Wall clock time and date at job start Tue Mar 31 2020 23:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00337 * 2 1 4 4 H 1.48499 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47341 * 300.00990 * 3 2 1 6 6 H 1.48502 * 109.47025 * 60.00635 * 3 2 1 7 7 C 1.38811 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00072 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00301 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00238 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47374 * 34.99193 * 10 9 7 12 12 C 1.53008 * 109.46329 * 274.99712 * 10 9 7 13 13 O 1.42896 * 109.47176 * 294.99686 * 12 10 9 14 14 C 1.52997 * 109.47251 * 154.99902 * 10 9 7 15 15 N 1.46499 * 109.47012 * 304.99701 * 14 10 9 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 10 17 17 O 1.21286 * 120.00040 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00201 * 179.97438 * 16 15 14 19 19 C 1.52992 * 109.47592 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47482 * 179.97438 * 19 18 16 21 21 C 1.50701 * 109.47212 * 179.97438 * 20 19 18 22 22 C 1.38239 * 120.00487 * 100.00100 * 21 20 19 23 23 C 1.38220 * 120.01336 * 179.97438 * 22 21 20 24 24 C 1.38259 * 120.02394 * 0.03851 * 23 22 21 25 25 C 1.38197 * 120.01707 * 359.97438 * 24 23 22 26 26 C 1.38331 * 120.00622 * 279.72913 * 21 20 19 27 27 Cl 1.73596 * 120.01445 * 359.97409 * 26 21 20 28 28 H 0.97005 * 119.99803 * 359.97438 * 1 2 3 29 29 H 0.96995 * 119.99950 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.47030 * 55.00111 * 12 10 9 31 31 H 1.09001 * 109.46814 * 175.00074 * 12 10 9 32 32 H 0.96700 * 114.00148 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47045 * 184.99486 * 14 10 9 34 34 H 1.09001 * 109.46922 * 64.99694 * 14 10 9 35 35 H 0.96992 * 119.99793 * 359.97438 * 15 14 10 36 36 H 1.09002 * 109.47210 * 59.99599 * 18 16 15 37 37 H 1.09001 * 109.46665 * 299.99857 * 18 16 15 38 38 H 1.09002 * 109.47103 * 59.99616 * 19 18 16 39 39 H 1.08998 * 109.46862 * 300.00428 * 19 18 16 40 40 H 1.09002 * 109.47153 * 59.99783 * 20 19 18 41 41 H 1.09001 * 109.46832 * 299.99974 * 20 19 18 42 42 H 1.08002 * 119.99356 * 359.97438 * 22 21 20 43 43 H 1.08000 * 119.98661 * 180.02562 * 23 22 21 44 44 H 1.07999 * 119.99473 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00665 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9687 -3.5507 0.5887 12 6 2.4217 -4.0356 -1.4377 13 8 1.2274 -4.2885 -2.1804 14 6 1.1808 -4.7522 0.6091 15 7 0.7343 -4.3355 1.9407 16 6 -0.0547 -5.1478 2.6717 17 8 -0.3954 -6.2234 2.2268 18 6 -0.5136 -4.7195 4.0417 19 6 -1.3908 -5.8147 4.6513 20 6 -1.8562 -5.3801 6.0425 21 6 -2.7208 -6.4586 6.6427 22 6 -2.1871 -7.3391 7.5652 23 6 -2.9801 -8.3280 8.1162 24 6 -4.3073 -8.4378 7.7444 25 6 -4.8419 -7.5584 6.8221 26 6 -4.0501 -6.5643 6.2748 27 17 -4.7230 -5.4542 5.1222 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.9713 -3.2164 -1.9013 31 1 3.0422 -4.9317 -1.4313 32 1 1.3825 -4.5351 -3.1025 33 1 1.7557 -5.6747 0.6907 34 1 0.3132 -4.9200 -0.0291 35 1 1.0071 -3.4755 2.2966 36 1 -1.0886 -3.7970 3.9604 37 1 0.3543 -4.5516 4.6795 38 1 -0.8162 -6.7373 4.7326 39 1 -2.2586 -5.9822 4.0134 40 1 -2.4307 -4.4573 5.9617 41 1 -0.9881 -5.2129 6.6802 42 1 -1.1503 -7.2541 7.8555 43 1 -2.5628 -9.0154 8.8372 44 1 -4.9264 -9.2110 8.1749 45 1 -5.8787 -7.6441 6.5322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717768201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:11 Heat of formation + Delta-G solvation = -99.209667 kcal Electronic energy + Delta-G solvation = -26268.979101 eV Core-core repulsion = 22310.757764 eV Total energy + Delta-G solvation = -3958.221337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79728 -40.30076 -38.63107 -37.36616 -36.43266 -35.88825 -35.13443 -33.19483 -32.24216 -31.59627 -30.12956 -28.22437 -26.30407 -25.57770 -23.62905 -23.56421 -21.81957 -21.62121 -21.00512 -19.41227 -18.17563 -18.15406 -17.65188 -17.24180 -17.08208 -16.51357 -16.35001 -16.15938 -15.60119 -15.39477 -14.97070 -14.89052 -14.77044 -14.70825 -14.47718 -14.29274 -13.97319 -13.66364 -13.19215 -13.07776 -12.89932 -12.70590 -12.66319 -12.63898 -12.37368 -12.34865 -12.20313 -12.19139 -11.85561 -11.72811 -11.57219 -11.52989 -11.04825 -10.79178 -10.71718 -9.95193 -9.82110 -9.57394 -9.00118 -7.89514 -5.18806 0.22385 0.34151 1.23477 1.49935 1.51154 1.60166 1.72924 2.36189 2.58328 2.71500 3.42970 3.61444 3.68935 3.83605 3.85314 3.91058 4.05137 4.07126 4.16425 4.27344 4.41290 4.45325 4.46738 4.54472 4.56642 4.62268 4.68408 4.74779 4.75056 4.91280 4.91502 5.00460 5.06745 5.15343 5.24501 5.33157 5.39127 5.49828 5.54155 5.54453 5.59764 5.92554 6.29182 6.67021 7.06015 7.33614 7.37288 8.09566 8.35183 9.33451 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.002223 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.876713 B =12590.848268 C =13467.963613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.303 1.303 6 H -0.295 1.295 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.722 5.722 10 C 0.161 3.839 11 H 0.081 0.919 12 C 0.063 3.937 13 O -0.585 6.585 14 C 0.130 3.870 15 N -0.714 5.714 16 C 0.504 3.496 17 O -0.592 6.592 18 C -0.133 4.133 19 C -0.087 4.087 20 C -0.080 4.080 21 C -0.085 4.085 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.116 4.116 25 C -0.123 4.123 26 C -0.056 4.056 27 Cl -0.083 7.083 28 H 0.248 0.752 29 H 0.372 0.628 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.385 0.615 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.411 0.589 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.151 0.849 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 -16.623 16.961 23.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.231 1.231 6 H -0.223 1.223 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.052 3.948 11 H 0.099 0.901 12 C -0.017 4.017 13 O -0.391 6.391 14 C 0.005 3.995 15 N -0.365 5.365 16 C 0.293 3.707 17 O -0.474 6.474 18 C -0.173 4.173 19 C -0.125 4.125 20 C -0.117 4.117 21 C -0.086 4.086 22 C -0.130 4.130 23 C -0.133 4.133 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.082 4.082 27 Cl -0.054 7.054 28 H 0.057 0.943 29 H 0.203 0.797 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.233 0.767 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.247 0.753 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.169 0.831 43 H 0.173 0.827 44 H 0.173 0.827 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.661 -17.003 17.112 24.269 hybrid contribution -0.013 1.570 -1.206 1.979 sum -2.673 -15.433 15.906 22.324 Atomic orbital electron populations 1.69856 1.06669 1.25663 1.59548 1.25494 0.96150 1.00859 1.04029 0.85142 0.78424 0.80315 0.76225 1.18752 1.23077 1.22264 1.19650 0.91489 0.84774 1.40621 0.89999 1.42488 1.05346 1.00221 1.88132 1.20851 0.95141 0.85336 0.93460 0.90128 1.22898 0.86502 0.98565 0.93774 1.86529 1.32960 1.92060 1.27590 1.21321 0.98177 0.97010 0.83027 1.46048 1.50940 1.21911 1.17579 1.21325 0.77282 0.83771 0.88370 1.90641 1.58179 1.24622 1.73936 1.21693 1.02585 1.00965 0.92020 1.21152 0.98755 0.97528 0.95090 1.20662 0.99392 0.96114 0.95546 1.19964 0.92287 0.98640 0.97702 1.21381 1.01338 0.94411 0.95828 1.21634 0.93892 0.98044 0.99688 1.21463 0.96247 0.98965 0.96695 1.21310 1.00622 0.94406 0.97802 1.21140 0.94612 0.95726 0.96722 1.98380 1.85362 1.62406 1.59227 0.94334 0.79660 0.94473 0.91696 0.76718 0.90722 0.93702 0.75281 0.88270 0.85894 0.91851 0.93338 0.90652 0.88102 0.83121 0.82696 0.82687 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.95 13.06 21.65 0.28 -57.66 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 3 Si 0.97 44.48 29.55 68.60 2.03 46.51 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.23 -12.03 9.93 84.03 0.83 -11.19 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 9 N -0.72 -34.17 4.51 -322.92 -1.46 -35.63 16 10 C 0.16 5.94 2.84 44.99 0.13 6.07 16 11 H 0.08 2.73 8.08 -2.39 -0.02 2.71 16 12 C 0.06 2.09 6.86 71.98 0.49 2.59 16 13 O -0.58 -20.69 12.64 -148.98 -1.88 -22.57 16 14 C 0.13 4.62 5.12 86.38 0.44 5.07 16 15 N -0.71 -24.19 5.39 -463.06 -2.49 -26.68 16 16 C 0.50 16.91 7.83 87.66 0.69 17.59 16 17 O -0.59 -24.12 15.98 -3.05 -0.05 -24.17 16 18 C -0.13 -3.25 5.70 29.84 0.17 -3.08 16 19 C -0.09 -2.11 4.44 30.59 0.14 -1.97 16 20 C -0.08 -1.51 4.80 29.85 0.14 -1.37 16 21 C -0.09 -1.66 5.14 -19.84 -0.10 -1.76 16 22 C -0.11 -1.67 9.67 22.27 0.22 -1.46 16 23 C -0.11 -1.42 10.05 22.27 0.22 -1.20 16 24 C -0.12 -1.53 10.05 22.27 0.22 -1.30 16 25 C -0.12 -2.15 9.83 22.29 0.22 -1.93 16 26 C -0.06 -1.19 6.31 22.32 0.14 -1.05 16 27 Cl -0.08 -2.00 26.66 -2.72 -0.07 -2.08 16 28 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 29 H 0.37 20.10 7.80 -92.71 -0.72 19.37 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.38 9.58 9.12 -74.06 -0.68 8.91 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.04 1.88 7.39 -2.39 -0.02 1.86 16 35 H 0.41 13.69 8.14 -92.71 -0.75 12.94 16 36 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 39 H 0.05 1.43 7.25 -2.39 -0.02 1.41 16 40 H 0.07 1.51 7.34 -2.39 -0.02 1.49 16 41 H 0.10 1.40 8.01 -2.39 -0.02 1.38 16 42 H 0.15 1.57 8.04 -2.91 -0.02 1.54 16 43 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 44 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -72.43 393.45 -0.35 -72.78 By element: Atomic # 1 Polarization: 49.16 SS G_CDS: -1.13 Total: 48.03 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 4.42 Total: 1.46 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -3.67 Total: -119.97 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -1.93 Total: -46.74 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.07 Total: -2.08 kcal Total: -72.43 -0.35 -72.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717768201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.426 kcal (2) G-P(sol) polarization free energy of solvation -72.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds