Wall clock time and date at job start Tue Mar 31 2020 23:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.87430 * 2 1 4 4 C 1.54323 * 109.88706 * 121.01739 * 2 1 3 5 5 H 1.09007 * 110.86595 * 23.17561 * 4 2 1 6 6 N 1.46891 * 110.72113 * 259.97174 * 4 2 1 7 7 C 1.46897 * 111.00056 * 160.02056 * 6 4 2 8 8 C 1.53002 * 109.47530 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.47665 * 180.02562 * 8 7 6 10 10 F 1.39895 * 109.47239 * 59.99953 * 9 8 7 11 11 F 1.39899 * 109.47456 * 180.02562 * 9 8 7 12 12 F 1.39898 * 109.47000 * 300.00162 * 9 8 7 13 13 C 1.55160 * 102.94127 * 141.60716 * 4 2 1 14 14 C 1.54908 * 101.58344 * 324.49914 * 13 4 2 15 15 N 1.47192 * 109.79218 * 238.80362 * 2 1 3 16 16 C 1.34771 * 125.73645 * 61.63979 * 15 2 1 17 17 O 1.21279 * 120.00012 * 359.89439 * 16 15 2 18 18 C 1.50704 * 119.99929 * 179.88783 * 16 15 2 19 19 S 1.80997 * 109.46955 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99714 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00150 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99850 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00142 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00028 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47377 * 89.99715 * 24 22 20 26 26 H 1.48507 * 109.47122 * 209.99813 * 24 22 20 27 27 H 1.48499 * 109.47072 * 329.99642 * 24 22 20 28 28 H 1.09002 * 109.46642 * 298.98494 * 1 2 3 29 29 H 1.09000 * 109.47097 * 58.97887 * 1 2 3 30 30 H 1.08995 * 109.46978 * 178.98480 * 1 2 3 31 31 H 1.00906 * 111.00250 * 36.06570 * 6 4 2 32 32 H 1.09000 * 109.47199 * 300.00010 * 7 6 4 33 33 H 1.09003 * 109.46887 * 60.00017 * 7 6 4 34 34 H 1.09006 * 109.47306 * 300.00471 * 8 7 6 35 35 H 1.09003 * 109.46971 * 60.00129 * 8 7 6 36 36 H 1.08995 * 110.99972 * 206.42545 * 13 4 2 37 37 H 1.09001 * 111.00142 * 82.57402 * 13 4 2 38 38 H 1.09002 * 110.36632 * 155.84970 * 14 13 4 39 39 H 1.08995 * 110.36781 * 278.06207 * 14 13 4 40 40 H 1.09002 * 109.47343 * 300.00416 * 18 16 15 41 41 H 1.08997 * 109.46696 * 60.00706 * 18 16 15 42 42 H 0.97001 * 120.00121 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3065 -1.4436 1.6230 6 7 2.4567 0.2017 2.2899 7 6 2.5022 -0.4518 3.6047 8 6 2.9241 0.5662 4.6661 9 6 2.9721 -0.1146 6.0354 10 9 3.8966 -1.1639 6.0023 11 9 3.3572 0.8165 7.0060 12 9 1.7056 -0.6187 6.3502 13 6 3.2877 -1.5133 0.6943 14 6 2.8145 -1.8804 -0.7343 15 7 2.0284 -0.7174 -1.1847 16 6 1.8060 -0.3687 -2.4674 17 8 1.1414 0.6133 -2.7224 18 6 2.3832 -1.1989 -3.5849 19 16 1.9123 -0.4783 -5.1770 20 6 2.6966 -1.6151 -6.2712 21 1 3.2577 -2.4478 -5.8735 22 6 2.5941 -1.4399 -7.6443 23 7 1.9106 -0.4247 -8.1290 24 14 3.4249 -2.6455 -8.8043 25 1 2.4863 -3.7504 -9.1254 26 1 3.8098 -1.9436 -10.0552 27 1 4.6393 -3.2007 -8.1546 28 1 -0.3633 0.4980 0.8990 29 1 -0.3633 0.5296 -0.8807 30 1 -0.3633 -1.0275 -0.0182 31 1 1.8439 1.0033 2.3056 32 1 1.5153 -0.8447 3.8496 33 1 3.2227 -1.2694 3.5793 34 1 3.9110 0.9588 4.4211 35 1 2.2039 1.3841 4.6917 36 1 3.4852 -2.4092 1.2827 37 1 4.1654 -0.8679 0.6613 38 1 3.6715 -2.0358 -1.3897 39 1 2.1902 -2.7735 -0.7094 40 1 3.4698 -1.2157 -3.5011 41 1 1.9978 -2.2163 -3.5180 42 1 1.8387 -0.3024 -9.0886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734391486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:25 Heat of formation + Delta-G solvation = -193.828008 kcal Electronic energy + Delta-G solvation = -26884.578292 eV Core-core repulsion = 22382.440962 eV Total energy + Delta-G solvation = -4502.137330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.56909 -48.06868 -48.04457 -40.19928 -37.95701 -36.01283 -32.79615 -32.43452 -31.57666 -30.36416 -28.39329 -26.07800 -25.49128 -24.40159 -23.04324 -22.33653 -20.91641 -19.12547 -19.02544 -18.77192 -17.91287 -17.61127 -16.83638 -16.31884 -16.27404 -15.29900 -15.00299 -14.93825 -14.81245 -14.71690 -14.49429 -14.40433 -14.19147 -14.18304 -13.98721 -13.90243 -13.81945 -13.28073 -12.90843 -12.69243 -12.58077 -12.46138 -12.33745 -12.08054 -11.87261 -11.71211 -11.54020 -11.21798 -11.06895 -11.02478 -10.86767 -10.76123 -9.82155 -9.36870 -9.07189 -9.05349 -8.53623 -8.24085 -6.50832 -6.22240 -3.92870 2.23082 2.81534 3.05741 3.17653 3.21858 3.26390 3.30070 3.45962 3.55638 3.59284 3.90788 4.10455 4.20155 4.32443 4.36173 4.43396 4.77027 4.78794 4.97810 5.03143 5.10086 5.12503 5.13111 5.21675 5.25810 5.34735 5.48061 5.52135 5.59979 5.66345 5.85349 5.88311 5.95709 6.12777 6.17588 6.42587 6.51225 6.75699 7.58925 7.66602 8.34631 8.55647 9.23040 10.85155 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.032755 B = 0.001812 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.626221 B =15450.484322 C =15941.603475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.083 0.917 4 C 0.077 3.923 5 H 0.065 0.935 6 N -0.674 5.674 7 C 0.056 3.944 8 C -0.167 4.167 9 C 0.455 3.545 10 F -0.182 7.182 11 F -0.184 7.184 12 F -0.185 7.185 13 C -0.122 4.122 14 C 0.100 3.900 15 N -0.620 5.620 16 C 0.550 3.450 17 O -0.514 6.514 18 C -0.147 4.147 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.347 0.653 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.090 -1.550 29.333 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.034 3.966 3 H 0.101 0.899 4 C -0.033 4.033 5 H 0.083 0.917 6 N -0.306 5.306 7 C -0.073 4.073 8 C -0.205 4.205 9 C 0.400 3.600 10 F -0.164 7.164 11 F -0.165 7.165 12 F -0.166 7.166 13 C -0.161 4.161 14 C -0.024 4.024 15 N -0.358 5.358 16 C 0.339 3.661 17 O -0.388 6.388 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.166 0.834 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.689 -0.057 28.600 28.650 hybrid contribution 0.389 -2.166 0.053 2.201 sum 2.078 -2.223 28.652 28.814 Atomic orbital electron populations 1.22194 0.94743 1.02438 1.03027 1.21508 0.94242 0.96779 0.84032 0.89896 1.22645 0.96499 0.93514 0.90614 0.91668 1.60439 1.57561 1.09694 1.02901 1.21917 1.01294 0.96148 0.87967 1.22846 1.08164 1.00403 0.89100 1.20516 0.73495 0.77291 0.88698 1.93200 1.66781 1.59577 1.96837 1.93203 1.91144 1.65580 1.66620 1.93195 1.40953 1.88232 1.94262 1.22854 0.98208 1.00347 0.94680 1.22301 0.95716 0.89049 0.95320 1.48519 1.53953 1.28733 1.04608 1.20008 0.79776 0.85022 0.81282 1.90692 1.38596 1.27017 1.82451 1.23512 1.03678 1.02575 0.99960 1.85390 1.69621 1.37794 0.90566 1.22856 1.38247 1.14102 0.93098 0.90936 1.24995 0.95270 0.95991 0.97348 1.70019 1.38549 1.28147 1.13552 0.86166 0.79462 0.80256 0.79606 1.20279 1.20746 1.19687 0.92339 0.90346 0.92499 0.83379 0.93550 0.89352 0.86128 0.87203 0.90215 0.89322 0.90016 0.91466 0.89294 0.89348 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.10 37.16 0.34 -1.52 16 2 C 0.14 1.56 3.00 -66.86 -0.20 1.36 16 3 H 0.08 1.02 7.97 -51.93 -0.41 0.61 16 4 C 0.08 0.61 2.76 -65.88 -0.18 0.42 16 5 H 0.07 0.48 7.61 -51.93 -0.40 0.08 16 6 N -0.67 -4.22 6.30 -104.79 -0.66 -4.88 16 7 C 0.06 0.28 5.30 -3.82 -0.02 0.26 16 8 C -0.17 -0.67 5.52 -26.73 -0.15 -0.82 16 9 C 0.45 2.72 3.16 37.16 0.12 2.84 16 10 F -0.18 -1.31 16.80 2.25 0.04 -1.27 16 11 F -0.18 -1.30 17.32 2.25 0.04 -1.26 16 12 F -0.18 -1.30 16.80 2.25 0.04 -1.27 16 13 C -0.12 -0.97 6.71 -24.58 -0.16 -1.13 16 14 C 0.10 1.03 6.69 -2.53 -0.02 1.01 16 15 N -0.62 -8.64 3.07 -162.89 -0.50 -9.14 16 16 C 0.55 10.42 7.66 -10.99 -0.08 10.33 16 17 O -0.51 -11.58 14.92 5.56 0.08 -11.50 16 18 C -0.15 -2.98 5.16 36.01 0.19 -2.80 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.18 9.50 30.94 0.29 -14.89 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 24 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.15 6.91 -51.93 -0.36 0.79 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.35 1.89 8.45 -39.29 -0.33 1.56 16 32 H 0.05 0.23 7.75 -51.93 -0.40 -0.17 16 33 H 0.09 0.47 7.79 -51.93 -0.40 0.07 16 34 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.84 7.48 -51.93 -0.39 0.45 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.68 7.85 -51.91 -0.41 1.28 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -33.96 372.96 -7.85 -41.81 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.03 Total: -2.26 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 0.02 Total: -2.95 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: -0.43 Total: -39.38 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.11 Total: -3.80 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.96 -7.85 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734391486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.019 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds