Wall clock time and date at job start Wed Apr 1 2020 00:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99783 * 2 1 4 4 C 1.52995 * 109.47306 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46973 * 66.22335 * 4 3 2 6 6 C 1.46901 * 110.99935 * 289.77448 * 5 4 3 7 7 C 1.50702 * 109.46982 * 299.92549 * 6 5 4 8 8 H 1.08000 * 119.99857 * 4.07103 * 7 6 5 9 9 C 1.37874 * 120.00225 * 184.06986 * 7 6 5 10 10 N 1.31515 * 120.00105 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99950 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47159 * 90.00002 * 11 9 7 13 13 H 1.48501 * 109.47142 * 209.99967 * 11 9 7 14 14 H 1.48500 * 109.47163 * 330.00077 * 11 9 7 15 15 C 1.46900 * 110.99947 * 53.72203 * 5 4 3 16 16 C 1.50706 * 109.46750 * 66.04737 * 15 5 4 17 17 O 1.21286 * 120.00143 * 0.02562 * 16 15 5 18 18 N 1.34774 * 119.99651 * 180.02562 * 16 15 5 19 19 C 1.39980 * 119.99663 * 185.58142 * 18 16 15 20 20 C 1.38853 * 120.07698 * 18.89124 * 19 18 16 21 21 C 1.38114 * 119.94150 * 179.97438 * 20 19 18 22 22 C 1.38295 * 120.09077 * 359.97438 * 21 20 19 23 23 C 1.50708 * 119.92136 * 180.02562 * 22 21 20 24 24 C 1.38262 * 120.15239 * 359.77043 * 22 21 20 25 25 C 1.38227 * 120.05655 * 0.50949 * 24 22 21 26 26 Cl 1.73602 * 120.04594 * 179.74333 * 25 24 22 27 27 H 1.09008 * 109.46621 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46951 * 299.99819 * 1 2 3 29 29 H 1.08997 * 109.47306 * 59.99835 * 1 2 3 30 30 H 1.09005 * 109.47191 * 59.99925 * 3 2 1 31 31 H 1.08998 * 109.47428 * 300.00199 * 3 2 1 32 32 H 1.09005 * 109.47271 * 306.22642 * 4 3 2 33 33 H 1.08999 * 109.47753 * 186.22232 * 4 3 2 34 34 H 1.08999 * 109.46985 * 59.92294 * 6 5 4 35 35 H 1.08997 * 109.46848 * 179.97438 * 6 5 4 36 36 H 0.97003 * 119.99959 * 180.02562 * 10 9 7 37 37 H 1.08995 * 109.47157 * 306.05054 * 15 5 4 38 38 H 1.08993 * 109.47146 * 186.04623 * 15 5 4 39 39 H 0.97002 * 120.00557 * 5.57833 * 18 16 15 40 40 H 1.07999 * 120.02507 * 0.02562 * 20 19 18 41 41 H 1.07999 * 119.95340 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.46717 * 90.00645 * 23 22 21 43 43 H 1.09002 * 109.47044 * 209.99826 * 23 22 21 44 44 H 1.08997 * 109.47089 * 330.00543 * 23 22 21 45 45 H 1.08008 * 119.96975 * 180.25774 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9800 0.5892 -1.2666 6 6 3.6049 -0.8291 -1.3419 7 6 4.2486 -1.5799 -0.2047 8 1 4.8196 -1.0458 0.5403 9 6 4.1085 -2.9486 -0.1155 10 7 4.6698 -3.6037 0.8772 11 14 3.1215 -3.8725 -1.4045 12 1 4.0191 -4.2860 -2.5128 13 1 2.5079 -5.0766 -0.7890 14 1 2.0527 -2.9893 -1.9364 15 6 3.4481 1.3359 -2.4144 16 6 4.0495 2.7176 -2.4370 17 8 4.8434 3.0476 -1.5815 18 7 3.7051 3.5866 -3.4080 19 6 4.3488 4.8263 -3.4982 20 6 5.5740 5.0212 -2.8746 21 6 6.2070 6.2454 -2.9659 22 6 5.6224 7.2768 -3.6780 23 6 6.3167 8.6109 -3.7756 24 6 4.4050 7.0853 -4.3048 25 6 3.7634 5.8644 -4.2127 26 17 2.2317 5.6263 -4.9944 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8494 0.5508 0.8299 33 1 3.9782 2.1745 0.1120 34 1 2.5212 -0.9226 -1.2717 35 1 3.9456 -1.2451 -2.2900 36 1 4.5716 -4.5668 0.9398 37 1 2.3644 1.4128 -2.3272 38 1 3.7023 0.8139 -3.3368 39 1 3.0112 3.3529 -4.0443 40 1 6.0320 4.2160 -2.3193 41 1 7.1597 6.3974 -2.4805 42 1 6.9671 8.6188 -4.6503 43 1 5.5725 9.4018 -3.8692 44 1 6.9126 8.7769 -2.8782 45 1 3.9531 7.8915 -4.8637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072690011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:39 Heat of formation + Delta-G solvation = -32.698074 kcal Electronic energy + Delta-G solvation = -27622.850081 eV Core-core repulsion = 23667.512903 eV Total energy + Delta-G solvation = -3955.337178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.81507 -39.12821 -37.91770 -36.80358 -35.82956 -35.01208 -32.42109 -31.88463 -30.94669 -29.43184 -28.88212 -26.80032 -25.99859 -24.82835 -23.36593 -22.57378 -21.81559 -20.55888 -19.59692 -18.00796 -17.10742 -16.83482 -16.35601 -16.13846 -16.03925 -15.48111 -14.95727 -14.78311 -14.39375 -14.25383 -14.23112 -13.98833 -13.89640 -13.63562 -13.36994 -13.05836 -12.65969 -12.36320 -12.19484 -12.16641 -11.84111 -11.73441 -11.63057 -11.45550 -11.30504 -11.22276 -11.13854 -10.67102 -10.54258 -10.51615 -10.36133 -9.79670 -9.44558 -9.14544 -9.08675 -8.97752 -8.42836 -8.11102 -7.29864 -5.91663 -3.85575 0.89183 1.07892 1.82483 2.60115 2.84148 3.35899 3.42924 3.45865 3.48421 4.23968 4.48224 4.53673 4.59642 4.72238 4.85228 4.90545 4.99913 5.19066 5.29741 5.32198 5.41173 5.41977 5.43216 5.53767 5.57277 5.61251 5.66451 5.70594 5.77025 5.89400 5.93264 5.96137 6.00478 6.21772 6.29295 6.37081 6.73162 6.76216 6.99373 7.20684 7.30591 7.60489 7.67481 7.92363 8.01519 8.16847 8.75581 9.15223 9.70390 11.21970 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.002816 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.661018 B = 9942.378692 C =10520.647258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.351 6.351 3 C 0.023 3.977 4 C 0.054 3.946 5 N -0.502 5.502 6 C 0.152 3.848 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.906 5.906 11 Si 0.874 3.126 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.266 1.266 15 C 0.028 3.972 16 C 0.516 3.484 17 O -0.489 6.489 18 N -0.675 5.675 19 C 0.168 3.832 20 C -0.128 4.128 21 C -0.090 4.090 22 C -0.105 4.105 23 C -0.110 4.110 24 C -0.090 4.090 25 C -0.075 4.075 26 Cl -0.072 7.072 27 H 0.081 0.919 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.030 0.970 35 H 0.016 0.984 36 H 0.261 0.739 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.411 0.589 40 H 0.169 0.831 41 H 0.131 0.869 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 22.514 -11.770 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.269 6.269 3 C -0.055 4.055 4 C -0.074 4.074 5 N -0.225 5.225 6 C 0.027 3.973 7 C -0.529 4.529 8 H 0.097 0.903 9 C -0.132 4.132 10 N -0.546 5.546 11 Si 0.702 3.298 12 H -0.206 1.206 13 H -0.216 1.216 14 H -0.191 1.191 15 C -0.104 4.104 16 C 0.305 3.695 17 O -0.362 6.362 18 N -0.320 5.320 19 C 0.071 3.929 20 C -0.148 4.148 21 C -0.109 4.109 22 C -0.106 4.106 23 C -0.166 4.166 24 C -0.109 4.109 25 C -0.105 4.105 26 Cl -0.043 7.043 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.048 0.952 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.248 0.752 40 H 0.186 0.814 41 H 0.149 0.851 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.570 22.263 -11.131 25.145 hybrid contribution -2.302 -0.566 -1.154 2.636 sum -5.872 21.697 -12.285 25.615 Atomic orbital electron populations 1.22720 0.83580 1.02254 0.98735 1.88410 1.17508 1.26328 1.94663 1.23413 0.97788 0.85607 0.98741 1.22482 0.88752 1.01446 0.94759 1.61966 1.57665 1.04013 0.98899 1.20519 0.96730 0.82527 0.97519 1.20911 1.31447 0.91662 1.08925 0.90330 1.24802 0.95468 0.97424 0.95505 1.69895 1.45280 1.08018 1.31426 0.86883 0.81063 0.79623 0.82250 1.20605 1.21573 1.19115 1.22081 0.98111 0.90878 0.99328 1.21251 0.81777 0.86756 0.79735 1.90557 1.32494 1.76967 1.36167 1.43808 1.40198 1.14897 1.33113 1.17624 0.92501 0.84924 0.97862 1.21844 0.92693 0.99710 1.00541 1.21131 0.99808 0.92224 0.97738 1.19824 0.95050 0.96842 0.98926 1.20743 1.00191 0.93081 1.02608 1.20665 0.95011 0.95097 1.00117 1.20592 0.89943 0.95283 1.04652 1.98354 1.29373 1.96910 1.79682 0.90049 0.94800 0.95220 0.93910 0.94707 0.87817 0.89201 0.95240 0.96617 0.92943 0.91954 0.87955 0.75249 0.81387 0.85098 0.91144 0.91590 0.91305 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 101.05 1.11 1.47 16 2 O -0.35 -6.85 7.54 -35.23 -0.27 -7.12 16 3 C 0.02 0.39 5.67 37.16 0.21 0.60 16 4 C 0.05 1.06 5.33 -3.82 -0.02 1.04 16 5 N -0.50 -10.35 4.49 -237.51 -1.07 -11.41 16 6 C 0.15 3.62 3.36 -4.97 -0.02 3.61 16 7 C -0.49 -13.95 8.99 -34.44 -0.31 -14.26 16 8 H 0.08 2.45 6.83 -52.49 -0.36 2.09 16 9 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 10 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 11 Si 0.87 21.76 27.39 -169.99 -4.66 17.11 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 14 H -0.27 -6.33 6.66 56.52 0.38 -5.95 16 15 C 0.03 0.44 5.09 -4.97 -0.03 0.41 16 16 C 0.52 7.71 7.44 -10.98 -0.08 7.63 16 17 O -0.49 -8.62 11.18 5.55 0.06 -8.56 16 18 N -0.68 -8.17 5.26 -9.83 -0.05 -8.22 16 19 C 0.17 2.07 6.51 -83.64 -0.54 1.52 16 20 C -0.13 -1.62 8.80 -39.40 -0.35 -1.97 16 21 C -0.09 -0.93 9.69 -39.61 -0.38 -1.32 16 22 C -0.11 -0.95 5.88 -104.59 -0.62 -1.57 16 23 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 24 C -0.09 -0.84 9.48 -39.58 -0.38 -1.22 16 25 C -0.08 -0.81 6.34 -39.32 -0.25 -1.06 16 26 Cl -0.07 -0.68 27.71 -51.86 -1.44 -2.12 16 27 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.53 5.84 -51.93 -0.30 0.23 16 32 H 0.10 2.37 6.13 -51.93 -0.32 2.05 16 33 H 0.09 1.70 6.02 -51.93 -0.31 1.38 16 34 H 0.03 0.72 4.61 -51.93 -0.24 0.48 16 35 H 0.02 0.38 7.26 -51.93 -0.38 0.00 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.06 0.90 5.73 -51.93 -0.30 0.60 16 38 H 0.10 1.47 8.01 -51.93 -0.42 1.05 16 39 H 0.41 4.06 7.61 -40.82 -0.31 3.75 16 40 H 0.17 2.47 5.37 -52.49 -0.28 2.19 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 44 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 45 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -33.08 372.16 -8.59 -41.67 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.17 Total: 3.98 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.38 Total: -3.53 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.34 Total: -47.04 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.20 Total: -15.68 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.66 Total: 17.11 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.44 Total: -2.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.08 -8.59 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.968 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds