Wall clock time and date at job start Tue Mar 31 2020 23:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.87430 * 2 1 4 4 C 1.54323 * 109.88706 * 121.01739 * 2 1 3 5 5 H 1.09007 * 110.86595 * 23.17561 * 4 2 1 6 6 N 1.46891 * 110.72113 * 259.97174 * 4 2 1 7 7 C 1.46897 * 111.00056 * 160.02056 * 6 4 2 8 8 C 1.53002 * 109.47530 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.47665 * 180.02562 * 8 7 6 10 10 F 1.39895 * 109.47239 * 59.99953 * 9 8 7 11 11 F 1.39899 * 109.47456 * 180.02562 * 9 8 7 12 12 F 1.39898 * 109.47000 * 300.00162 * 9 8 7 13 13 C 1.55160 * 102.94127 * 141.60716 * 4 2 1 14 14 C 1.54908 * 101.58344 * 324.49914 * 13 4 2 15 15 N 1.47192 * 109.79218 * 238.80362 * 2 1 3 16 16 C 1.34771 * 125.73645 * 61.63979 * 15 2 1 17 17 O 1.21279 * 120.00012 * 359.89439 * 16 15 2 18 18 C 1.50704 * 119.99929 * 179.88783 * 16 15 2 19 19 S 1.80997 * 109.46955 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99714 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00150 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99850 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00142 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00028 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47377 * 89.99715 * 24 22 20 26 26 H 1.48507 * 109.47122 * 209.99813 * 24 22 20 27 27 H 1.48499 * 109.47072 * 329.99642 * 24 22 20 28 28 H 1.09002 * 109.46642 * 298.98494 * 1 2 3 29 29 H 1.09000 * 109.47097 * 58.97887 * 1 2 3 30 30 H 1.08995 * 109.46978 * 178.98480 * 1 2 3 31 31 H 1.00906 * 111.00250 * 36.06570 * 6 4 2 32 32 H 1.09000 * 109.47199 * 300.00010 * 7 6 4 33 33 H 1.09003 * 109.46887 * 60.00017 * 7 6 4 34 34 H 1.09006 * 109.47306 * 300.00471 * 8 7 6 35 35 H 1.09003 * 109.46971 * 60.00129 * 8 7 6 36 36 H 1.08995 * 110.99972 * 206.42545 * 13 4 2 37 37 H 1.09001 * 111.00142 * 82.57402 * 13 4 2 38 38 H 1.09002 * 110.36632 * 155.84970 * 14 13 4 39 39 H 1.08995 * 110.36781 * 278.06207 * 14 13 4 40 40 H 1.09002 * 109.47343 * 300.00416 * 18 16 15 41 41 H 1.08997 * 109.46696 * 60.00706 * 18 16 15 42 42 H 0.97001 * 120.00121 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3065 -1.4436 1.6230 6 7 2.4567 0.2017 2.2899 7 6 2.5022 -0.4518 3.6047 8 6 2.9241 0.5662 4.6661 9 6 2.9721 -0.1146 6.0354 10 9 3.8966 -1.1639 6.0023 11 9 3.3572 0.8165 7.0060 12 9 1.7056 -0.6187 6.3502 13 6 3.2877 -1.5133 0.6943 14 6 2.8145 -1.8804 -0.7343 15 7 2.0284 -0.7174 -1.1847 16 6 1.8060 -0.3687 -2.4674 17 8 1.1414 0.6133 -2.7224 18 6 2.3832 -1.1989 -3.5849 19 16 1.9123 -0.4783 -5.1770 20 6 2.6966 -1.6151 -6.2712 21 1 3.2577 -2.4478 -5.8735 22 6 2.5941 -1.4399 -7.6443 23 7 1.9106 -0.4247 -8.1290 24 14 3.4249 -2.6455 -8.8043 25 1 2.4863 -3.7504 -9.1254 26 1 3.8098 -1.9436 -10.0552 27 1 4.6393 -3.2007 -8.1546 28 1 -0.3633 0.4980 0.8990 29 1 -0.3633 0.5296 -0.8807 30 1 -0.3633 -1.0275 -0.0182 31 1 1.8439 1.0033 2.3056 32 1 1.5153 -0.8447 3.8496 33 1 3.2227 -1.2694 3.5793 34 1 3.9110 0.9588 4.4211 35 1 2.2039 1.3841 4.6917 36 1 3.4852 -2.4092 1.2827 37 1 4.1654 -0.8679 0.6613 38 1 3.6715 -2.0358 -1.3897 39 1 2.1902 -2.7735 -0.7094 40 1 3.4698 -1.2157 -3.5011 41 1 1.9978 -2.2163 -3.5180 42 1 1.8387 -0.3024 -9.0886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734391486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:24 Heat of formation + Delta-G solvation = -216.804822 kcal Electronic energy + Delta-G solvation = -26885.574642 eV Core-core repulsion = 22382.440962 eV Total energy + Delta-G solvation = -4503.133680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.05840 -48.57108 -48.54366 -41.28473 -39.05908 -36.75096 -34.58946 -33.61878 -32.40658 -31.38113 -29.67402 -27.65940 -26.73261 -25.03692 -23.97713 -22.86513 -21.67330 -20.41491 -19.52498 -19.48994 -19.28688 -18.40068 -17.96313 -17.43627 -16.88477 -16.82405 -16.47982 -16.03623 -15.71114 -15.52920 -15.37568 -15.06912 -14.96257 -14.82794 -14.70634 -14.68556 -14.60539 -14.48090 -14.06371 -14.03070 -13.68028 -13.23865 -13.16139 -13.05926 -12.89621 -12.88893 -12.66540 -12.52776 -12.48162 -12.23797 -11.90098 -11.74457 -11.63753 -11.14525 -10.87183 -10.28548 -9.71252 -9.52169 -8.67984 -8.34961 -6.13459 1.23414 1.42508 1.44454 1.55761 1.58656 1.79918 2.06595 2.27086 2.72696 2.99087 3.03753 3.13944 3.20849 3.39534 3.41694 3.61984 3.87180 3.97975 4.01597 4.08164 4.21778 4.28013 4.33823 4.41080 4.45537 4.48071 4.56052 4.66884 4.74990 4.80441 4.88503 4.99557 5.03353 5.22036 5.24548 5.41312 5.45015 5.91832 6.19415 6.28843 6.42277 7.06114 7.14331 8.74254 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.032755 B = 0.001812 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.626221 B =15450.484322 C =15941.603475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 H 0.070 0.930 4 C 0.092 3.908 5 H 0.081 0.919 6 N -0.677 5.677 7 C 0.058 3.942 8 C -0.158 4.158 9 C 0.454 3.546 10 F -0.190 7.190 11 F -0.192 7.192 12 F -0.192 7.192 13 C -0.113 4.113 14 C 0.088 3.912 15 N -0.612 5.612 16 C 0.547 3.453 17 O -0.562 6.562 18 C -0.120 4.120 19 S -0.150 6.150 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.258 1.258 28 H 0.088 0.912 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.353 0.647 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.304 -3.515 31.223 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.088 0.912 4 C -0.019 4.019 5 H 0.098 0.902 6 N -0.309 5.309 7 C -0.071 4.071 8 C -0.196 4.196 9 C 0.399 3.601 10 F -0.172 7.172 11 F -0.173 7.173 12 F -0.173 7.173 13 C -0.151 4.151 14 C -0.034 4.034 15 N -0.347 5.347 16 C 0.335 3.665 17 O -0.440 6.440 18 C -0.271 4.271 19 S 0.077 5.923 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.181 1.181 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.173 0.827 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.921 -2.048 30.557 30.764 hybrid contribution 0.007 -1.549 -0.355 1.589 sum 2.928 -3.596 30.201 30.555 Atomic orbital electron populations 1.22125 0.94704 1.02392 1.02583 1.21719 0.94330 0.96560 0.84449 0.91174 1.22499 0.96641 0.93370 0.89348 0.90173 1.60405 1.57747 1.09629 1.03145 1.21913 1.01626 0.96256 0.87292 1.22811 1.09049 1.00314 0.87422 1.20794 0.72969 0.77002 0.89306 1.93184 1.67076 1.60042 1.96886 1.93187 1.91204 1.65812 1.67137 1.93181 1.41393 1.88359 1.94403 1.22839 0.97704 1.01392 0.93157 1.22665 0.95667 0.88178 0.96867 1.48463 1.53032 1.29604 1.03645 1.19717 0.79651 0.84383 0.82716 1.90674 1.40897 1.28960 1.83508 1.23310 1.04593 1.02840 0.96384 1.85568 1.70812 1.40119 0.95775 1.23188 1.38275 1.14197 0.93675 0.89934 1.26145 0.95785 0.97974 0.99305 1.70186 1.40158 1.30341 1.14060 0.84942 0.78660 0.77479 0.76830 1.19273 1.20294 1.18138 0.89300 0.94399 0.92121 0.82718 0.93069 0.89329 0.85504 0.85673 0.87384 0.89938 0.89898 0.89711 0.87716 0.87688 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 9.10 71.98 0.65 -2.80 16 2 C 0.13 2.82 3.00 45.31 0.14 2.95 16 3 H 0.07 1.69 7.97 -2.39 -0.02 1.67 16 4 C 0.09 1.15 2.76 46.11 0.13 1.28 16 5 H 0.08 0.84 7.61 -2.38 -0.02 0.82 16 6 N -0.68 -6.43 6.30 -485.46 -3.06 -9.48 16 7 C 0.06 0.39 5.30 86.30 0.46 0.85 16 8 C -0.16 -0.85 5.52 30.59 0.17 -0.68 16 9 C 0.45 4.56 3.16 71.98 0.23 4.78 16 10 F -0.19 -2.38 16.80 44.97 0.76 -1.63 16 11 F -0.19 -2.44 17.32 44.97 0.78 -1.66 16 12 F -0.19 -2.35 16.80 44.97 0.76 -1.59 16 13 C -0.11 -1.40 6.71 31.99 0.21 -1.18 16 14 C 0.09 1.59 6.69 86.85 0.58 2.17 16 15 N -0.61 -16.44 3.07 -787.67 -2.42 -18.86 16 16 C 0.55 20.99 7.66 87.66 0.67 21.66 16 17 O -0.56 -26.53 14.92 -3.03 -0.05 -26.58 16 18 C -0.12 -4.90 5.16 71.24 0.37 -4.53 16 19 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 20 C -0.55 -31.27 9.50 67.95 0.65 -30.62 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.72 5.49 84.86 0.47 1.19 16 23 N -0.91 -56.12 13.22 21.65 0.29 -55.84 16 24 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.14 6.91 -2.39 -0.02 1.12 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.35 2.86 8.45 -89.69 -0.76 2.10 16 32 H 0.05 0.33 7.75 -2.39 -0.02 0.31 16 33 H 0.09 0.63 7.79 -2.39 -0.02 0.62 16 34 H 0.13 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.50 7.48 -2.39 -0.02 1.48 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 3.90 7.85 -2.39 -0.02 3.88 16 41 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -77.27 372.96 2.93 -74.34 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.29 Total: 10.22 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 4.72 Total: -4.93 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -5.19 Total: -84.18 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.05 Total: -26.58 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 2.29 Total: -4.88 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -77.27 2.93 -74.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734391486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.463 kcal (2) G-P(sol) polarization free energy of solvation -77.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds