Wall clock time and date at job start Tue Mar 31 2020 23:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00015 * 2 1 4 4 H 1.48497 * 109.47573 * 270.00813 * 3 2 1 5 5 H 1.48501 * 109.47056 * 30.00415 * 3 2 1 6 6 H 1.48501 * 109.47110 * 150.00254 * 3 2 1 7 7 C 1.37877 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00049 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00008 * 179.97438 * 7 2 1 10 10 C 1.52990 * 109.47218 * 179.97438 * 9 7 2 11 11 S 1.81407 * 109.47287 * 180.02562 * 10 9 7 12 12 O 1.42092 * 110.54408 * 68.37511 * 11 10 9 13 13 O 1.42102 * 110.54251 * 291.62536 * 11 10 9 14 14 N 1.65602 * 104.45072 * 180.02562 * 11 10 9 15 15 C 1.46493 * 120.00143 * 64.99636 * 14 11 10 16 16 C 1.50700 * 109.47324 * 165.00010 * 15 14 11 17 17 C 1.38828 * 120.75751 * 89.99665 * 16 15 14 18 18 C 1.38048 * 119.29043 * 180.02562 * 17 16 15 19 19 N 1.31970 * 120.83522 * 0.02562 * 18 17 16 20 20 C 1.32250 * 121.64704 * 359.97438 * 19 18 17 21 21 O 1.35675 * 119.68436 * 179.97438 * 20 19 18 22 22 C 1.42891 * 116.99950 * 0.02562 * 21 20 19 23 23 C 1.53780 * 113.61458 * 247.49290 * 22 21 20 24 24 C 1.53781 * 87.08448 * 220.01825 * 23 22 21 25 25 C 1.53779 * 87.07957 * 25.43376 * 24 23 22 26 26 C 1.38386 * 120.75821 * 270.26359 * 16 15 14 27 27 H 0.96997 * 119.99868 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46732 * 60.00158 * 9 7 2 29 29 H 1.08999 * 109.47321 * 300.00419 * 9 7 2 30 30 H 1.08997 * 109.47196 * 60.00446 * 10 9 7 31 31 H 1.09003 * 109.47213 * 299.99970 * 10 9 7 32 32 H 0.96997 * 119.99465 * 244.99577 * 14 11 10 33 33 H 1.09010 * 109.47233 * 45.00280 * 15 14 11 34 34 H 1.08999 * 109.47423 * 285.00239 * 15 14 11 35 35 H 1.07997 * 120.35496 * 0.02940 * 17 16 15 36 36 H 1.08001 * 119.58032 * 180.02562 * 18 17 16 37 37 H 1.09004 * 112.85615 * 18.80193 * 22 21 20 38 38 H 1.09003 * 113.61710 * 334.57394 * 23 22 21 39 39 H 1.09007 * 113.61087 * 105.47016 * 23 22 21 40 40 H 1.09002 * 113.61497 * 270.88312 * 24 23 22 41 41 H 1.08994 * 113.61233 * 139.98070 * 24 23 22 42 42 H 1.09004 * 113.61603 * 220.02034 * 25 24 23 43 43 H 1.08994 * 113.69148 * 89.12418 * 25 24 23 44 44 H 1.07994 * 120.44184 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 16 5.8356 -2.6366 -0.0009 12 8 6.3342 -2.1461 1.2360 13 8 6.3343 -2.1463 -1.2379 14 7 6.2488 -4.2402 -0.0015 15 6 5.9123 -5.0829 -1.1516 16 6 6.6971 -6.3674 -1.0799 17 6 6.1854 -7.4761 -0.4192 18 6 6.9303 -8.6373 -0.3717 19 7 8.1175 -8.7033 -0.9443 20 6 8.6385 -7.6689 -1.5826 21 8 9.8628 -7.7806 -2.1566 22 6 10.5254 -9.0404 -2.0312 23 6 11.7853 -8.9888 -1.1510 24 6 12.4423 -9.9317 -2.1727 25 6 11.4580 -9.3660 -3.2099 26 6 7.9466 -6.4672 -1.6663 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6805 0.8889 29 1 3.8746 -0.6800 -0.8911 30 1 3.6579 -3.1505 -0.8907 31 1 3.6585 -3.1502 0.8893 32 1 6.7136 -4.6215 0.7597 33 1 6.1609 -4.5563 -2.0731 34 1 4.8458 -5.3074 -1.1379 35 1 5.2149 -7.4306 0.0524 36 1 6.5366 -9.5027 0.1407 37 1 9.8453 -9.8529 -1.7752 38 1 12.2472 -8.0024 -1.1070 39 1 11.6492 -9.4377 -0.1670 40 1 12.2873 -10.9884 -1.9545 41 1 13.4843 -9.6903 -2.3826 42 1 11.0575 -10.1194 -3.8883 43 1 11.8291 -8.4828 -3.7298 44 1 8.3765 -5.6231 -2.1849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089776317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:10 Heat of formation + Delta-G solvation = -57.828578 kcal Electronic energy + Delta-G solvation = -26301.112225 eV Core-core repulsion = 22346.729012 eV Total energy + Delta-G solvation = -3954.383212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06570 -39.46042 -37.00603 -36.74407 -35.79893 -35.56462 -33.98277 -32.29537 -31.51311 -30.70876 -26.85052 -26.12714 -26.00884 -25.41265 -23.74117 -22.15929 -21.34391 -20.04521 -19.16609 -18.69634 -17.65135 -17.33732 -16.89308 -16.46899 -16.03890 -15.93481 -15.61227 -15.47296 -15.35209 -14.83417 -14.52613 -14.32702 -13.78054 -13.61146 -13.41567 -13.11865 -12.91290 -12.83155 -12.71247 -12.20776 -11.94078 -11.91838 -11.79174 -11.76335 -11.69425 -11.68406 -11.28190 -11.23035 -10.88560 -10.68081 -10.48028 -10.20390 -10.06230 -9.92188 -9.89564 -9.54447 -9.23980 -8.77690 -8.68399 -6.18821 -4.20312 0.49973 0.86441 0.94563 2.72167 2.96397 3.25154 3.32735 3.36677 3.48398 3.94428 4.05886 4.10903 4.12810 4.23150 4.33938 4.39704 4.46146 4.55247 4.63854 4.80264 4.84556 5.07384 5.12315 5.13741 5.23893 5.26285 5.29594 5.41467 5.43659 5.46900 5.47829 5.49192 5.54317 5.65385 5.71500 5.83053 6.02209 6.17628 6.24133 6.78436 6.86823 6.93798 7.00231 7.52240 7.53206 8.33781 8.81981 9.40799 10.93458 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027724 B = 0.002021 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.697291 B =13848.444742 C =14321.072860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.582 4.582 11 S 2.591 3.409 12 O -0.964 6.964 13 O -0.964 6.964 14 N -1.122 6.122 15 C 0.154 3.846 16 C -0.015 4.015 17 C -0.196 4.196 18 C 0.138 3.862 19 N -0.541 5.541 20 C 0.321 3.679 21 O -0.293 6.293 22 C 0.061 3.939 23 C -0.152 4.152 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.174 4.174 27 H 0.266 0.734 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.415 0.585 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.634 -22.018 -3.333 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.715 4.715 11 S 2.688 3.312 12 O -0.954 6.954 13 O -0.954 6.954 14 N -0.879 5.879 15 C 0.028 3.972 16 C -0.024 4.024 17 C -0.217 4.217 18 C -0.017 4.017 19 N -0.265 5.265 20 C 0.142 3.858 21 O -0.200 6.200 22 C 0.004 3.996 23 C -0.190 4.190 24 C -0.176 4.176 25 C -0.175 4.175 26 C -0.195 4.195 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.248 0.752 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.134 0.866 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 20.676 -21.679 -3.623 30.176 hybrid contribution -0.614 0.845 0.390 1.115 sum 20.062 -20.834 -3.233 29.104 Atomic orbital electron populations 1.69881 1.06207 1.27281 1.49915 1.24989 0.94828 0.99189 0.94116 0.86921 0.80691 0.83677 0.79134 1.19660 1.20764 1.18622 1.20840 0.87797 0.94908 1.52374 0.90398 1.19416 0.99924 0.87431 0.97935 1.30290 1.20950 1.09278 1.10981 1.05632 0.79124 0.72211 0.74233 1.93569 1.79204 1.77495 1.45143 1.93552 1.78423 1.77800 1.45628 1.55793 1.75185 1.29894 1.27042 1.20229 0.98566 0.88284 0.90120 1.20054 0.93236 0.95247 0.93908 1.21993 1.02758 0.93777 1.03166 1.22401 0.88147 0.97376 0.93777 1.67205 1.15184 1.30619 1.13465 1.19783 0.85885 0.89943 0.90151 1.86358 1.26692 1.36350 1.70622 1.24180 0.92073 0.85590 0.97718 1.23451 0.96100 1.00862 0.98608 1.22627 0.99157 0.99358 0.96506 1.23275 0.96050 1.01524 0.96641 1.21072 0.95341 0.97539 1.05544 0.92365 0.94902 0.95298 0.85651 0.85384 0.75156 0.88626 0.89755 0.83928 0.82166 0.86559 0.89191 0.90830 0.89681 0.90392 0.90614 0.88969 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.21 9.66 -34.44 -0.33 -14.54 16 8 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.18 4.05 -27.89 -0.11 -0.29 16 10 C -0.58 -9.93 6.01 37.15 0.22 -9.71 16 11 S 2.59 41.11 5.46 -107.50 -0.59 40.53 16 12 O -0.96 -18.25 18.08 -57.54 -1.04 -19.29 16 13 O -0.96 -17.91 17.49 -57.54 -1.01 -18.92 16 14 N -1.12 -12.77 5.88 -11.66 -0.07 -12.84 16 15 C 0.15 1.50 6.30 -5.20 -0.03 1.47 16 16 C -0.02 -0.15 5.31 -104.35 -0.55 -0.70 16 17 C -0.20 -1.59 9.81 -39.43 -0.39 -1.97 16 18 C 0.14 1.14 11.18 -17.56 -0.20 0.95 16 19 N -0.54 -5.58 8.59 -13.33 -0.11 -5.70 16 20 C 0.32 3.56 7.49 -17.12 -0.13 3.43 16 21 O -0.29 -3.19 10.13 -18.73 -0.19 -3.38 16 22 C 0.06 0.52 4.18 -25.92 -0.11 0.41 16 23 C -0.15 -1.10 7.91 -25.92 -0.21 -1.31 16 24 C -0.14 -0.76 8.08 -25.92 -0.21 -0.97 16 25 C -0.14 -0.91 7.91 -25.92 -0.21 -1.11 16 26 C -0.17 -1.84 9.75 -39.27 -0.38 -2.22 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 28 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 29 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 30 H 0.13 1.88 8.14 -51.93 -0.42 1.46 16 31 H 0.13 1.97 8.14 -51.92 -0.42 1.55 16 32 H 0.42 4.15 8.61 -34.47 -0.30 3.85 16 33 H 0.10 0.95 7.65 -51.92 -0.40 0.56 16 34 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.12 1.02 6.87 -51.93 -0.36 0.66 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -35.50 382.53 -10.34 -45.84 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.48 Total: 2.00 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -2.73 Total: -24.63 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.59 Total: -44.47 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -2.24 Total: -41.59 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 16 Polarization: 41.11 SS G_CDS: -0.59 Total: 40.53 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.50 -10.34 -45.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089776317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.990 kcal (2) G-P(sol) polarization free energy of solvation -35.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds