Wall clock time and date at job start Tue Mar 31 2020 23:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.87305 * 2 1 4 4 C 1.54324 * 109.88258 * 238.82342 * 2 1 3 5 5 H 1.09002 * 110.72090 * 336.75483 * 4 2 1 6 6 N 1.46894 * 110.72232 * 99.85167 * 4 2 1 7 7 C 1.46896 * 111.00230 * 205.00179 * 6 4 2 8 8 C 1.53004 * 109.47307 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.47115 * 179.97438 * 8 7 6 10 10 F 1.39895 * 109.47293 * 59.99710 * 9 8 7 11 11 F 1.39901 * 109.47180 * 179.97438 * 9 8 7 12 12 F 1.39903 * 109.47155 * 299.99736 * 9 8 7 13 13 C 1.55155 * 102.93924 * 218.39233 * 4 2 1 14 14 C 1.54689 * 101.67730 * 35.33807 * 13 4 2 15 15 N 1.47017 * 109.87719 * 121.01473 * 2 1 3 16 16 C 1.34775 * 125.64996 * 298.31670 * 15 2 1 17 17 O 1.21284 * 120.00295 * 0.02562 * 16 15 2 18 18 C 1.50708 * 119.99957 * 179.97438 * 16 15 2 19 19 S 1.80998 * 109.47052 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00013 * 180.02562 * 19 18 16 21 21 H 1.07991 * 119.99794 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99771 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00311 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99653 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48508 * 109.47016 * 299.99635 * 24 22 20 27 27 H 1.48495 * 109.47483 * 59.99992 * 24 22 20 28 28 H 1.09000 * 109.47238 * 300.44526 * 1 2 3 29 29 H 1.09000 * 109.46862 * 60.43938 * 1 2 3 30 30 H 1.08999 * 109.47336 * 180.43607 * 1 2 3 31 31 H 1.00902 * 110.99798 * 328.95190 * 6 4 2 32 32 H 1.09001 * 109.46739 * 299.99909 * 7 6 4 33 33 H 1.09002 * 109.47385 * 59.99727 * 7 6 4 34 34 H 1.09001 * 109.47033 * 299.99590 * 8 7 6 35 35 H 1.09002 * 109.47234 * 59.99496 * 8 7 6 36 36 H 1.09001 * 111.00292 * 153.57485 * 13 4 2 37 37 H 1.09002 * 111.00365 * 277.42439 * 13 4 2 38 38 H 1.09002 * 110.38906 * 204.36355 * 14 13 4 39 39 H 1.08994 * 110.24141 * 82.11486 * 14 13 4 40 40 H 1.09005 * 109.46512 * 60.00633 * 18 16 15 41 41 H 1.08991 * 109.47135 * 300.00153 * 18 16 15 42 42 H 0.97001 * 119.99662 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7513 -1.2417 5 1 1.3052 -1.4482 -1.6162 6 7 2.4528 0.1952 -2.2922 7 6 2.3829 -0.4311 -3.6191 8 6 2.8041 0.5830 -4.6846 9 6 2.7319 -0.0696 -6.0666 10 9 1.4213 -0.4906 -6.3156 11 9 3.1165 0.8578 -7.0409 12 9 3.5916 -1.1726 -6.1069 13 6 3.2876 -1.5152 -0.6902 14 6 2.8190 -1.8753 0.7394 15 7 2.0299 -0.7124 1.1849 16 6 1.8085 -0.3577 2.4662 17 8 1.1452 0.6261 2.7171 18 6 2.3841 -1.1844 3.5871 19 16 1.9138 -0.4568 5.1763 20 6 2.6973 -1.5896 6.2753 21 1 3.2579 -2.4242 5.8810 22 6 2.5941 -1.4091 7.6476 23 7 1.9104 -0.3920 8.1281 24 14 3.4253 -2.6095 8.8126 25 1 3.1651 -2.1984 10.2156 26 1 2.8823 -3.9735 8.5883 27 1 4.8887 -2.6116 8.5601 28 1 -0.3634 0.5207 0.8860 29 1 -0.3633 0.5070 -0.8939 30 1 -0.3634 -1.0276 0.0078 31 1 1.8898 1.0318 -2.2572 32 1 3.0528 -1.2904 -3.6509 33 1 1.3616 -0.7592 -3.8128 34 1 2.1345 1.4425 -4.6529 35 1 3.8254 0.9107 -4.4908 36 1 3.4852 -2.4129 -1.2761 37 1 4.1655 -0.8698 -0.6591 38 1 3.6776 -2.0245 1.3942 39 1 2.1971 -2.7701 0.7182 40 1 3.4708 -1.2036 3.5033 41 1 1.9967 -2.2012 3.5246 42 1 1.4791 0.2316 7.5231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734391487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:27 Heat of formation + Delta-G solvation = -222.700772 kcal Electronic energy + Delta-G solvation = -26917.953187 eV Core-core repulsion = 22414.563839 eV Total energy + Delta-G solvation = -4503.389347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.07234 -48.58526 -48.55795 -41.38054 -39.13475 -36.80191 -34.75485 -33.67959 -32.46512 -31.47357 -29.77577 -27.08327 -26.77508 -25.05794 -24.02141 -22.89925 -21.74385 -20.68782 -19.92000 -19.52322 -19.34304 -18.44269 -18.04037 -17.59572 -16.93390 -16.74855 -16.30626 -15.78898 -15.71818 -15.59041 -15.42064 -15.08984 -14.97623 -14.88496 -14.73934 -14.70468 -14.63713 -14.60778 -14.19792 -14.06236 -13.84521 -13.75053 -13.30064 -13.10593 -12.92409 -12.73717 -12.61706 -12.51171 -12.27685 -11.95567 -11.94844 -11.71442 -11.55135 -11.09985 -10.98423 -10.33822 -9.78930 -9.54642 -8.93133 -8.88715 -6.28655 1.13164 1.47583 1.51485 1.60736 1.77111 1.81001 1.97366 2.33649 2.70411 3.01756 3.01965 3.06769 3.12399 3.30423 3.37300 3.57716 3.75708 3.95093 3.97127 4.04906 4.09581 4.21481 4.28551 4.31009 4.38438 4.45950 4.51221 4.62168 4.69611 4.78032 4.85567 4.95374 4.99956 5.16630 5.21251 5.38316 5.63353 5.88744 6.13958 6.24162 6.34237 7.03386 7.05909 8.50182 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.033875 B = 0.001809 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.367065 B =15472.776574 C =15945.399616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.070 0.930 4 C 0.092 3.908 5 H 0.083 0.917 6 N -0.676 5.676 7 C 0.058 3.942 8 C -0.158 4.158 9 C 0.454 3.546 10 F -0.192 7.192 11 F -0.192 7.192 12 F -0.190 7.190 13 C -0.112 4.112 14 C 0.087 3.913 15 N -0.610 5.610 16 C 0.546 3.454 17 O -0.562 6.562 18 C -0.100 4.100 19 S -0.194 6.194 20 C -0.613 4.613 21 H 0.075 0.925 22 C -0.020 4.020 23 N -0.912 5.912 24 Si 1.137 2.863 25 H -0.280 1.280 26 H -0.263 1.263 27 H -0.262 1.262 28 H 0.036 0.964 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.353 0.647 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 -3.842 -32.131 32.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.088 0.912 4 C -0.018 4.018 5 H 0.100 0.900 6 N -0.308 5.308 7 C -0.071 4.071 8 C -0.196 4.196 9 C 0.399 3.601 10 F -0.173 7.173 11 F -0.173 7.173 12 F -0.172 7.172 13 C -0.150 4.150 14 C -0.035 4.035 15 N -0.345 5.345 16 C 0.334 3.666 17 O -0.440 6.440 18 C -0.252 4.252 19 S 0.033 5.967 20 C -0.760 4.760 21 H 0.093 0.907 22 C -0.223 4.223 23 N -0.548 5.548 24 Si 0.954 3.046 25 H -0.205 1.205 26 H -0.187 1.187 27 H -0.187 1.187 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.173 0.827 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.282 -2.826 -30.095 30.405 hybrid contribution -0.692 -0.548 -1.943 2.134 sum 2.591 -3.373 -32.038 32.319 Atomic orbital electron populations 1.22129 0.94653 1.02458 1.02590 1.21764 0.94398 0.96599 0.84493 0.91152 1.22510 0.96647 0.93500 0.89162 0.89963 1.60417 1.60457 1.07986 1.01975 1.21933 1.01314 0.96729 0.87144 1.22811 1.09013 1.00684 0.87090 1.20794 0.72981 0.76683 0.89615 1.93181 1.37798 1.90841 1.95527 1.93189 1.91142 1.66071 1.66929 1.93186 1.70836 1.56091 1.97062 1.22799 0.97739 1.01526 0.92959 1.22658 0.95613 0.88145 0.97047 1.48402 1.52796 1.29736 1.03573 1.19664 0.79734 0.84376 0.82819 1.90678 1.40960 1.28769 1.83627 1.23160 1.04690 1.02658 0.94664 1.85048 1.71656 1.41347 0.98697 1.24018 1.40970 1.15418 0.95643 0.90667 1.27860 0.95768 1.00207 0.98440 1.70923 1.31142 1.14067 1.38627 0.82721 0.75842 0.72894 0.73139 1.20549 1.18737 1.18723 0.94442 0.89260 0.92044 0.82736 0.89275 0.93077 0.85706 0.85455 0.87263 0.89950 0.89877 0.89629 0.87489 0.87496 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 9.10 71.98 0.66 -2.74 16 2 C 0.13 2.71 2.96 45.34 0.13 2.84 16 3 H 0.07 1.65 7.91 -2.39 -0.02 1.63 16 4 C 0.09 1.12 2.81 46.10 0.13 1.25 16 5 H 0.08 0.83 7.53 -2.39 -0.02 0.81 16 6 N -0.68 -6.20 6.35 -485.46 -3.08 -9.28 16 7 C 0.06 0.38 5.31 86.31 0.46 0.84 16 8 C -0.16 -0.82 5.52 30.60 0.17 -0.65 16 9 C 0.45 4.48 3.16 71.98 0.23 4.71 16 10 F -0.19 -2.33 16.80 44.97 0.76 -1.58 16 11 F -0.19 -2.41 17.32 44.97 0.78 -1.63 16 12 F -0.19 -2.34 16.80 44.97 0.76 -1.58 16 13 C -0.11 -1.34 6.76 31.91 0.22 -1.13 16 14 C 0.09 1.53 6.68 86.78 0.58 2.11 16 15 N -0.61 -16.07 3.07 -788.48 -2.42 -18.49 16 16 C 0.55 20.68 7.66 87.66 0.67 21.35 16 17 O -0.56 -26.16 14.90 -3.04 -0.05 -26.21 16 18 C -0.10 -4.07 5.17 71.24 0.37 -3.70 16 19 S -0.19 -10.80 19.60 -56.49 -1.11 -11.91 16 20 C -0.61 -35.45 9.50 67.95 0.65 -34.80 16 21 H 0.08 4.06 7.80 -2.92 -0.02 4.04 16 22 C -0.02 -1.14 5.49 84.86 0.47 -0.68 16 23 N -0.91 -58.18 13.67 21.65 0.30 -57.88 16 24 Si 1.14 49.15 29.92 68.60 2.05 51.20 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 27 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 28 H 0.04 1.11 6.88 -2.39 -0.02 1.09 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.35 2.81 8.32 -89.69 -0.75 2.07 16 32 H 0.09 0.61 7.80 -2.39 -0.02 0.59 16 33 H 0.05 0.32 7.74 -2.39 -0.02 0.30 16 34 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.47 7.48 -2.39 -0.02 1.45 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.11 3.98 7.84 -2.39 -0.02 3.96 16 41 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 42 H 0.26 17.27 7.12 -92.71 -0.66 16.61 16 Total: -1.00 -78.78 371.42 3.11 -75.67 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.41 Total: 12.28 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.72 Total: -10.59 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -5.20 Total: -85.66 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.05 Total: -26.21 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 2.29 Total: -4.79 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.05 Total: 51.20 kcal Atomic # 16 Polarization: -10.80 SS G_CDS: -1.11 Total: -11.91 kcal Total: -78.78 3.11 -75.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734391487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.033 kcal (2) G-P(sol) polarization free energy of solvation -78.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds