Wall clock time and date at job start Tue Mar 31 2020 23:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47522 * 300.00351 * 3 2 1 6 6 H 1.48500 * 109.47073 * 60.00717 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.47423 * 125.65041 * 179.97438 * 13 11 10 15 15 C 1.55132 * 104.72496 * 155.81864 * 14 13 11 16 16 H 1.08997 * 110.93677 * 155.29145 * 15 14 13 17 17 N 1.46493 * 111.19224 * 279.19270 * 15 14 13 18 18 C 1.34776 * 120.00313 * 267.18655 * 17 15 14 19 19 O 1.21277 * 119.99860 * 359.97438 * 18 17 15 20 20 C 1.50701 * 120.00123 * 180.02562 * 18 17 15 21 21 H 1.09002 * 115.55089 * 34.27563 * 20 18 17 22 22 C 1.52998 * 117.49837 * 248.60557 * 20 18 17 23 23 C 1.52992 * 117.49743 * 179.97438 * 20 18 17 24 24 C 1.52992 * 138.59295 * 336.60034 * 23 20 18 25 25 C 1.52996 * 138.59198 * 238.37469 * 23 20 18 26 26 C 1.55156 * 101.48009 * 37.29813 * 15 14 13 27 27 H 1.09001 * 110.72046 * 82.70277 * 26 15 14 28 28 O 1.42906 * 110.86738 * 205.89438 * 26 15 14 29 29 C 1.47023 * 125.65037 * 0.30479 * 13 11 10 30 30 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 32 32 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 33 33 H 1.09004 * 110.36778 * 274.75408 * 14 13 11 34 34 H 1.09006 * 110.36423 * 37.07061 * 14 13 11 35 35 H 0.97006 * 119.99727 * 87.18929 * 17 15 14 36 36 H 1.09007 * 117.49857 * 0.02562 * 22 20 18 37 37 H 1.09003 * 117.49744 * 145.01794 * 22 20 18 38 38 H 1.09002 * 117.49278 * 336.59539 * 24 23 20 39 39 H 1.09003 * 117.50122 * 121.61147 * 24 23 20 40 40 H 1.08992 * 117.49992 * 238.39155 * 25 23 20 41 41 H 1.08998 * 117.49157 * 23.39062 * 25 23 20 42 42 H 0.96701 * 113.99572 * 175.06367 * 28 26 15 43 43 H 1.08997 * 109.88157 * 300.44099 * 29 13 11 44 44 H 1.09005 * 109.88313 * 61.44869 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 2.4657 -7.7678 -0.0083 15 6 3.6837 -8.4994 -0.6312 16 1 3.7239 -9.5379 -0.3028 17 7 3.6613 -8.4145 -2.0935 18 6 3.0819 -9.3932 -2.8166 19 8 2.5795 -10.3444 -2.2568 20 6 3.0595 -9.3060 -4.3210 21 1 3.9323 -8.8396 -4.7780 22 6 1.7045 -9.0824 -4.9955 23 6 2.3875 -10.4487 -5.0847 24 6 2.0377 -11.9226 -4.8704 25 6 2.7482 -11.4836 -6.1524 26 6 4.8665 -7.6844 -0.0447 27 1 5.1105 -8.0278 0.9606 28 8 6.0115 -7.7644 -0.8961 29 6 4.3112 -6.2450 -0.0100 30 1 -0.4851 0.8400 0.0004 31 1 3.1252 -3.7316 0.8875 32 1 3.1238 -3.7309 -0.8925 33 1 2.2925 -8.1143 1.0106 34 1 1.5767 -7.9242 -0.6193 35 1 4.0636 -7.6538 -2.5413 36 1 0.8294 -8.9978 -4.3511 37 1 1.6860 -8.4691 -5.8964 38 1 2.6218 -12.4767 -4.1357 39 1 0.9885 -12.2074 -4.9488 40 1 2.1665 -11.4795 -7.0740 41 1 3.7998 -11.7486 -6.2612 42 1 6.7521 -7.2113 -0.6121 43 1 4.6451 -5.6976 -0.8914 44 1 4.6498 -5.7361 0.8925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735965179.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:36 Heat of formation + Delta-G solvation = -49.407013 kcal Electronic energy + Delta-G solvation = -26887.035925 eV Core-core repulsion = 22933.017900 eV Total energy + Delta-G solvation = -3954.018026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72773 -39.64707 -38.19638 -37.44239 -35.73148 -34.10559 -32.86983 -32.47236 -30.73334 -29.01937 -28.18534 -25.55291 -24.69029 -23.40279 -22.64142 -21.35944 -20.66261 -19.60529 -19.32532 -17.85714 -17.83762 -17.36986 -16.72561 -16.49494 -15.77328 -15.43745 -15.24959 -14.88624 -14.84491 -14.83141 -14.61909 -14.30438 -13.92197 -13.46824 -13.38473 -12.91330 -12.81189 -12.59777 -12.51420 -12.18877 -11.93132 -11.88157 -11.73129 -11.39219 -11.10838 -11.06578 -10.80276 -10.68606 -10.48151 -10.39171 -10.25709 -9.91316 -9.85787 -9.53199 -9.34312 -9.11658 -8.59053 -8.28265 -6.55448 -6.25974 -3.97170 2.29983 2.72447 2.78105 2.97394 3.18136 3.20909 3.27221 3.45125 3.47225 3.54826 3.66901 4.00702 4.07275 4.13870 4.17879 4.49775 4.53941 4.65988 4.79864 4.92396 4.96285 5.09240 5.13504 5.16730 5.27553 5.31252 5.35535 5.39528 5.43384 5.46361 5.51724 5.52163 5.68233 5.70290 5.72861 5.82229 5.91743 6.04997 6.20113 6.27348 7.10616 7.31662 7.51926 7.55512 8.05802 8.30754 8.45814 9.19294 10.81478 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014581 B = 0.002432 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.870673 B =11510.212966 C =12290.207698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.510 6.510 13 N -0.623 5.623 14 C 0.096 3.904 15 C 0.143 3.857 16 H 0.115 0.885 17 N -0.703 5.703 18 C 0.546 3.454 19 O -0.536 6.536 20 C -0.142 4.142 21 H 0.124 0.876 22 C -0.098 4.098 23 C -0.201 4.201 24 C -0.113 4.113 25 C -0.130 4.130 26 C 0.087 3.913 27 H 0.090 0.910 28 O -0.551 6.551 29 C 0.068 3.932 30 H 0.268 0.732 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.407 0.593 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.385 0.615 43 H 0.079 0.921 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.418 -20.279 -6.750 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.338 3.662 12 O -0.383 6.383 13 N -0.362 5.362 14 C -0.028 4.028 15 C 0.037 3.963 16 H 0.133 0.867 17 N -0.354 5.354 18 C 0.332 3.668 19 O -0.413 6.413 20 C -0.163 4.163 21 H 0.142 0.858 22 C -0.136 4.136 23 C -0.202 4.202 24 C -0.150 4.150 25 C -0.167 4.167 26 C 0.027 3.973 27 H 0.108 0.892 28 O -0.356 6.356 29 C -0.056 4.056 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.242 0.758 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.233 0.767 43 H 0.097 0.903 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.672 -21.491 -6.659 24.902 hybrid contribution 2.694 2.299 0.247 3.550 sum 13.366 -19.192 -6.413 24.251 Atomic orbital electron populations 1.70028 1.05955 1.27410 1.46794 1.25003 0.95039 0.99064 0.94514 0.86108 0.79529 0.81849 0.77948 1.19639 1.20533 1.20536 1.22880 0.94878 0.91551 1.59004 0.90903 1.85453 1.04802 0.96367 1.96704 1.23504 1.06543 0.94908 1.04711 1.20059 0.85670 0.85377 0.75116 1.90730 1.14835 1.84979 1.47768 1.48372 1.05786 1.05771 1.76246 1.22707 0.98168 0.80561 1.01391 1.22156 0.92596 1.00608 0.80961 0.86677 1.45505 1.59286 1.24805 1.05760 1.19686 0.77195 0.81810 0.88066 1.90691 1.45378 1.32684 1.72510 1.21930 0.99545 1.03652 0.91126 0.85801 1.22701 0.93852 0.95443 1.01571 1.21155 1.05848 0.88375 1.04790 1.22594 1.01225 0.92661 0.98504 1.22765 1.01333 0.99421 0.93183 1.23150 0.86050 0.93727 0.94412 0.89223 1.86539 1.25177 1.70414 1.53454 1.22776 0.81890 0.97805 1.03172 0.92182 0.89337 0.89351 0.90213 0.89354 0.75845 0.87847 0.87387 0.88255 0.88498 0.88308 0.88588 0.76668 0.90317 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.98 9.50 30.94 0.29 -14.69 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.89 5.35 36.01 0.19 -2.70 16 11 C 0.55 10.30 7.87 -10.98 -0.09 10.21 16 12 O -0.51 -11.75 16.12 5.55 0.09 -11.67 16 13 N -0.62 -8.42 3.32 -170.38 -0.57 -8.98 16 14 C 0.10 1.17 6.62 -2.41 -0.02 1.15 16 15 C 0.14 1.40 3.31 -65.67 -0.22 1.19 16 16 H 0.12 1.16 7.54 -51.93 -0.39 0.77 16 17 N -0.70 -7.22 4.82 -51.62 -0.25 -7.46 16 18 C 0.55 6.53 7.61 -10.99 -0.08 6.45 16 19 O -0.54 -8.05 15.88 5.56 0.09 -7.96 16 20 C -0.14 -1.39 6.19 -91.78 -0.57 -1.96 16 21 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 22 C -0.10 -0.94 10.24 -26.73 -0.27 -1.21 16 23 C -0.20 -1.98 5.05 -154.51 -0.78 -2.76 16 24 C -0.11 -1.06 10.16 -26.73 -0.27 -1.33 16 25 C -0.13 -1.00 10.53 -26.73 -0.28 -1.28 16 26 C 0.09 0.63 4.10 -24.90 -0.10 0.52 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 O -0.55 -3.56 12.69 -35.23 -0.45 -4.01 16 29 C 0.07 0.62 6.25 -3.07 -0.02 0.60 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 32 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.31 8.03 -51.93 -0.42 0.90 16 35 H 0.41 3.73 8.40 -40.82 -0.34 3.38 16 36 H 0.10 1.10 8.14 -51.92 -0.42 0.68 16 37 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.38 0.93 9.11 45.56 0.42 1.34 16 43 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -37.19 390.73 -9.78 -46.97 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.77 Total: 3.99 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.31 Total: -3.83 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -0.08 Total: -41.61 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.27 Total: -23.63 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.19 -9.78 -46.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735965179.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.441 kcal (2) G-P(sol) polarization free energy of solvation -37.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds