Wall clock time and date at job start Tue Mar 31 2020 23:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00337 * 2 1 4 4 H 1.48499 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47341 * 300.00990 * 3 2 1 6 6 H 1.48502 * 109.47025 * 60.00635 * 3 2 1 7 7 C 1.38811 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00072 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00301 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00238 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47374 * 34.99193 * 10 9 7 12 12 C 1.53008 * 109.46329 * 274.99712 * 10 9 7 13 13 O 1.42896 * 109.47176 * 294.99686 * 12 10 9 14 14 C 1.52997 * 109.47251 * 154.99902 * 10 9 7 15 15 N 1.46499 * 109.47012 * 304.99701 * 14 10 9 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 10 17 17 O 1.21286 * 120.00040 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00201 * 179.97438 * 16 15 14 19 19 C 1.52992 * 109.47592 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47482 * 179.97438 * 19 18 16 21 21 C 1.50701 * 109.47212 * 179.97438 * 20 19 18 22 22 C 1.38239 * 120.00487 * 100.00100 * 21 20 19 23 23 C 1.38220 * 120.01336 * 179.97438 * 22 21 20 24 24 C 1.38259 * 120.02394 * 0.03851 * 23 22 21 25 25 C 1.38197 * 120.01707 * 359.97438 * 24 23 22 26 26 C 1.38331 * 120.00622 * 279.72913 * 21 20 19 27 27 Cl 1.73596 * 120.01445 * 359.97409 * 26 21 20 28 28 H 0.97005 * 119.99803 * 359.97438 * 1 2 3 29 29 H 0.96995 * 119.99950 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.47030 * 55.00111 * 12 10 9 31 31 H 1.09001 * 109.46814 * 175.00074 * 12 10 9 32 32 H 0.96700 * 114.00148 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47045 * 184.99486 * 14 10 9 34 34 H 1.09001 * 109.46922 * 64.99694 * 14 10 9 35 35 H 0.96992 * 119.99793 * 359.97438 * 15 14 10 36 36 H 1.09002 * 109.47210 * 59.99599 * 18 16 15 37 37 H 1.09001 * 109.46665 * 299.99857 * 18 16 15 38 38 H 1.09002 * 109.47103 * 59.99616 * 19 18 16 39 39 H 1.08998 * 109.46862 * 300.00428 * 19 18 16 40 40 H 1.09002 * 109.47153 * 59.99783 * 20 19 18 41 41 H 1.09001 * 109.46832 * 299.99974 * 20 19 18 42 42 H 1.08002 * 119.99356 * 359.97438 * 22 21 20 43 43 H 1.08000 * 119.98661 * 180.02562 * 23 22 21 44 44 H 1.07999 * 119.99473 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00665 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9687 -3.5507 0.5887 12 6 2.4217 -4.0356 -1.4377 13 8 1.2274 -4.2885 -2.1804 14 6 1.1808 -4.7522 0.6091 15 7 0.7343 -4.3355 1.9407 16 6 -0.0547 -5.1478 2.6717 17 8 -0.3954 -6.2234 2.2268 18 6 -0.5136 -4.7195 4.0417 19 6 -1.3908 -5.8147 4.6513 20 6 -1.8562 -5.3801 6.0425 21 6 -2.7208 -6.4586 6.6427 22 6 -2.1871 -7.3391 7.5652 23 6 -2.9801 -8.3280 8.1162 24 6 -4.3073 -8.4378 7.7444 25 6 -4.8419 -7.5584 6.8221 26 6 -4.0501 -6.5643 6.2748 27 17 -4.7230 -5.4542 5.1222 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.9713 -3.2164 -1.9013 31 1 3.0422 -4.9317 -1.4313 32 1 1.3825 -4.5351 -3.1025 33 1 1.7557 -5.6747 0.6907 34 1 0.3132 -4.9200 -0.0291 35 1 1.0071 -3.4755 2.2966 36 1 -1.0886 -3.7970 3.9604 37 1 0.3543 -4.5516 4.6795 38 1 -0.8162 -6.7373 4.7326 39 1 -2.2586 -5.9822 4.0134 40 1 -2.4307 -4.4573 5.9617 41 1 -0.9881 -5.2129 6.6802 42 1 -1.1503 -7.2541 7.8555 43 1 -2.5628 -9.0154 8.8372 44 1 -4.9264 -9.2110 8.1749 45 1 -5.8787 -7.6441 6.5322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717768201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:12 Heat of formation + Delta-G solvation = -76.363196 kcal Electronic energy + Delta-G solvation = -26267.988404 eV Core-core repulsion = 22310.757764 eV Total energy + Delta-G solvation = -3957.230640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.80478 -39.24373 -37.13207 -36.57066 -35.15469 -34.73404 -33.41619 -31.67123 -31.16202 -30.91340 -28.45564 -27.19856 -25.01340 -23.65296 -22.97707 -22.61542 -21.03684 -20.09167 -19.66087 -17.62059 -17.32022 -16.64182 -16.45891 -16.21899 -15.76000 -15.52677 -15.32675 -14.66133 -14.16378 -14.08481 -14.02119 -13.94284 -13.56082 -13.36917 -13.22158 -12.94859 -12.78824 -12.35335 -12.17115 -11.86014 -11.79157 -11.58472 -11.53148 -11.45519 -11.34218 -10.89320 -10.86024 -10.76095 -10.62008 -10.54017 -10.07940 -9.79955 -9.47619 -9.33089 -9.16167 -8.98977 -8.86709 -8.49905 -7.04014 -5.82180 -3.12475 0.89040 0.98537 1.99958 3.07539 3.33362 3.37918 3.43611 3.46296 3.69674 4.41991 4.48805 4.51909 4.66755 4.91311 4.93589 4.99874 5.02022 5.14618 5.17683 5.36429 5.41612 5.46949 5.53428 5.55321 5.58470 5.66864 5.72594 5.80677 5.91747 5.95759 6.01402 6.04205 6.07229 6.12070 6.28508 6.35535 6.40386 6.52292 6.52600 6.77229 6.99854 7.62012 8.04563 8.21589 8.34790 8.69826 9.47075 10.02782 10.39419 11.39393 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.002223 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.876713 B =12590.848268 C =13467.963613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.065 0.935 12 C 0.059 3.941 13 O -0.560 6.560 14 C 0.119 3.881 15 N -0.714 5.714 16 C 0.509 3.491 17 O -0.556 6.556 18 C -0.141 4.141 19 C -0.096 4.096 20 C -0.088 4.088 21 C -0.066 4.066 22 C -0.107 4.107 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.110 4.110 26 C -0.034 4.034 27 Cl -0.061 7.061 28 H 0.255 0.745 29 H 0.389 0.611 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.363 0.637 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.409 0.591 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 -15.509 15.260 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.006 4.006 15 N -0.366 5.366 16 C 0.295 3.705 17 O -0.435 6.435 18 C -0.181 4.181 19 C -0.134 4.134 20 C -0.125 4.125 21 C -0.067 4.067 22 C -0.125 4.125 23 C -0.133 4.133 24 C -0.135 4.135 25 C -0.129 4.129 26 C -0.061 4.061 27 Cl -0.032 7.032 28 H 0.065 0.935 29 H 0.223 0.777 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.208 0.792 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.245 0.755 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.625 -15.854 15.421 22.595 hybrid contribution 0.558 1.396 -0.676 1.648 sum -4.067 -14.458 14.745 21.047 Atomic orbital electron populations 1.69692 1.05072 1.25594 1.56882 1.24752 0.95461 0.97652 1.02685 0.86156 0.78724 0.84246 0.77211 1.20620 1.21918 1.21847 1.19258 0.90920 0.84056 1.43554 0.91173 1.42380 1.06068 0.99040 1.87977 1.20593 0.95040 0.87083 0.91861 0.91735 1.23035 0.86496 0.97209 0.95470 1.86575 1.32157 1.91884 1.25694 1.21507 0.99393 0.96677 0.82999 1.46024 1.50823 1.21828 1.17921 1.20592 0.78226 0.84483 0.87183 1.90661 1.57010 1.23000 1.72855 1.21653 1.01332 1.00948 0.94143 1.21266 1.00078 0.97904 0.94112 1.20741 0.98610 0.96397 0.96732 1.19827 0.92401 0.97812 0.96663 1.21072 1.00198 0.94754 0.96462 1.21239 0.94059 0.98214 0.99828 1.21092 0.95679 0.99092 0.97614 1.21073 1.00127 0.94351 0.97312 1.20906 0.93834 0.95131 0.96232 1.98396 1.85048 1.61530 1.58248 0.93485 0.77669 0.93369 0.95576 0.79189 0.92349 0.90752 0.75498 0.88614 0.89111 0.91240 0.90653 0.90021 0.90436 0.85091 0.85519 0.85316 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.19 13.06 55.49 0.72 -26.46 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.25 -6.46 9.93 -15.06 -0.15 -6.61 16 8 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 9 N -0.71 -16.96 4.51 -53.42 -0.24 -17.20 16 10 C 0.17 3.16 2.84 -67.93 -0.19 2.96 16 11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 12 C 0.06 1.04 6.86 37.16 0.25 1.29 16 13 O -0.56 -10.16 12.64 -35.23 -0.45 -10.61 16 14 C 0.12 2.16 5.12 -4.04 -0.02 2.13 16 15 N -0.71 -12.24 5.39 -60.29 -0.32 -12.57 16 16 C 0.51 8.56 7.83 -10.99 -0.09 8.48 16 17 O -0.56 -11.17 15.98 5.55 0.09 -11.08 16 18 C -0.14 -1.78 5.70 -27.89 -0.16 -1.94 16 19 C -0.10 -1.17 4.44 -26.74 -0.12 -1.28 16 20 C -0.09 -0.87 4.80 -27.88 -0.13 -1.00 16 21 C -0.07 -0.67 5.14 -104.59 -0.54 -1.21 16 22 C -0.11 -0.91 9.67 -39.59 -0.38 -1.29 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 25 C -0.11 -1.00 9.83 -39.55 -0.39 -1.39 16 26 C -0.03 -0.37 6.31 -39.50 -0.25 -0.62 16 27 Cl -0.06 -0.71 26.66 -51.86 -1.38 -2.09 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.39 10.32 7.80 -40.82 -0.32 10.00 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.36 4.77 9.12 45.56 0.42 5.18 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.54 7.39 -51.93 -0.38 1.15 16 35 H 0.41 6.94 8.14 -40.82 -0.33 6.61 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.07 1.07 7.25 -51.93 -0.38 0.69 16 40 H 0.08 0.83 7.34 -51.93 -0.38 0.45 16 41 H 0.08 0.63 8.01 -51.93 -0.42 0.21 16 42 H 0.13 0.87 8.04 -52.49 -0.42 0.45 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -32.93 393.45 -9.71 -42.64 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -5.98 Total: 18.21 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -3.06 Total: -3.36 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.16 Total: -56.23 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.36 Total: -21.69 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.38 Total: -2.09 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.93 -9.71 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717768201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.719 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds