Wall clock time and date at job start Tue Mar 31 2020 23:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.87305 * 2 1 4 4 C 1.54324 * 109.88258 * 238.82342 * 2 1 3 5 5 H 1.09002 * 110.72090 * 336.75483 * 4 2 1 6 6 N 1.46894 * 110.72232 * 99.85167 * 4 2 1 7 7 C 1.46896 * 111.00230 * 205.00179 * 6 4 2 8 8 C 1.53004 * 109.47307 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.47115 * 179.97438 * 8 7 6 10 10 F 1.39895 * 109.47293 * 59.99710 * 9 8 7 11 11 F 1.39901 * 109.47180 * 179.97438 * 9 8 7 12 12 F 1.39903 * 109.47155 * 299.99736 * 9 8 7 13 13 C 1.55155 * 102.93924 * 218.39233 * 4 2 1 14 14 C 1.54689 * 101.67730 * 35.33807 * 13 4 2 15 15 N 1.47017 * 109.87719 * 121.01473 * 2 1 3 16 16 C 1.34775 * 125.64996 * 298.31670 * 15 2 1 17 17 O 1.21284 * 120.00295 * 0.02562 * 16 15 2 18 18 C 1.50708 * 119.99957 * 179.97438 * 16 15 2 19 19 S 1.80998 * 109.47052 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00013 * 180.02562 * 19 18 16 21 21 H 1.07991 * 119.99794 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99771 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00311 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99653 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48508 * 109.47016 * 299.99635 * 24 22 20 27 27 H 1.48495 * 109.47483 * 59.99992 * 24 22 20 28 28 H 1.09000 * 109.47238 * 300.44526 * 1 2 3 29 29 H 1.09000 * 109.46862 * 60.43938 * 1 2 3 30 30 H 1.08999 * 109.47336 * 180.43607 * 1 2 3 31 31 H 1.00902 * 110.99798 * 328.95190 * 6 4 2 32 32 H 1.09001 * 109.46739 * 299.99909 * 7 6 4 33 33 H 1.09002 * 109.47385 * 59.99727 * 7 6 4 34 34 H 1.09001 * 109.47033 * 299.99590 * 8 7 6 35 35 H 1.09002 * 109.47234 * 59.99496 * 8 7 6 36 36 H 1.09001 * 111.00292 * 153.57485 * 13 4 2 37 37 H 1.09002 * 111.00365 * 277.42439 * 13 4 2 38 38 H 1.09002 * 110.38906 * 204.36355 * 14 13 4 39 39 H 1.08994 * 110.24141 * 82.11486 * 14 13 4 40 40 H 1.09005 * 109.46512 * 60.00633 * 18 16 15 41 41 H 1.08991 * 109.47135 * 300.00153 * 18 16 15 42 42 H 0.97001 * 119.99662 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7513 -1.2417 5 1 1.3052 -1.4482 -1.6162 6 7 2.4528 0.1952 -2.2922 7 6 2.3829 -0.4311 -3.6191 8 6 2.8041 0.5830 -4.6846 9 6 2.7319 -0.0696 -6.0666 10 9 1.4213 -0.4906 -6.3156 11 9 3.1165 0.8578 -7.0409 12 9 3.5916 -1.1726 -6.1069 13 6 3.2876 -1.5152 -0.6902 14 6 2.8190 -1.8753 0.7394 15 7 2.0299 -0.7124 1.1849 16 6 1.8085 -0.3577 2.4662 17 8 1.1452 0.6261 2.7171 18 6 2.3841 -1.1844 3.5871 19 16 1.9138 -0.4568 5.1763 20 6 2.6973 -1.5896 6.2753 21 1 3.2579 -2.4242 5.8810 22 6 2.5941 -1.4091 7.6476 23 7 1.9104 -0.3920 8.1281 24 14 3.4253 -2.6095 8.8126 25 1 3.1651 -2.1984 10.2156 26 1 2.8823 -3.9735 8.5883 27 1 4.8887 -2.6116 8.5601 28 1 -0.3634 0.5207 0.8860 29 1 -0.3633 0.5070 -0.8939 30 1 -0.3634 -1.0276 0.0078 31 1 1.8898 1.0318 -2.2572 32 1 3.0528 -1.2904 -3.6509 33 1 1.3616 -0.7592 -3.8128 34 1 2.1345 1.4425 -4.6529 35 1 3.8254 0.9107 -4.4908 36 1 3.4852 -2.4129 -1.2761 37 1 4.1655 -0.8698 -0.6591 38 1 3.6776 -2.0245 1.3942 39 1 2.1971 -2.7701 0.7182 40 1 3.4708 -1.2036 3.5033 41 1 1.9967 -2.2012 3.5246 42 1 1.4791 0.2316 7.5231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734391487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:28 Heat of formation + Delta-G solvation = -199.128468 kcal Electronic energy + Delta-G solvation = -26916.931015 eV Core-core repulsion = 22414.563839 eV Total energy + Delta-G solvation = -4502.367175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.58886 -48.08839 -48.06477 -40.29770 -38.03966 -36.08020 -32.85658 -32.54118 -31.64495 -30.45590 -28.51755 -26.12610 -24.87105 -24.43033 -23.07365 -22.39854 -20.99409 -19.20038 -19.04857 -18.82442 -18.19441 -17.89444 -16.90785 -16.49281 -16.32079 -15.38156 -15.07577 -15.04969 -14.87452 -14.53483 -14.44859 -14.26360 -14.21435 -14.19378 -14.01014 -13.87792 -13.84324 -13.33342 -13.01805 -12.72653 -12.57559 -12.39834 -12.37166 -12.13488 -12.07203 -11.85121 -11.73426 -11.57767 -11.27757 -10.94146 -10.91998 -10.18349 -9.59041 -9.49241 -9.08536 -9.02648 -8.62274 -8.23819 -6.68833 -6.63360 -4.01403 2.20658 2.70599 2.94082 3.14344 3.31932 3.36997 3.41497 3.45833 3.53497 3.57069 3.86698 4.04207 4.23971 4.28284 4.32782 4.40305 4.72107 4.75344 4.88728 4.97860 5.03114 5.08881 5.15564 5.20356 5.21237 5.29141 5.39251 5.42721 5.50493 5.59934 5.74806 5.81061 5.88553 5.99585 6.10477 6.36382 6.44997 6.71461 7.56143 7.90474 8.43915 8.48796 9.25780 10.80495 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.033875 B = 0.001809 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.367065 B =15472.776574 C =15945.399616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.137 3.863 3 H 0.083 0.917 4 C 0.078 3.922 5 H 0.068 0.932 6 N -0.674 5.674 7 C 0.056 3.944 8 C -0.167 4.167 9 C 0.455 3.545 10 F -0.185 7.185 11 F -0.184 7.184 12 F -0.182 7.182 13 C -0.122 4.122 14 C 0.099 3.901 15 N -0.619 5.619 16 C 0.549 3.451 17 O -0.514 6.514 18 C -0.124 4.124 19 S -0.116 6.116 20 C -0.607 4.607 21 H 0.065 0.935 22 C 0.035 3.965 23 N -0.883 5.883 24 Si 1.084 2.916 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.347 0.653 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.122 -1.855 -30.010 30.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.032 3.968 3 H 0.100 0.900 4 C -0.032 4.032 5 H 0.086 0.914 6 N -0.306 5.306 7 C -0.073 4.073 8 C -0.205 4.205 9 C 0.400 3.600 10 F -0.166 7.166 11 F -0.165 7.165 12 F -0.164 7.164 13 C -0.160 4.160 14 C -0.025 4.025 15 N -0.357 5.357 16 C 0.338 3.662 17 O -0.388 6.388 18 C -0.275 4.275 19 S 0.110 5.890 20 C -0.755 4.755 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.518 5.518 24 Si 0.910 3.090 25 H -0.203 1.203 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.167 0.833 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.015 -0.817 -27.888 27.973 hybrid contribution -0.301 -1.166 -2.404 2.689 sum 1.714 -1.983 -30.293 30.406 Atomic orbital electron populations 1.22196 0.94679 1.02446 1.03102 1.21542 0.94324 0.96775 0.84121 0.89954 1.22647 0.96505 0.93646 0.90429 0.91441 1.60443 1.60321 1.08043 1.01768 1.21934 1.00975 0.96602 0.87831 1.22845 1.08159 1.00698 0.88815 1.20512 0.73513 0.76992 0.88977 1.93195 1.37284 1.90743 1.95406 1.93204 1.91088 1.65837 1.66401 1.93202 1.70602 1.55595 1.96998 1.22811 0.98241 1.00475 0.94490 1.22291 0.95671 0.89007 0.95497 1.48446 1.53744 1.28901 1.04566 1.19983 0.79830 0.85012 0.81422 1.90694 1.38678 1.26856 1.82606 1.23294 1.03759 1.02386 0.98090 1.84812 1.70754 1.39533 0.93873 1.23688 1.41393 1.15358 0.95068 0.91623 1.26060 0.96086 0.99428 0.95972 1.70803 1.29211 1.12839 1.38899 0.83331 0.75626 0.74380 0.75673 1.20270 1.21140 1.21115 0.90391 0.92246 0.92457 0.83344 0.89347 0.93509 0.87194 0.86125 0.90081 0.89343 0.89991 0.91391 0.89030 0.89075 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.10 37.16 0.34 -1.50 16 2 C 0.14 1.51 2.96 -66.95 -0.20 1.32 16 3 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 4 C 0.08 0.60 2.81 -65.88 -0.18 0.41 16 5 H 0.07 0.49 7.53 -51.93 -0.39 0.09 16 6 N -0.67 -4.14 6.35 -104.79 -0.67 -4.81 16 7 C 0.06 0.27 5.31 -3.82 -0.02 0.25 16 8 C -0.17 -0.66 5.52 -26.73 -0.15 -0.81 16 9 C 0.45 2.69 3.16 37.16 0.12 2.80 16 10 F -0.18 -1.29 16.80 2.25 0.04 -1.25 16 11 F -0.18 -1.29 17.32 2.25 0.04 -1.25 16 12 F -0.18 -1.29 16.80 2.25 0.04 -1.25 16 13 C -0.12 -0.95 6.76 -24.70 -0.17 -1.11 16 14 C 0.10 1.01 6.68 -2.65 -0.02 0.99 16 15 N -0.62 -8.52 3.07 -163.15 -0.50 -9.02 16 16 C 0.55 10.32 7.66 -10.98 -0.08 10.23 16 17 O -0.51 -11.49 14.90 5.55 0.08 -11.41 16 18 C -0.12 -2.53 5.17 36.01 0.19 -2.35 16 19 S -0.12 -3.13 19.60 -107.50 -2.11 -5.23 16 20 C -0.61 -17.46 9.50 30.94 0.29 -17.16 16 21 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16 22 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 23 N -0.88 -27.46 13.67 55.49 0.76 -26.70 16 24 Si 1.08 24.84 29.92 -169.99 -5.09 19.75 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.08 1.13 6.88 -51.93 -0.36 0.77 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.35 1.88 8.32 -39.29 -0.33 1.55 16 32 H 0.09 0.46 7.80 -51.93 -0.41 0.06 16 33 H 0.05 0.23 7.74 -51.93 -0.40 -0.17 16 34 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.83 7.48 -51.93 -0.39 0.45 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.75 7.84 -51.91 -0.41 1.34 16 41 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 42 H 0.28 8.82 7.12 -40.82 -0.29 8.52 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -34.64 371.42 -7.75 -42.39 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.97 Total: -0.82 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 0.02 Total: -6.00 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -0.41 Total: -40.53 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.11 Total: -3.76 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.09 Total: 19.75 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.64 -7.75 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734391487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.738 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds