Wall clock time and date at job start Wed Apr 1 2020 00:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00194 * 2 1 4 4 C 1.52995 * 109.47420 * 184.87814 * 3 2 1 5 5 N 1.46896 * 109.47406 * 64.10425 * 4 3 2 6 6 C 1.46904 * 110.99975 * 199.87795 * 5 4 3 7 7 C 1.50701 * 109.47039 * 66.05020 * 6 5 4 8 8 H 1.08000 * 119.99905 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99770 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00039 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99737 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47167 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.46977 * 120.00107 * 11 9 7 14 14 H 1.48499 * 109.46671 * 239.99859 * 11 9 7 15 15 C 1.46898 * 110.99835 * 75.92721 * 5 4 3 16 16 C 1.50702 * 109.46994 * 199.59282 * 15 5 4 17 17 O 1.21282 * 120.00178 * 4.46060 * 16 15 5 18 18 N 1.34775 * 119.99961 * 184.46074 * 16 15 5 19 19 C 1.39928 * 120.00167 * 181.95635 * 18 16 15 20 20 C 1.38901 * 120.06057 * 335.48939 * 19 18 16 21 21 C 1.38094 * 119.95312 * 179.97438 * 20 19 18 22 22 C 1.38276 * 120.08597 * 359.74284 * 21 20 19 23 23 C 1.38378 * 120.12802 * 0.51102 * 22 21 20 24 24 Cl 1.73602 * 119.98164 * 179.76801 * 23 22 21 25 25 C 1.38249 * 120.03975 * 359.48936 * 23 22 21 26 26 C 1.50703 * 120.04238 * 180.22834 * 25 23 22 27 27 H 1.09002 * 109.46763 * 184.89090 * 1 2 3 28 28 H 1.08999 * 109.47408 * 304.89036 * 1 2 3 29 29 H 1.08998 * 109.47278 * 64.88851 * 1 2 3 30 30 H 1.08997 * 109.47323 * 64.87145 * 3 2 1 31 31 H 1.09001 * 109.46955 * 304.87684 * 3 2 1 32 32 H 1.09002 * 109.47344 * 304.10189 * 4 3 2 33 33 H 1.09002 * 109.47379 * 184.10660 * 4 3 2 34 34 H 1.09004 * 109.47018 * 186.04750 * 6 5 4 35 35 H 1.08991 * 109.47237 * 306.04515 * 6 5 4 36 36 H 0.97003 * 119.99870 * 180.02562 * 10 9 7 37 37 H 1.08991 * 109.47499 * 79.59391 * 15 5 4 38 38 H 1.09001 * 109.47344 * 319.58885 * 15 5 4 39 39 H 0.97002 * 120.00003 * 1.95652 * 18 16 15 40 40 H 1.08004 * 120.02291 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.95539 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.94255 * 180.27888 * 22 21 20 43 43 H 1.09006 * 109.47214 * 90.00162 * 26 25 23 44 44 H 1.08997 * 109.47942 * 210.00372 * 26 25 23 45 45 H 1.09003 * 109.47490 * 330.00829 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5306 1.1868 -0.1227 5 7 3.8721 0.5892 -1.4204 6 6 5.2302 0.0295 -1.4012 7 6 5.2800 -1.1352 -0.4462 8 1 4.3918 -1.4298 0.0930 9 6 6.4596 -1.8246 -0.2607 10 7 7.5410 -1.4661 -0.9176 11 14 6.5215 -3.2677 0.9238 12 1 5.1819 -3.4659 1.5331 13 1 6.9177 -4.4953 0.1880 14 1 7.5145 -2.9888 1.9922 15 6 3.7210 1.5670 -2.5062 16 6 3.6019 0.8421 -3.8221 17 8 3.5578 -0.3697 -3.8450 18 7 3.5445 1.5404 -4.9734 19 6 3.3927 0.8694 -6.1918 20 6 3.7983 -0.4535 -6.3128 21 6 3.6470 -1.1138 -7.5162 22 6 3.0874 -0.4613 -8.5993 23 6 2.6869 0.8582 -8.4842 24 17 1.9902 1.6756 -9.8481 25 6 2.8359 1.5243 -7.2819 26 6 2.3950 2.9598 -7.1550 27 1 -0.3633 -1.0240 0.0876 28 1 -0.3634 0.5878 0.8429 29 1 -0.3634 0.4361 -0.9305 30 1 1.7594 1.8149 0.9304 31 1 1.6212 1.8764 -0.8431 32 1 3.9117 0.5551 0.6797 33 1 3.9795 2.1774 -0.0494 34 1 5.4975 -0.3097 -2.4021 35 1 5.9344 0.7956 -1.0771 36 1 8.3708 -1.9514 -0.7874 37 1 4.5922 2.2215 -2.5296 38 1 2.8237 2.1623 -2.3369 39 1 3.6083 2.5082 -4.9573 40 1 4.2318 -0.9655 -5.4663 41 1 3.9628 -2.1423 -7.6105 42 1 2.9660 -0.9813 -9.5381 43 1 1.3534 2.9931 -6.8351 44 1 3.0176 3.4675 -6.4183 45 1 2.4947 3.4573 -8.1197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072689160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:34 Heat of formation + Delta-G solvation = -66.261629 kcal Electronic energy + Delta-G solvation = -27513.943240 eV Core-core repulsion = 23557.150637 eV Total energy + Delta-G solvation = -3956.792603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77357 -39.95295 -38.92963 -37.61924 -37.27158 -35.86337 -34.66457 -33.49310 -31.49310 -30.82624 -29.62216 -27.93755 -27.27694 -26.51727 -24.26245 -23.97793 -22.60347 -21.95758 -21.15300 -19.00738 -18.53126 -18.25852 -17.36211 -17.14216 -16.89372 -16.53735 -16.41284 -16.10738 -16.01399 -15.51046 -15.33490 -15.19654 -14.84826 -14.71394 -14.35665 -14.12570 -13.82784 -13.52261 -13.37702 -13.33959 -13.12832 -12.92387 -12.82008 -12.61052 -12.52783 -12.51073 -12.48106 -12.33668 -11.95836 -11.76203 -11.58831 -11.39133 -11.22564 -10.61381 -10.56671 -10.39163 -9.64153 -9.09775 -8.90816 -8.17183 -6.23403 0.14483 0.17110 1.05717 1.37879 1.40231 1.54038 1.65291 1.96431 2.42566 2.65363 3.08629 3.15813 3.30509 3.68487 3.80478 3.90723 4.05933 4.13358 4.31120 4.34187 4.36976 4.39350 4.47793 4.57433 4.60469 4.61597 4.63376 4.71479 4.73918 4.74390 4.90292 5.05443 5.15494 5.19389 5.21306 5.22708 5.33331 5.34899 5.47626 5.69602 5.89391 6.09379 6.33652 6.39366 6.52876 6.71082 6.92104 7.23027 7.44330 8.94097 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.003042 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.624834 B = 9202.614276 C =10609.776177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.409 6.409 3 C 0.073 3.927 4 C 0.058 3.942 5 N -0.528 5.528 6 C 0.218 3.782 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.962 3.038 12 H -0.268 1.268 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.037 3.963 16 C 0.507 3.493 17 O -0.527 6.527 18 N -0.659 5.659 19 C 0.155 3.845 20 C -0.157 4.157 21 C -0.097 4.097 22 C -0.128 4.128 23 C -0.025 4.025 24 Cl -0.055 7.055 25 C -0.112 4.112 26 C -0.113 4.113 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.066 0.934 34 H -0.001 1.001 35 H -0.031 1.031 36 H 0.262 0.738 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.425 0.575 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.671 13.417 -12.192 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.003 4.003 4 C -0.070 4.070 5 N -0.252 5.252 6 C 0.092 3.908 7 C -0.547 4.547 8 H 0.074 0.926 9 C -0.197 4.197 10 N -0.576 5.576 11 Si 0.787 3.213 12 H -0.193 1.193 13 H -0.209 1.209 14 H -0.199 1.199 15 C -0.094 4.094 16 C 0.295 3.705 17 O -0.401 6.401 18 N -0.307 5.307 19 C 0.059 3.941 20 C -0.177 4.177 21 C -0.115 4.115 22 C -0.147 4.147 23 C -0.052 4.052 24 Cl -0.026 7.026 25 C -0.116 4.116 26 C -0.170 4.170 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.017 0.983 35 H -0.014 1.014 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.152 0.848 39 H 0.266 0.734 40 H 0.142 0.858 41 H 0.163 0.837 42 H 0.172 0.828 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.808 12.066 -12.311 22.086 hybrid contribution 0.965 0.118 0.542 1.113 sum -12.843 12.184 -11.769 21.258 Atomic orbital electron populations 1.22817 0.80616 1.02886 1.00447 1.88087 1.20424 1.28926 1.95373 1.22656 0.92488 0.84472 1.00701 1.22136 0.94907 0.98309 0.91620 1.61543 1.28584 1.32339 1.02751 1.19295 0.83136 0.92980 0.95388 1.21444 0.95257 1.14352 1.23643 0.92627 1.25814 0.95300 1.00348 0.98195 1.70080 1.01187 1.42500 1.43867 0.85439 0.78195 0.78935 0.78698 1.19260 1.20855 1.19854 1.22053 1.04464 0.94004 0.88895 1.21381 0.74928 0.88079 0.86109 1.90683 1.46593 1.15964 1.86825 1.43473 1.72322 1.11461 1.03471 1.17576 0.98101 0.92516 0.85874 1.21783 1.01368 0.95147 0.99434 1.21200 0.98144 1.00842 0.91358 1.21216 1.00261 0.92953 1.00295 1.20600 1.02094 0.93648 0.88882 1.98347 1.82707 1.78928 1.42580 1.19588 1.01657 0.99120 0.91195 1.20848 1.02456 0.89282 1.04397 0.90195 0.92478 0.93878 0.90959 0.92197 0.91697 0.91611 0.98317 1.01355 0.92939 0.90646 0.84836 0.73438 0.85766 0.83727 0.82799 0.89650 0.89963 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -14.66 10.64 -148.98 -1.58 -16.24 16 3 C 0.07 2.10 6.12 71.98 0.44 2.54 16 4 C 0.06 2.08 5.18 86.30 0.45 2.53 16 5 N -0.53 -22.58 3.90 -905.39 -3.53 -26.11 16 6 C 0.22 11.86 4.36 85.56 0.37 12.24 16 7 C -0.51 -30.40 8.23 25.60 0.21 -30.19 16 8 H 0.06 3.40 7.31 -2.91 -0.02 3.38 16 9 C 0.00 0.04 5.46 84.66 0.46 0.50 16 10 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 11 Si 0.96 47.03 29.54 68.60 2.03 49.06 16 12 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 14 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 15 C 0.04 1.17 5.30 85.56 0.45 1.62 16 16 C 0.51 17.95 7.29 87.66 0.64 18.58 16 17 O -0.53 -24.70 12.35 -3.04 -0.04 -24.74 16 18 N -0.66 -17.27 5.18 -303.52 -1.57 -18.84 16 19 C 0.16 4.40 6.44 38.15 0.25 4.65 16 20 C -0.16 -5.22 8.79 22.39 0.20 -5.02 16 21 C -0.10 -2.59 10.04 22.24 0.22 -2.36 16 22 C -0.13 -2.84 9.83 22.31 0.22 -2.63 16 23 C -0.03 -0.55 6.31 22.31 0.14 -0.41 16 24 Cl -0.05 -0.97 27.29 -2.72 -0.07 -1.05 16 25 C -0.11 -2.51 5.90 -19.72 -0.12 -2.62 16 26 C -0.11 -1.68 9.34 71.24 0.67 -1.01 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.41 6.68 -2.39 -0.02 1.40 16 32 H 0.06 2.80 6.58 -2.39 -0.02 2.79 16 33 H 0.07 1.95 8.00 -2.39 -0.02 1.93 16 34 H 0.00 -0.08 6.84 -2.38 -0.02 -0.09 16 35 H -0.03 -1.76 8.12 -2.39 -0.02 -1.77 16 36 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.08 2.14 8.00 -2.39 -0.02 2.12 16 38 H 0.13 3.01 6.46 -2.39 -0.02 2.99 16 39 H 0.43 7.32 6.91 -92.71 -0.64 6.68 16 40 H 0.12 5.21 5.51 -2.91 -0.02 5.19 16 41 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 42 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.08 0.91 6.41 -2.39 -0.02 0.89 16 45 H 0.08 1.12 6.90 -2.39 -0.02 1.11 16 Total: -1.00 -80.43 381.93 1.74 -78.69 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.38 Total: 16.76 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 5.85 Total: 0.39 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -4.81 Total: -102.87 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -1.62 Total: -40.98 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.07 Total: -1.05 kcal Total: -80.43 1.74 -78.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072689160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.429 kcal (2) G-P(sol) polarization free energy of solvation -80.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds