Wall clock time and date at job start Tue Mar 31 2020 23:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86793 * 120.00283 * 2 1 4 4 H 1.48503 * 109.47203 * 270.00034 * 3 2 1 5 5 H 1.48505 * 109.47295 * 29.99895 * 3 2 1 6 6 H 1.48502 * 109.47308 * 149.99626 * 3 2 1 7 7 C 1.38649 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00418 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00311 * 0.02562 * 7 2 1 10 10 C 1.35750 * 117.00220 * 185.05228 * 9 7 2 11 11 C 1.38877 * 120.07071 * 354.46695 * 10 9 7 12 12 C 1.38093 * 119.93088 * 180.02562 * 11 10 9 13 13 C 1.38310 * 120.07132 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.93185 * 179.97438 * 13 12 11 15 15 N 1.46495 * 109.47405 * 90.00058 * 14 13 12 16 16 S 1.65597 * 120.00255 * 164.99852 * 15 14 13 17 17 O 1.42096 * 106.40125 * 311.46256 * 16 15 14 18 18 O 1.42102 * 106.40296 * 178.53840 * 16 15 14 19 19 N 1.65599 * 107.21627 * 65.00154 * 16 15 14 20 20 C 1.46928 * 120.62946 * 269.72049 * 19 16 15 21 21 C 1.53620 * 108.54660 * 126.37042 * 20 19 16 22 22 C 1.53038 * 109.24283 * 54.85366 * 21 20 19 23 23 C 1.53043 * 109.54185 * 298.51584 * 22 21 20 24 24 C 1.46929 * 120.63526 * 90.00131 * 19 16 15 25 25 C 1.38300 * 120.13608 * 0.25169 * 13 12 11 26 26 C 1.38106 * 120.06758 * 359.45198 * 25 13 12 27 27 H 0.97007 * 119.99565 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.03039 * 359.97438 * 11 10 9 29 29 H 1.08000 * 119.96545 * 180.02562 * 12 11 10 30 30 H 1.09004 * 109.47161 * 330.00019 * 14 13 12 31 31 H 1.08998 * 109.46949 * 210.00181 * 14 13 12 32 32 H 0.96998 * 119.99593 * 344.99665 * 15 14 13 33 33 H 1.09010 * 109.58682 * 246.20480 * 20 19 16 34 34 H 1.08998 * 109.58950 * 6.62519 * 20 19 16 35 35 H 1.08999 * 109.63439 * 294.86719 * 21 20 19 36 36 H 1.09000 * 109.43675 * 174.72270 * 21 20 19 37 37 H 1.09000 * 109.46380 * 178.49168 * 22 21 20 38 38 H 1.09006 * 109.45914 * 58.53526 * 22 21 20 39 39 H 1.09002 * 109.49646 * 301.41359 * 23 22 21 40 40 H 1.08996 * 109.49986 * 181.31417 * 23 22 21 41 41 H 1.09001 * 109.58251 * 353.37253 * 24 19 16 42 42 H 1.09000 * 109.58947 * 113.79436 * 24 19 16 43 43 H 1.07996 * 119.96842 * 179.70053 * 25 13 12 44 44 H 1.08003 * 120.03466 * 180.26870 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 3.4570 -3.4396 0.0951 12 6 4.2021 -4.5972 0.2037 13 6 3.5682 -5.8206 0.3242 14 6 4.3844 -7.0819 0.4419 15 7 4.6550 -7.3584 1.8548 16 16 5.2012 -8.8521 2.3164 17 8 4.3487 -9.8017 1.6914 18 8 5.3975 -8.7906 3.7224 19 7 6.7005 -9.0552 1.6433 20 6 6.8482 -9.6641 0.3143 21 6 7.6764 -8.7174 -0.5676 22 6 9.0016 -8.4068 0.1318 23 6 8.7255 -7.7055 1.4638 24 6 7.9088 -8.6357 2.3663 25 6 2.1870 -5.8892 0.3312 26 6 1.4363 -4.7345 0.2291 27 1 -0.4850 0.8401 -0.0004 28 1 3.9525 -2.4847 -0.0002 29 1 5.2809 -4.5472 0.1944 30 1 5.3270 -6.9558 -0.0907 31 1 3.8307 -7.9146 0.0082 32 1 4.5143 -6.6666 2.5200 33 1 7.3590 -10.6227 0.4063 34 1 5.8644 -9.8133 -0.1307 35 1 7.1247 -7.7914 -0.7295 36 1 7.8746 -9.1958 -1.5267 37 1 9.6036 -7.7566 -0.5029 38 1 9.5417 -9.3356 0.3156 39 1 8.1639 -6.7890 1.2828 40 1 9.6703 -7.4637 1.9504 41 1 7.6250 -8.1060 3.2757 42 1 8.5044 -9.5120 2.6222 43 1 1.6948 -6.8464 0.4206 44 1 0.3576 -4.7883 0.2390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076008107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:06 Heat of formation + Delta-G solvation = -112.164091 kcal Electronic energy + Delta-G solvation = -27480.222737 eV Core-core repulsion = 23523.483360 eV Total energy + Delta-G solvation = -3956.739377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.82465 -39.28339 -38.71105 -38.36278 -36.97579 -35.85319 -34.24890 -33.31347 -31.93128 -31.81377 -30.93338 -27.58943 -25.91896 -25.38466 -24.14595 -23.63444 -22.22340 -21.49735 -20.08232 -19.85455 -19.10834 -18.88321 -18.40085 -17.39697 -16.52199 -16.47735 -16.22786 -15.75913 -15.54797 -15.53331 -15.29940 -15.23455 -15.00956 -14.58339 -14.51509 -14.41633 -14.31963 -13.91098 -13.54306 -13.50553 -13.47296 -13.21092 -12.98909 -12.94140 -12.89097 -12.45341 -12.35221 -12.16959 -12.10067 -12.08866 -11.79638 -11.41998 -11.29814 -11.18697 -10.80865 -10.45318 -9.98454 -9.79448 -8.98831 -8.48041 -6.16411 -0.46461 0.59174 0.63022 1.35724 1.44542 1.53196 1.92860 2.17370 2.54414 2.83891 3.15945 3.32073 3.50076 3.70513 3.85095 4.02873 4.05493 4.08354 4.19571 4.27436 4.32758 4.44644 4.46844 4.53101 4.59008 4.67523 4.80607 4.85709 4.87915 4.95052 5.04108 5.05879 5.12047 5.14739 5.28589 5.29084 5.30992 5.39078 5.54503 5.56924 5.66759 5.70505 5.76976 6.02009 6.08127 6.19602 6.96805 7.77139 8.75143 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.002543 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.704353 B =11007.824841 C =11728.955369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.251 1.251 7 C -0.413 4.413 8 H 0.105 0.895 9 O -0.232 6.232 10 C 0.120 3.880 11 C -0.244 4.244 12 C -0.044 4.044 13 C -0.175 4.175 14 C 0.179 3.821 15 N -1.119 6.119 16 S 2.802 3.198 17 O -1.006 7.006 18 O -1.010 7.010 19 N -1.001 6.001 20 C 0.112 3.888 21 C -0.136 4.136 22 C -0.116 4.116 23 C -0.134 4.134 24 C 0.117 3.883 25 C -0.052 4.052 26 C -0.208 4.208 27 H 0.273 0.727 28 H 0.121 0.879 29 H 0.149 0.851 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.420 0.580 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.142 0.858 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.318 -17.748 -0.085 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.174 1.174 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.138 6.138 10 C 0.069 3.931 11 C -0.263 4.263 12 C -0.063 4.063 13 C -0.177 4.177 14 C 0.055 3.945 15 N -0.881 5.881 16 S 2.811 3.189 17 O -0.989 6.989 18 O -0.995 6.995 19 N -0.843 5.843 20 C -0.013 4.013 21 C -0.175 4.175 22 C -0.153 4.153 23 C -0.173 4.173 24 C -0.008 4.008 25 C -0.071 4.071 26 C -0.228 4.228 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.166 0.834 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.255 0.745 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.160 0.840 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 20.467 -18.389 0.312 27.516 hybrid contribution -0.318 1.614 0.135 1.651 sum 20.149 -16.774 0.447 26.221 Atomic orbital electron populations 1.70194 1.08125 1.28837 1.48788 1.26611 0.96819 1.02846 0.95820 0.84581 0.77850 0.74478 0.79279 1.18739 1.19851 1.17437 1.21854 0.92617 0.81322 1.53126 0.87760 1.83950 1.36166 1.12712 1.80997 1.19987 0.91840 0.87790 0.93485 1.21277 0.92839 1.00318 1.11896 1.20985 1.00105 0.90375 0.94791 1.19546 0.93217 0.94728 1.10204 1.20052 0.99283 0.94761 0.80454 1.55908 1.83024 1.33263 1.15880 1.01154 0.72905 0.72926 0.71898 1.93563 1.65885 1.61288 1.78198 1.93568 1.86547 1.87280 1.32063 1.57922 1.21941 1.75207 1.29201 1.21739 1.01953 0.96826 0.80737 1.22039 0.96606 1.00002 0.98803 1.21461 0.96917 1.00980 0.95966 1.21923 1.00490 0.98372 0.96492 1.21572 0.85518 0.99347 0.94393 1.20934 0.93720 0.96805 0.95632 1.20444 0.99941 0.90667 1.11731 0.91846 0.86087 0.83374 0.88817 0.89741 0.74532 0.89957 0.89542 0.91326 0.89389 0.91177 0.91294 0.91694 0.89658 0.90016 0.90025 0.84032 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.12 13.67 21.61 0.30 -55.82 16 2 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 3 Si 1.02 41.88 29.55 68.60 2.03 43.91 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.41 -23.49 9.49 67.92 0.64 -22.85 16 8 H 0.11 5.36 5.20 -2.91 -0.02 5.35 16 9 O -0.23 -13.70 9.76 -22.76 -0.22 -13.92 16 10 C 0.12 5.75 6.65 22.58 0.15 5.90 16 11 C -0.24 -9.84 9.17 22.39 0.21 -9.63 16 12 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 13 C -0.17 -4.79 5.28 -19.83 -0.10 -4.89 16 14 C 0.18 3.50 6.37 85.63 0.55 4.05 16 15 N -1.12 -22.16 6.05 -190.80 -1.15 -23.31 16 16 S 2.80 60.54 6.15 -56.49 -0.35 60.19 16 17 O -1.01 -27.28 16.31 -128.00 -2.09 -29.37 16 18 O -1.01 -27.97 16.85 -128.00 -2.16 -30.13 16 19 N -1.00 -15.03 3.34 -512.27 -1.71 -16.74 16 20 C 0.11 1.32 6.41 86.51 0.55 1.87 16 21 C -0.14 -1.18 6.10 30.82 0.19 -0.99 16 22 C -0.12 -0.92 5.88 30.62 0.18 -0.74 16 23 C -0.13 -1.25 6.08 30.67 0.19 -1.07 16 24 C 0.12 1.44 6.37 86.36 0.55 1.99 16 25 C -0.05 -1.67 9.69 22.25 0.22 -1.45 16 26 C -0.21 -8.62 9.99 22.39 0.22 -8.40 16 27 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 28 H 0.12 4.97 5.64 -2.91 -0.02 4.95 16 29 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 30 H 0.09 1.32 6.89 -2.38 -0.02 1.31 16 31 H 0.08 1.60 7.69 -2.39 -0.02 1.58 16 32 H 0.42 8.38 8.64 -96.75 -0.84 7.54 16 33 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.09 1.10 7.12 -2.39 -0.02 1.09 16 35 H 0.07 0.64 6.95 -2.39 -0.02 0.63 16 36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.08 1.15 7.13 -2.39 -0.02 1.13 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 44 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -76.99 370.40 -0.95 -77.94 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.19 Total: 25.41 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 4.22 Total: -38.16 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -2.57 Total: -95.87 kcal Atomic # 8 Polarization: -68.95 SS G_CDS: -4.47 Total: -73.42 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 60.54 SS G_CDS: -0.35 Total: 60.19 kcal Total: -76.99 -0.95 -77.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076008107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.224 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds