Wall clock time and date at job start Tue Mar 31 2020 23:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00275 * 2 1 4 4 H 1.48490 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46638 * 299.99929 * 3 2 1 6 6 H 1.48498 * 109.47165 * 59.99320 * 3 2 1 7 7 C 1.37881 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47223 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47456 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99633 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00009 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99664 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47107 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47210 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.47116 * 179.97438 * 16 15 14 18 18 C 1.38233 * 120.00109 * 269.72529 * 17 16 15 19 19 C 1.38238 * 119.99754 * 179.76611 * 18 17 16 20 20 C 1.38234 * 120.00038 * 0.48818 * 19 18 17 21 21 S 1.76199 * 120.00356 * 179.76975 * 20 19 18 22 22 N 1.65603 * 107.21663 * 270.02171 * 21 20 19 23 23 O 1.42100 * 106.39750 * 23.55962 * 21 20 19 24 24 O 1.42096 * 106.40667 * 156.48208 * 21 20 19 25 25 C 1.38238 * 120.00047 * 359.78460 * 20 19 18 26 26 C 1.38235 * 120.00108 * 359.96171 * 25 20 19 27 27 H 0.96998 * 119.99893 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47028 * 60.00606 * 9 7 2 29 29 H 1.08991 * 109.47399 * 300.00368 * 9 7 2 30 30 H 1.09008 * 109.47046 * 60.00409 * 10 9 7 31 31 H 1.09003 * 109.47659 * 300.00232 * 10 9 7 32 32 H 0.97000 * 120.00231 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.47446 * 60.00019 * 14 13 11 34 34 H 1.09000 * 109.47078 * 299.99722 * 14 13 11 35 35 H 1.09000 * 109.47531 * 59.99670 * 15 14 13 36 36 H 1.09008 * 109.47250 * 300.00244 * 15 14 13 37 37 H 1.09000 * 109.46884 * 60.00289 * 16 15 14 38 38 H 1.09000 * 109.46955 * 299.99604 * 16 15 14 39 39 H 1.08004 * 119.99934 * 0.02562 * 18 17 16 40 40 H 1.07999 * 119.99931 * 180.25459 * 19 18 17 41 41 H 0.97001 * 120.00190 * 149.99724 * 22 21 20 42 42 H 0.96998 * 119.99944 * 329.99950 * 22 21 20 43 43 H 1.08000 * 120.00559 * 179.97438 * 25 20 19 44 44 H 1.07999 * 120.00165 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4917 -4.9672 0.0020 12 8 0.2789 -4.9672 0.0020 13 7 2.1656 -6.1344 0.0024 14 6 1.4330 -7.4031 0.0035 15 6 2.4272 -8.5660 0.0044 16 6 1.6622 -9.8910 0.0049 17 6 2.6416 -11.0365 0.0051 18 6 3.0862 -11.5660 -1.1918 19 6 3.9883 -12.6135 -1.1915 20 6 4.4378 -13.1382 0.0057 21 16 5.5829 -14.4774 0.0062 22 7 4.6992 -15.8779 0.0067 23 8 6.2574 -14.4289 -1.2436 24 8 6.2575 -14.4282 1.2559 25 6 3.9888 -12.6124 1.2028 26 6 3.0908 -11.5614 1.2025 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5575 -0.8881 29 1 0.6246 -2.5563 0.8918 30 1 2.8725 -3.6040 0.8910 31 1 2.8712 -3.6048 -0.8890 32 1 3.1356 -6.1344 0.0020 33 1 0.8060 -7.4614 -0.8862 34 1 0.8068 -7.4603 0.8938 35 1 3.0540 -8.5076 0.8942 36 1 3.0539 -8.5090 -0.8857 37 1 1.0359 -9.9492 -0.8853 38 1 1.0354 -9.9483 0.8948 39 1 2.7322 -11.1585 -2.1273 40 1 4.3389 -13.0245 -2.1267 41 1 5.0556 -16.6765 -0.4131 42 1 3.8251 -15.8997 0.4267 43 1 4.3397 -13.0225 2.1383 44 1 2.7397 -11.1509 2.1377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647791749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:14 Heat of formation + Delta-G solvation = -146.445309 kcal Electronic energy + Delta-G solvation = -25182.440175 eV Core-core repulsion = 21224.214253 eV Total energy + Delta-G solvation = -3958.225922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.73204 -40.39943 -38.26775 -37.01131 -36.92302 -35.55363 -34.69716 -34.04548 -33.03250 -32.05872 -31.37857 -28.20375 -26.72646 -24.03062 -23.89800 -22.96304 -22.24035 -21.01765 -20.53629 -19.32784 -18.79479 -18.33337 -17.58595 -17.39795 -17.20284 -16.98989 -16.66790 -16.44128 -16.11909 -16.00557 -15.51379 -15.29861 -14.72380 -14.53197 -14.47677 -14.21435 -14.16952 -13.43152 -13.30392 -13.25380 -13.22338 -13.20572 -13.11748 -13.06986 -12.83750 -12.45422 -12.36607 -12.27417 -11.92105 -11.78422 -11.70516 -11.63039 -11.30410 -11.28282 -10.75069 -10.57862 -10.17105 -10.05768 -10.03932 -8.18150 -6.32053 -0.61498 -0.25229 0.30126 1.42518 1.43702 1.57068 1.72988 2.13644 2.28498 2.42715 2.48178 2.78532 3.15054 3.44021 3.58023 3.79331 3.93171 4.04052 4.05934 4.23593 4.27232 4.35285 4.38404 4.53157 4.55930 4.63359 4.64236 4.73511 4.90862 4.95187 5.06672 5.09409 5.12176 5.16220 5.25755 5.26683 5.47806 5.52260 5.54916 5.63880 5.84201 5.85972 6.18084 6.34704 6.63321 6.86878 7.36508 7.38877 8.94721 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030173 B = 0.001387 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.774180 B =20186.243500 C =20621.155859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.040 3.960 10 C -0.121 4.121 11 C 0.509 3.491 12 O -0.591 6.591 13 N -0.721 5.721 14 C 0.117 3.883 15 C -0.112 4.112 16 C -0.085 4.085 17 C -0.022 4.022 18 C -0.144 4.144 19 C -0.026 4.026 20 C -0.685 4.685 21 S 2.726 3.274 22 N -1.233 6.233 23 O -0.997 6.997 24 O -0.997 6.997 25 C -0.030 4.030 26 C -0.143 4.143 27 H 0.263 0.737 28 H -0.018 1.018 29 H -0.018 1.018 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.416 0.584 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.430 0.570 42 H 0.429 0.571 43 H 0.152 0.848 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.026 -36.608 0.040 37.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.160 4.160 11 C 0.298 3.702 12 O -0.471 6.471 13 N -0.374 5.374 14 C -0.007 4.007 15 C -0.150 4.150 16 C -0.123 4.123 17 C -0.022 4.022 18 C -0.163 4.163 19 C -0.045 4.045 20 C -0.774 4.774 21 S 2.815 3.185 22 N -0.912 5.912 23 O -0.987 6.987 24 O -0.987 6.987 25 C -0.049 4.049 26 C -0.162 4.162 27 H 0.071 0.929 28 H 0.001 0.999 29 H 0.001 0.999 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.253 0.747 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.262 0.738 42 H 0.259 0.741 43 H 0.170 0.830 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.075 -36.313 0.038 37.685 hybrid contribution -0.674 1.023 -0.024 1.226 sum 9.401 -35.290 0.014 36.521 Atomic orbital electron populations 1.70180 1.08303 1.27724 1.51552 1.26133 0.95720 1.03929 0.94644 0.85269 0.79285 0.78109 0.77545 1.17658 1.20633 1.20641 1.21760 0.94017 0.91656 1.50663 0.90613 1.18704 0.93777 0.92547 0.94722 1.21642 0.99310 0.90278 1.04817 1.21310 0.87788 0.86901 0.74225 1.90654 1.16739 1.88470 1.51236 1.45925 1.11063 1.04894 1.75526 1.21391 0.95253 0.82456 1.01591 1.21658 0.97581 0.91501 1.04212 1.20674 0.96165 0.90228 1.05201 1.20392 0.94097 0.94324 0.93398 1.21497 0.98452 0.97262 0.99065 1.21153 0.92418 0.94058 0.96915 1.30502 1.23302 1.23531 1.00081 1.00524 0.72571 0.72971 0.72429 1.52740 1.35076 1.27969 1.75406 1.93557 1.73008 1.86986 1.45157 1.93580 1.72005 1.86960 1.46113 1.21205 0.92545 0.94218 0.96906 1.21502 0.98437 0.97219 0.99037 0.92871 0.99929 0.99918 0.87795 0.87808 0.74665 0.92562 0.92545 0.90034 0.90081 0.89155 0.89088 0.83277 0.83229 0.73759 0.74050 0.82998 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.53 13.29 21.45 0.28 -59.24 16 2 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 3 Si 0.97 44.30 29.54 68.60 2.03 46.32 16 4 H -0.25 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.04 2.24 4.26 29.84 0.13 2.37 16 10 C -0.12 -4.78 5.64 29.85 0.17 -4.61 16 11 C 0.51 19.23 7.83 87.66 0.69 19.92 16 12 O -0.59 -28.69 15.98 -3.03 -0.05 -28.74 16 13 N -0.72 -17.89 5.56 -463.06 -2.57 -20.47 16 14 C 0.12 2.38 5.67 86.38 0.49 2.87 16 15 C -0.11 -1.32 5.31 30.59 0.16 -1.15 16 16 C -0.08 -0.80 5.35 29.85 0.16 -0.64 16 17 C -0.02 -0.23 5.13 -19.86 -0.10 -0.33 16 18 C -0.14 -1.52 9.70 22.27 0.22 -1.30 16 19 C -0.03 -0.30 9.52 22.27 0.21 -0.09 16 20 C -0.69 -7.99 5.97 22.27 0.13 -7.86 16 21 S 2.73 32.77 6.28 -56.49 -0.35 32.42 16 22 N -1.23 -4.26 9.52 37.02 0.35 -3.91 16 23 O -1.00 -18.64 17.28 -128.00 -2.21 -20.86 16 24 O -1.00 -18.95 17.28 -128.00 -2.21 -21.16 16 25 C -0.03 -0.32 9.52 22.27 0.21 -0.11 16 26 C -0.14 -1.46 9.70 22.27 0.22 -1.25 16 27 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 28 H -0.02 -1.12 8.10 -2.38 -0.02 -1.14 16 29 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 30 H 0.10 3.60 8.14 -2.38 -0.02 3.58 16 31 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 32 H 0.42 7.30 8.47 -92.71 -0.79 6.51 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.09 0.76 8.08 -2.39 -0.02 0.74 16 38 H 0.09 0.76 8.09 -2.39 -0.02 0.74 16 39 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.15 1.38 7.62 -2.91 -0.02 1.36 16 41 H 0.43 0.24 8.96 -96.74 -0.87 -0.63 16 42 H 0.43 -0.55 8.96 -96.75 -0.87 -1.41 16 43 H 0.15 1.27 7.62 -2.91 -0.02 1.25 16 44 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -90.78 389.26 -2.84 -93.61 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -1.48 Total: 4.85 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 3.38 Total: -22.83 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -1.94 Total: -83.62 kcal Atomic # 8 Polarization: -66.28 SS G_CDS: -4.47 Total: -70.75 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 32.77 SS G_CDS: -0.35 Total: 32.42 kcal Total: -90.78 -2.84 -93.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647791749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.832 kcal (2) G-P(sol) polarization free energy of solvation -90.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds