Wall clock time and date at job start Tue Mar 31 2020 23:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46662 * 2 1 4 4 N 1.46496 * 109.47378 * 120.01011 * 2 1 3 5 5 C 1.34774 * 119.99544 * 274.99692 * 4 2 1 6 6 O 1.21279 * 120.00472 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00020 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.47200 * 179.97438 * 7 5 4 9 9 C 1.76198 * 99.99878 * 179.97438 * 8 7 5 10 10 H 1.08006 * 120.00031 * 359.97438 * 9 8 7 11 11 C 1.38801 * 120.00096 * 180.02562 * 9 8 7 12 12 N 1.31631 * 119.99946 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99679 * 359.97438 * 11 9 8 14 14 H 1.48490 * 109.47080 * 90.00385 * 13 11 9 15 15 H 1.48506 * 109.46635 * 210.00589 * 13 11 9 16 16 H 1.48499 * 109.47138 * 329.99770 * 13 11 9 17 17 C 1.53010 * 109.46752 * 240.00884 * 2 1 3 18 18 C 1.53930 * 113.73153 * 158.76279 * 17 2 1 19 19 N 1.48189 * 86.10079 * 221.95415 * 18 17 2 20 20 C 1.46897 * 111.06970 * 137.52176 * 19 18 17 21 21 C 1.52999 * 109.47186 * 70.56897 * 20 19 18 22 22 C 1.52999 * 109.47293 * 180.02562 * 21 20 19 23 23 F 1.39892 * 109.47373 * 59.99774 * 22 21 20 24 24 F 1.39905 * 109.47168 * 180.02562 * 22 21 20 25 25 F 1.39898 * 109.46959 * 299.99629 * 22 21 20 26 26 C 1.47964 * 90.79549 * 24.60127 * 19 18 17 27 27 H 1.08997 * 109.46755 * 299.99136 * 1 2 3 28 28 H 1.08992 * 109.47534 * 59.99427 * 1 2 3 29 29 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 30 30 H 0.96994 * 120.00700 * 94.99812 * 4 2 1 31 31 H 1.09001 * 109.46953 * 299.99667 * 7 5 4 32 32 H 1.09000 * 109.47318 * 59.99264 * 7 5 4 33 33 H 0.97001 * 119.99197 * 179.97438 * 12 11 9 34 34 H 1.08998 * 112.93440 * 290.32971 * 17 2 1 35 35 H 1.08997 * 113.76317 * 336.23802 * 18 17 2 36 36 H 1.09001 * 113.75721 * 107.60307 * 18 17 2 37 37 H 1.08992 * 109.47235 * 190.56878 * 20 19 18 38 38 H 1.09002 * 109.47130 * 310.57211 * 20 19 18 39 39 H 1.09005 * 109.47298 * 299.99931 * 21 20 19 40 40 H 1.08997 * 109.47426 * 59.99730 * 21 20 19 41 41 H 1.09003 * 113.75768 * 221.08351 * 26 19 18 42 42 H 1.09000 * 113.75464 * 89.72007 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1472 -0.0185 2.3570 6 8 1.8583 1.1581 2.4118 7 6 2.6501 -0.7289 3.5873 8 16 2.7117 0.4341 4.9728 9 6 3.3147 -0.6313 6.2400 10 1 3.5233 -1.6679 6.0201 11 6 3.5207 -0.1386 7.5212 12 7 3.9717 -0.9344 8.4677 13 14 3.1593 1.6542 7.9017 14 1 1.7484 1.7916 8.3439 15 1 4.0645 2.1232 8.9815 16 1 3.3779 2.4729 6.6822 17 6 2.0400 -0.7211 -1.2495 18 6 3.4848 -0.3522 -1.6314 19 7 2.9992 -0.3200 -3.0311 20 6 3.5497 0.8339 -3.7546 21 6 5.0446 0.6173 -3.9982 22 6 5.6180 1.8194 -4.7512 23 9 5.4328 2.9783 -3.9898 24 9 6.9848 1.6210 -4.9744 25 9 4.9609 1.9576 -5.9784 26 6 1.6205 -0.0472 -2.5683 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 2.2491 -1.6319 1.1524 31 1 1.9779 -1.5512 3.8323 32 1 3.6494 -1.1208 3.3976 33 1 4.1160 -0.5899 9.3630 34 1 1.8527 -1.7947 -1.2264 35 1 3.8041 0.6196 -1.2548 36 1 4.2071 -1.1443 -1.4340 37 1 3.0376 0.9412 -4.7107 38 1 3.4053 1.7371 -3.1617 39 1 5.5567 0.5100 -3.0419 40 1 5.1890 -0.2859 -4.5910 41 1 0.8560 -0.5960 -3.1182 42 1 1.3935 1.0140 -2.4664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755370752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:38 Heat of formation + Delta-G solvation = -169.467530 kcal Electronic energy + Delta-G solvation = -26815.602879 eV Core-core repulsion = 22314.521898 eV Total energy + Delta-G solvation = -4501.080981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.51651 -48.01267 -47.99395 -40.83821 -39.16413 -35.65612 -33.77269 -32.45722 -31.41302 -28.87702 -28.43064 -26.49275 -25.63209 -24.97042 -23.08765 -21.60973 -20.57292 -19.95414 -18.96913 -18.81550 -17.90878 -17.85461 -16.81488 -16.56336 -16.05101 -15.56699 -15.17163 -15.04272 -14.99403 -14.80946 -14.71508 -14.42359 -14.23655 -14.13870 -14.11247 -13.86453 -13.50556 -13.34216 -13.17457 -12.98040 -12.81140 -12.52239 -12.38238 -12.10729 -11.90963 -11.84755 -11.29479 -11.17786 -11.09135 -11.02936 -11.01130 -10.61014 -9.87553 -9.56928 -9.41751 -9.03515 -8.97600 -8.52358 -6.94007 -6.30760 -4.02624 2.28973 2.72601 2.93390 3.15649 3.25022 3.31841 3.48685 3.49658 3.57288 3.60382 3.66288 4.00986 4.24642 4.31015 4.31771 4.42237 4.68469 4.78972 4.82757 4.84455 4.90313 5.01671 5.08323 5.14360 5.15869 5.20601 5.24013 5.30738 5.37906 5.51805 5.68239 5.71530 5.73815 5.91608 5.98903 6.10172 6.42401 6.54012 7.57883 7.92342 8.39774 8.46006 9.15438 10.78458 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.002098 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.237152 B =13339.865921 C =14362.683085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.087 0.913 4 N -0.731 5.731 5 C 0.532 3.468 6 O -0.520 6.520 7 C -0.124 4.124 8 S -0.142 6.142 9 C -0.521 4.521 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C -0.121 4.121 18 C 0.001 3.999 19 N -0.477 5.477 20 C 0.017 3.983 21 C -0.163 4.163 22 C 0.454 3.546 23 F -0.183 7.183 24 F -0.183 7.183 25 F -0.184 7.184 26 C 0.015 3.985 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.399 0.601 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.271 0.729 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 0.043 -29.228 29.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 H 0.105 0.895 4 N -0.385 5.385 5 C 0.318 3.682 6 O -0.394 6.394 7 C -0.275 4.275 8 S 0.084 5.916 9 C -0.669 4.669 10 H 0.106 0.894 11 C -0.114 4.114 12 N -0.517 5.517 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.159 1.159 17 C -0.140 4.140 18 C -0.127 4.127 19 N -0.199 5.199 20 C -0.112 4.112 21 C -0.202 4.202 22 C 0.399 3.601 23 F -0.164 7.164 24 F -0.165 7.165 25 F -0.166 7.166 26 C -0.114 4.114 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.233 0.767 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.114 0.886 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.894 1.484 -29.418 29.517 hybrid contribution 0.440 -0.271 0.683 0.856 sum -1.454 1.212 -28.736 28.798 Atomic orbital electron populations 1.22161 0.95069 1.02284 1.02660 1.20917 0.94285 0.97067 0.83106 0.89531 1.46013 1.69176 1.14002 1.09334 1.20284 0.76848 0.87215 0.83850 1.90696 1.48500 1.15787 1.84438 1.23285 1.04466 1.03459 0.96297 1.84790 1.87172 1.16501 1.03136 1.22314 1.50608 0.98689 0.95287 0.89387 1.24721 0.93373 0.98292 0.94967 1.69941 1.43399 1.35787 1.02536 0.86731 0.79313 0.85226 0.80556 1.19217 1.19945 1.15935 1.23266 0.95665 1.01545 0.93526 1.24153 0.97561 1.02370 0.88619 1.68592 1.04021 1.35021 1.12269 1.22602 0.92931 0.94224 1.01461 1.22798 0.98257 0.95812 1.03304 1.20538 0.76119 0.85320 0.78105 1.93205 1.94935 1.52796 1.75513 1.93205 1.33237 1.95068 1.94980 1.93188 1.80846 1.96430 1.46093 1.23942 0.92418 1.00571 0.94438 0.91616 0.91873 0.92327 0.76671 0.88526 0.88497 0.91932 0.87507 0.90506 0.88755 0.89147 0.92501 0.87165 0.86353 0.88619 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.31 37.16 0.35 -1.15 16 2 C 0.15 1.44 2.38 -67.93 -0.16 1.28 16 3 H 0.09 1.00 7.42 -51.93 -0.39 0.62 16 4 N -0.73 -8.21 5.08 -53.80 -0.27 -8.48 16 5 C 0.53 8.81 7.81 -10.98 -0.09 8.73 16 6 O -0.52 -10.62 15.52 5.56 0.09 -10.53 16 7 C -0.12 -2.30 6.16 36.01 0.22 -2.08 16 8 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 9 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 10 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 11 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 12 N -0.88 -26.37 13.97 55.49 0.78 -25.60 16 13 Si 0.86 21.62 27.74 -169.99 -4.71 16.91 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 17 C -0.12 -0.80 3.46 -89.69 -0.31 -1.11 16 18 C 0.00 0.01 6.68 -2.63 -0.02 -0.01 16 19 N -0.48 -3.13 6.26 -238.09 -1.49 -4.62 16 20 C 0.02 0.10 4.58 -3.83 -0.02 0.08 16 21 C -0.16 -0.91 5.32 -26.73 -0.14 -1.05 16 22 C 0.45 3.32 3.16 37.16 0.12 3.43 16 23 F -0.18 -1.61 16.80 2.25 0.04 -1.57 16 24 F -0.18 -1.54 17.32 2.25 0.04 -1.50 16 25 F -0.18 -1.46 16.80 2.25 0.04 -1.42 16 26 C 0.02 0.09 6.67 -2.76 -0.02 0.07 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.40 3.41 8.60 -40.82 -0.35 3.06 16 31 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 32 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.59 7.64 -51.93 -0.40 0.20 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.52 7.80 -51.93 -0.41 0.12 16 38 H 0.06 0.37 7.36 -51.93 -0.38 -0.01 16 39 H 0.11 0.57 7.55 -51.93 -0.39 0.18 16 40 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.45 7.75 -51.93 -0.40 0.05 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -33.49 373.16 -7.79 -41.28 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.06 Total: -0.88 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 0.15 Total: -3.67 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.99 Total: -38.70 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.11 Total: -4.49 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.49 -7.79 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755370752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.188 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds