647791749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:14 Heat of formation + Delta-G solvation = -114.127753 kcal Electronic energy + Delta-G solvation = -25181.038781 eV Core-core repulsion = 21224.214253 eV Total energy + Delta-G solvation = -3956.824527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.05691 -39.14783 -37.63922 -36.32011 -36.06366 -33.82334 -33.70488 -33.44767 -31.62126 -31.25825 -30.41705 -26.88861 -25.30133 -23.45734 -22.94230 -21.62524 -21.41445 -20.07234 -19.55056 -18.89746 -17.89260 -17.12048 -16.86697 -16.57019 -16.19127 -15.74693 -15.62218 -15.38853 -15.24720 -14.74500 -14.47812 -14.40289 -14.05760 -13.95118 -13.18756 -12.92515 -12.80195 -12.70214 -12.56781 -12.52004 -12.46249 -12.14524 -12.10557 -11.73735 -11.71401 -11.28398 -11.15617 -11.13461 -10.97069 -10.94364 -10.58259 -9.96771 -9.73466 -9.67304 -9.60157 -9.18110 -9.01120 -8.81827 -8.32787 -5.96749 -4.01048 -0.13527 0.23611 0.74978 2.57387 2.89361 3.23434 3.24269 3.32225 3.39126 3.42375 3.52298 3.92190 4.12640 4.24687 4.33977 4.47173 4.60957 4.75012 4.82716 4.84657 4.89698 5.12451 5.19321 5.30600 5.38378 5.40871 5.41739 5.47429 5.50593 5.62035 5.63832 5.77395 5.95882 5.98885 6.22231 6.23836 6.27619 6.45273 6.69293 6.88917 7.74202 7.85648 7.86255 8.06596 8.38303 8.76554 9.07818 9.62625 11.14265 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030173 B = 0.001387 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.774180 B =20186.243500 C =20621.155859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.535 6.535 13 N -0.746 5.746 14 C 0.119 3.881 15 C -0.125 4.125 16 C -0.089 4.089 17 C -0.017 4.017 18 C -0.138 4.138 19 C -0.014 4.014 20 C -0.685 4.685 21 S 2.703 3.297 22 N -1.249 6.249 23 O -0.964 6.964 24 O -0.962 6.962 25 C -0.019 4.019 26 C -0.138 4.138 27 H 0.260 0.740 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.397 0.603 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.421 0.579 42 H 0.417 0.583 43 H 0.142 0.858 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.122 -35.873 -0.007 36.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.411 6.411 13 N -0.401 5.401 14 C -0.005 4.005 15 C -0.163 4.163 16 C -0.127 4.127 17 C -0.017 4.017 18 C -0.157 4.157 19 C -0.033 4.033 20 C -0.772 4.772 21 S 2.792 3.208 22 N -0.923 5.923 23 O -0.953 6.953 24 O -0.951 6.951 25 C -0.039 4.039 26 C -0.157 4.157 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.231 0.769 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.153 0.847 40 H 0.160 0.840 41 H 0.251 0.749 42 H 0.244 0.756 43 H 0.160 0.840 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.101 -35.506 -0.010 36.419 hybrid contribution -0.030 0.893 -0.009 0.893 sum 8.072 -34.614 -0.019 35.542 Atomic orbital electron populations 1.70005 1.06067 1.26468 1.50299 1.25028 0.94823 0.99248 0.95300 0.86531 0.80006 0.83814 0.77580 1.19753 1.21017 1.21022 1.21266 0.92981 0.91015 1.51262 0.92541 1.18905 0.93200 0.89424 0.98619 1.21870 1.00718 0.91959 1.02486 1.21576 0.88649 0.85684 0.74348 1.90668 1.14507 1.87678 1.48212 1.46204 1.10070 1.05615 1.78180 1.21220 0.94419 0.82563 1.02292 1.21764 0.98476 0.92658 1.03393 1.20716 0.96289 0.91237 1.04451 1.20330 0.93991 0.94114 0.93252 1.21268 0.98694 0.97415 0.98351 1.20950 0.92130 0.93728 0.96541 1.30592 1.23421 1.23478 0.99753 1.01495 0.72814 0.72660 0.73878 1.53139 1.34761 1.28962 1.75422 1.93604 1.71508 1.86294 1.43920 1.93620 1.70449 1.86247 1.44777 1.20986 0.92379 0.93984 0.96526 1.21262 0.98707 0.97383 0.98343 0.93011 0.95828 0.95825 0.90246 0.90248 0.76910 0.91764 0.91771 0.90883 0.90892 0.89766 0.89758 0.84680 0.84028 0.74901 0.75594 0.84009 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 10 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 11 C 0.51 9.67 7.83 -10.99 -0.09 9.58 16 12 O -0.54 -12.56 15.98 5.56 0.09 -12.48 16 13 N -0.75 -9.95 5.56 -60.29 -0.33 -10.28 16 14 C 0.12 1.31 5.67 -4.04 -0.02 1.29 16 15 C -0.13 -0.90 5.31 -26.73 -0.14 -1.04 16 16 C -0.09 -0.52 5.35 -27.88 -0.15 -0.67 16 17 C -0.02 -0.10 5.13 -104.62 -0.54 -0.64 16 18 C -0.14 -0.86 9.70 -39.58 -0.38 -1.25 16 19 C -0.01 -0.09 9.52 -39.58 -0.38 -0.47 16 20 C -0.68 -4.39 5.97 -39.58 -0.24 -4.63 16 21 S 2.70 17.09 6.28 -107.50 -0.68 16.41 16 22 N -1.25 -2.95 9.52 60.35 0.57 -2.38 16 23 O -0.96 -9.16 17.28 -57.17 -0.99 -10.14 16 24 O -0.96 -9.30 17.28 -57.17 -0.99 -10.29 16 25 C -0.02 -0.12 9.52 -39.58 -0.38 -0.50 16 26 C -0.14 -0.85 9.70 -39.58 -0.38 -1.23 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.40 4.11 8.47 -40.82 -0.35 3.76 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 39 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 40 H 0.14 0.73 7.62 -52.49 -0.40 0.33 16 41 H 0.42 0.40 8.96 -34.47 -0.31 0.09 16 42 H 0.42 0.08 8.96 -34.47 -0.31 -0.23 16 43 H 0.14 0.69 7.62 -52.49 -0.40 0.29 16 44 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -40.52 389.26 -10.49 -51.01 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.37 Total: -2.43 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -3.38 Total: -15.23 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.98 Total: -39.38 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.89 Total: -32.91 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 17.09 SS G_CDS: -0.68 Total: 16.41 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -40.52 -10.49 -51.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647791749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.119 kcal (2) G-P(sol) polarization free energy of solvation -40.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds