Wall clock time and date at job start Tue Mar 31 2020 23:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48503 * 109.47450 * 239.99959 * 3 2 1 5 5 H 1.48500 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46855 * 120.00436 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.46498 * 119.99612 * 65.28269 * 14 11 10 16 16 C 1.50703 * 109.47212 * 164.72359 * 15 14 11 17 17 C 1.38181 * 120.60470 * 104.71522 * 16 15 14 18 18 C 1.39327 * 118.96287 * 179.82547 * 17 16 15 19 19 C 1.37525 * 119.26991 * 0.27379 * 18 17 16 20 20 N 1.32767 * 120.15921 * 0.02562 * 19 18 17 21 21 C 1.31921 * 122.35181 * 359.90795 * 20 19 18 22 22 O 1.35672 * 119.77088 * 179.88446 * 21 20 19 23 23 C 1.50734 * 122.35150 * 180.24749 * 19 18 17 24 24 C 1.52713 * 110.58261 * 342.08994 * 23 19 18 25 25 C 1.53337 * 108.42180 * 51.29332 * 24 23 19 26 26 C 1.50515 * 117.89863 * 179.87002 * 18 17 16 27 27 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46912 * 60.00244 * 9 7 2 29 29 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 30 30 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 31 31 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 32 32 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 33 33 H 1.08996 * 109.46882 * 284.72133 * 15 14 11 34 34 H 1.08999 * 109.47498 * 44.72066 * 15 14 11 35 35 H 1.07996 * 120.52105 * 0.06971 * 17 16 15 36 36 H 0.96708 * 113.99731 * 270.01682 * 22 21 20 37 37 H 1.09007 * 109.25473 * 102.37353 * 23 19 18 38 38 H 1.08999 * 109.25655 * 221.83993 * 23 19 18 39 39 H 1.09002 * 109.67516 * 171.02420 * 24 23 19 40 40 H 1.08994 * 109.67539 * 291.56034 * 24 23 19 41 41 H 1.08999 * 109.68993 * 49.87280 * 25 24 23 42 42 H 1.08994 * 109.68645 * 170.44637 * 25 24 23 43 43 H 1.09006 * 109.25333 * 42.57806 * 26 18 17 44 44 H 1.08995 * 109.25880 * 283.14196 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.4164 -6.5273 1.1478 16 6 4.1316 -7.8519 1.0756 17 6 5.4588 -7.9150 0.6960 18 6 6.0874 -9.1573 0.6444 19 6 5.3718 -10.2869 0.9660 20 7 4.0961 -10.1898 1.3207 21 6 3.4667 -9.0321 1.3827 22 8 2.1611 -8.9939 1.7495 23 6 5.9836 -11.6642 0.9389 24 6 7.2702 -11.6641 0.1162 25 6 8.1688 -10.5293 0.6222 26 6 7.5323 -9.1986 0.2250 27 1 -0.4850 0.8402 -0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8725 -3.6047 0.8878 31 1 2.8712 -3.6040 -0.8922 32 1 2.6168 -6.9855 -0.7650 33 1 4.1472 -5.7187 1.1359 34 1 2.8351 -6.4781 2.0686 35 1 6.0014 -7.0151 0.4471 36 1 1.5424 -9.0684 1.0099 37 1 6.2088 -11.9776 1.9583 38 1 5.2746 -12.3638 0.4962 39 1 7.7823 -12.6188 0.2358 40 1 7.0333 -11.5034 -0.9355 41 1 8.2555 -10.5856 1.7073 42 1 9.1566 -10.6135 0.1694 43 1 8.0706 -8.3839 0.7096 44 1 7.5965 -9.0779 -0.8563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671063763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:58 Heat of formation + Delta-G solvation = -103.357003 kcal Electronic energy + Delta-G solvation = -27019.176088 eV Core-core repulsion = 23062.818616 eV Total energy + Delta-G solvation = -3956.357473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.22274 -38.34271 -36.64806 -36.13255 -35.56186 -35.36995 -33.91443 -33.33531 -31.18534 -30.50520 -29.85393 -26.06888 -25.62529 -24.21859 -23.05332 -22.66250 -21.69755 -20.20165 -19.02057 -18.58479 -17.69021 -17.37941 -16.69528 -16.33022 -15.96684 -15.54882 -15.39947 -14.77019 -14.67536 -14.55042 -14.32299 -14.29348 -13.84554 -13.55627 -13.52894 -13.32381 -13.13469 -12.62856 -12.48966 -12.03944 -11.93426 -11.77962 -11.62878 -11.60782 -11.53149 -11.36312 -11.18653 -11.08675 -11.00993 -10.99038 -10.46733 -10.39996 -9.94682 -9.86603 -9.68872 -9.51136 -9.08644 -8.82165 -8.51781 -6.14034 -4.19891 0.54030 0.78896 0.92968 2.99934 3.24818 3.25642 3.30728 3.32297 3.47892 4.05784 4.17927 4.20777 4.35650 4.42094 4.44074 4.48497 4.52841 4.68306 4.71161 4.96774 5.05207 5.10756 5.14754 5.21041 5.24717 5.35231 5.38567 5.46883 5.51693 5.58173 5.59990 5.63705 5.66625 5.83976 5.84262 5.86812 5.94994 6.22860 6.45462 6.96648 7.27880 7.31221 7.34155 7.67139 7.78382 8.15352 8.83171 9.44882 10.96917 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.002434 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.769885 B =11499.804800 C =12601.216852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.589 4.589 11 S 2.592 3.408 12 O -0.966 6.966 13 O -0.961 6.961 14 N -1.126 6.126 15 C 0.166 3.834 16 C -0.163 4.163 17 C -0.048 4.048 18 C -0.141 4.141 19 C 0.159 3.841 20 N -0.509 5.509 21 C 0.334 3.666 22 O -0.473 6.473 23 C -0.070 4.070 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.075 4.075 27 H 0.266 0.734 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.411 0.589 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.143 0.857 36 H 0.402 0.598 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.107 -22.459 0.002 28.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.723 4.723 11 S 2.689 3.311 12 O -0.957 6.957 13 O -0.950 6.950 14 N -0.882 5.882 15 C 0.040 3.960 16 C -0.168 4.168 17 C -0.074 4.074 18 C -0.143 4.143 19 C 0.024 3.976 20 N -0.228 5.228 21 C 0.152 3.848 22 O -0.280 6.280 23 C -0.107 4.107 24 C -0.158 4.158 25 C -0.160 4.160 26 C -0.112 4.112 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.243 0.757 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.161 0.839 36 H 0.261 0.739 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.670 -23.085 0.965 27.918 hybrid contribution 1.181 1.768 -0.911 2.313 sum 16.851 -21.317 0.054 27.173 Atomic orbital electron populations 1.69949 1.06109 1.27334 1.49396 1.25071 0.94986 0.99550 0.94898 0.86523 0.79488 0.82531 0.78674 1.20102 1.21067 1.20081 1.20955 0.92997 0.89780 1.52353 0.92113 1.18962 0.92693 0.90524 0.98933 1.30445 1.13747 1.18030 1.10057 1.05629 0.74619 0.76621 0.74196 1.93561 1.71426 1.85353 1.45348 1.93562 1.71204 1.84838 1.45446 1.55914 1.53106 1.52463 1.26751 1.20004 0.92846 0.93133 0.90066 1.20876 0.95697 0.96187 1.03995 1.21538 0.93228 0.98040 0.94580 1.20453 0.97715 0.92985 1.03152 1.20784 0.87876 0.95391 0.93550 1.67050 1.11066 1.29244 1.15422 1.18905 0.86403 0.87233 0.92277 1.84779 1.11991 1.94696 1.36572 1.20402 0.96735 0.91800 1.01810 1.21583 0.95085 0.99196 0.99888 1.21587 0.98745 0.94027 1.01604 1.20401 0.90444 0.98783 1.01619 0.92448 0.94842 0.94757 0.86283 0.86090 0.75692 0.90558 0.88380 0.83897 0.73939 0.89679 0.89594 0.90744 0.91329 0.91388 0.90984 0.90318 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 10 C -0.59 -10.77 6.02 37.16 0.22 -10.55 16 11 S 2.59 43.91 5.46 -107.50 -0.59 43.32 16 12 O -0.97 -19.26 18.08 -57.54 -1.04 -20.30 16 13 O -0.96 -19.24 17.49 -57.54 -1.01 -20.24 16 14 N -1.13 -13.51 5.88 -11.66 -0.07 -13.57 16 15 C 0.17 1.84 5.91 -5.19 -0.03 1.81 16 16 C -0.16 -1.73 5.30 -104.40 -0.55 -2.29 16 17 C -0.05 -0.42 9.38 -39.20 -0.37 -0.78 16 18 C -0.14 -1.19 5.74 -104.57 -0.60 -1.79 16 19 C 0.16 1.56 6.62 -82.43 -0.55 1.02 16 20 N -0.51 -6.23 10.21 -9.58 -0.10 -6.33 16 21 C 0.33 4.08 7.73 -17.27 -0.13 3.95 16 22 O -0.47 -5.92 12.93 -18.72 -0.24 -6.16 16 23 C -0.07 -0.49 5.91 -28.01 -0.17 -0.66 16 24 C -0.12 -0.59 5.97 -26.70 -0.16 -0.75 16 25 C -0.12 -0.58 5.99 -26.68 -0.16 -0.74 16 26 C -0.07 -0.42 5.68 -28.10 -0.16 -0.58 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.12 1.92 8.14 -51.92 -0.42 1.49 16 31 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 32 H 0.41 4.18 8.61 -34.47 -0.30 3.89 16 33 H 0.08 0.68 8.00 -51.93 -0.42 0.26 16 34 H 0.10 1.22 7.57 -51.93 -0.39 0.82 16 35 H 0.14 0.92 8.04 -52.49 -0.42 0.50 16 36 H 0.40 3.64 9.06 45.56 0.41 4.05 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 41 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.38 8.13 -51.93 -0.42 -0.04 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -36.87 378.93 -10.54 -47.41 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.72 Total: 3.56 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -3.20 Total: -23.81 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.57 Total: -45.47 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -2.29 Total: -46.71 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 43.91 SS G_CDS: -0.59 Total: 43.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.87 -10.54 -47.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671063763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.944 kcal (2) G-P(sol) polarization free energy of solvation -36.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds