Wall clock time and date at job start Tue Mar 31 2020 23:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00015 * 2 1 4 4 H 1.48497 * 109.47573 * 270.00813 * 3 2 1 5 5 H 1.48501 * 109.47056 * 30.00415 * 3 2 1 6 6 H 1.48501 * 109.47110 * 150.00254 * 3 2 1 7 7 C 1.37877 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00049 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00008 * 179.97438 * 7 2 1 10 10 C 1.52990 * 109.47218 * 179.97438 * 9 7 2 11 11 S 1.81407 * 109.47287 * 180.02562 * 10 9 7 12 12 O 1.42092 * 110.54408 * 68.37511 * 11 10 9 13 13 O 1.42102 * 110.54251 * 291.62536 * 11 10 9 14 14 N 1.65602 * 104.45072 * 180.02562 * 11 10 9 15 15 C 1.46493 * 120.00143 * 64.99636 * 14 11 10 16 16 C 1.50700 * 109.47324 * 165.00010 * 15 14 11 17 17 C 1.38828 * 120.75751 * 89.99665 * 16 15 14 18 18 C 1.38048 * 119.29043 * 180.02562 * 17 16 15 19 19 N 1.31970 * 120.83522 * 0.02562 * 18 17 16 20 20 C 1.32250 * 121.64704 * 359.97438 * 19 18 17 21 21 O 1.35675 * 119.68436 * 179.97438 * 20 19 18 22 22 C 1.42891 * 116.99950 * 0.02562 * 21 20 19 23 23 C 1.53780 * 113.61458 * 247.49290 * 22 21 20 24 24 C 1.53781 * 87.08448 * 220.01825 * 23 22 21 25 25 C 1.53779 * 87.07957 * 25.43376 * 24 23 22 26 26 C 1.38386 * 120.75821 * 270.26359 * 16 15 14 27 27 H 0.96997 * 119.99868 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46732 * 60.00158 * 9 7 2 29 29 H 1.08999 * 109.47321 * 300.00419 * 9 7 2 30 30 H 1.08997 * 109.47196 * 60.00446 * 10 9 7 31 31 H 1.09003 * 109.47213 * 299.99970 * 10 9 7 32 32 H 0.96997 * 119.99465 * 244.99577 * 14 11 10 33 33 H 1.09010 * 109.47233 * 45.00280 * 15 14 11 34 34 H 1.08999 * 109.47423 * 285.00239 * 15 14 11 35 35 H 1.07997 * 120.35496 * 0.02940 * 17 16 15 36 36 H 1.08001 * 119.58032 * 180.02562 * 18 17 16 37 37 H 1.09004 * 112.85615 * 18.80193 * 22 21 20 38 38 H 1.09003 * 113.61710 * 334.57394 * 23 22 21 39 39 H 1.09007 * 113.61087 * 105.47016 * 23 22 21 40 40 H 1.09002 * 113.61497 * 270.88312 * 24 23 22 41 41 H 1.08994 * 113.61233 * 139.98070 * 24 23 22 42 42 H 1.09004 * 113.61603 * 220.02034 * 25 24 23 43 43 H 1.08994 * 113.69148 * 89.12418 * 25 24 23 44 44 H 1.07994 * 120.44184 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 16 5.8356 -2.6366 -0.0009 12 8 6.3342 -2.1461 1.2360 13 8 6.3343 -2.1463 -1.2379 14 7 6.2488 -4.2402 -0.0015 15 6 5.9123 -5.0829 -1.1516 16 6 6.6971 -6.3674 -1.0799 17 6 6.1854 -7.4761 -0.4192 18 6 6.9303 -8.6373 -0.3717 19 7 8.1175 -8.7033 -0.9443 20 6 8.6385 -7.6689 -1.5826 21 8 9.8628 -7.7806 -2.1566 22 6 10.5254 -9.0404 -2.0312 23 6 11.7853 -8.9888 -1.1510 24 6 12.4423 -9.9317 -2.1727 25 6 11.4580 -9.3660 -3.2099 26 6 7.9466 -6.4672 -1.6663 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6805 0.8889 29 1 3.8746 -0.6800 -0.8911 30 1 3.6579 -3.1505 -0.8907 31 1 3.6585 -3.1502 0.8893 32 1 6.7136 -4.6215 0.7597 33 1 6.1609 -4.5563 -2.0731 34 1 4.8458 -5.3074 -1.1379 35 1 5.2149 -7.4306 0.0524 36 1 6.5366 -9.5027 0.1407 37 1 9.8453 -9.8529 -1.7752 38 1 12.2472 -8.0024 -1.1070 39 1 11.6492 -9.4377 -0.1670 40 1 12.2873 -10.9884 -1.9545 41 1 13.4843 -9.6903 -2.3826 42 1 11.0575 -10.1194 -3.8883 43 1 11.8291 -8.4828 -3.7298 44 1 8.3765 -5.6231 -2.1849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089776317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:09 Heat of formation + Delta-G solvation = -84.663586 kcal Electronic energy + Delta-G solvation = -26302.275878 eV Core-core repulsion = 22346.729012 eV Total energy + Delta-G solvation = -3955.546865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.75991 -40.08836 -38.19247 -37.61375 -37.03866 -36.55713 -35.86245 -33.44120 -33.11329 -31.39111 -27.85421 -27.62458 -26.66712 -26.02598 -24.43066 -23.17810 -22.83829 -20.61880 -20.36681 -19.53721 -19.31319 -18.37265 -17.99890 -17.45506 -16.99572 -16.84094 -16.61830 -16.36573 -16.19545 -16.05148 -15.86059 -15.22667 -15.12169 -14.80631 -14.47384 -14.20116 -13.89975 -13.76862 -13.46195 -13.39607 -13.21848 -13.11291 -13.04983 -12.99648 -12.91524 -12.76355 -12.44341 -12.24163 -12.20646 -11.93008 -11.68876 -11.42176 -11.30385 -11.24078 -10.82607 -10.82043 -10.62956 -10.42693 -9.46976 -8.34382 -6.39448 -0.74190 0.11528 0.21110 1.33358 1.35842 1.45145 1.84667 2.05938 2.31215 2.74700 2.80047 3.00032 3.24303 3.30930 3.51136 3.58768 3.59877 3.86627 3.89054 3.92445 3.98048 4.12151 4.13811 4.17958 4.37792 4.49426 4.61740 4.65870 4.73680 4.74823 4.76418 4.78840 4.90359 4.95310 5.00446 5.10631 5.11736 5.16720 5.29082 5.33831 5.50324 5.55492 6.03092 6.19257 6.30720 6.67151 6.83672 7.24940 8.80886 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027724 B = 0.002021 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.697291 B =13848.444742 C =14321.072860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.013 3.987 3 Si 0.923 3.077 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.250 1.250 7 C -0.524 4.524 8 H 0.053 0.947 9 C -0.020 4.020 10 C -0.585 4.585 11 S 2.624 3.376 12 O -0.994 6.994 13 O -0.991 6.991 14 N -1.105 6.105 15 C 0.146 3.854 16 C -0.018 4.018 17 C -0.188 4.188 18 C 0.135 3.865 19 N -0.552 5.552 20 C 0.302 3.698 21 O -0.310 6.310 22 C 0.048 3.952 23 C -0.155 4.155 24 C -0.127 4.127 25 C -0.136 4.136 26 C -0.190 4.190 27 H 0.269 0.731 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.425 0.575 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.170 0.830 36 H 0.192 0.808 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.664 -23.311 -3.121 31.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.746 3.254 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.173 1.173 7 C -0.563 4.563 8 H 0.071 0.929 9 C -0.059 4.059 10 C -0.717 4.717 11 S 2.721 3.279 12 O -0.984 6.984 13 O -0.980 6.980 14 N -0.866 5.866 15 C 0.020 3.980 16 C -0.027 4.027 17 C -0.209 4.209 18 C -0.020 4.020 19 N -0.276 5.276 20 C 0.124 3.876 21 O -0.218 6.218 22 C -0.008 4.008 23 C -0.192 4.192 24 C -0.164 4.164 25 C -0.173 4.173 26 C -0.212 4.212 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.261 0.739 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.187 0.813 36 H 0.209 0.791 37 H 0.130 0.870 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 21.718 -22.977 -3.409 31.800 hybrid contribution -0.961 1.083 0.326 1.484 sum 20.756 -21.894 -3.083 30.326 Atomic orbital electron populations 1.70007 1.07835 1.28275 1.51846 1.25854 0.95601 1.02931 0.94162 0.86055 0.79932 0.79630 0.79793 1.18625 1.20186 1.17328 1.21195 0.90276 0.93889 1.50984 0.92885 1.19392 0.97176 0.91463 0.97898 1.30264 1.22444 1.05966 1.13036 1.04390 0.77924 0.72805 0.72814 1.93525 1.79478 1.78976 1.46443 1.93521 1.78581 1.79143 1.46783 1.55318 1.74753 1.28515 1.28050 1.20495 1.00299 0.88037 0.89126 1.20050 0.92800 0.95594 0.94276 1.22300 1.03570 0.92942 1.02046 1.22998 0.87408 0.98566 0.93068 1.67255 1.16173 1.30493 1.13706 1.19955 0.86230 0.90435 0.90934 1.86332 1.26980 1.37568 1.70922 1.24419 0.92274 0.84782 0.99298 1.23458 0.95758 1.01031 0.98984 1.22626 0.99346 0.99590 0.94859 1.23292 0.95847 1.01661 0.96533 1.21166 0.96147 0.97478 1.06391 0.92225 0.95085 0.94987 0.83535 0.83691 0.73940 0.88950 0.86937 0.81255 0.79133 0.87011 0.89955 0.90783 0.88404 0.89308 0.89732 0.89389 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.87 13.96 21.45 0.30 -56.57 16 2 C 0.01 0.74 5.47 84.65 0.46 1.20 16 3 Si 0.92 43.22 27.47 68.60 1.88 45.10 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 7 C -0.52 -28.65 9.66 25.60 0.25 -28.41 16 8 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 9 C -0.02 -0.90 4.05 29.84 0.12 -0.78 16 10 C -0.59 -18.82 6.01 71.98 0.43 -18.39 16 11 S 2.62 78.51 5.46 -56.49 -0.31 78.21 16 12 O -0.99 -36.14 18.08 -127.65 -2.31 -38.45 16 13 O -0.99 -35.38 17.49 -127.65 -2.23 -37.61 16 14 N -1.11 -22.57 5.88 -190.80 -1.12 -23.69 16 15 C 0.15 2.48 6.30 85.63 0.54 3.02 16 16 C -0.02 -0.31 5.31 -19.69 -0.10 -0.41 16 17 C -0.19 -2.49 9.81 22.37 0.22 -2.27 16 18 C 0.13 1.90 11.18 84.63 0.95 2.85 16 19 N -0.55 -10.80 8.59 -308.94 -2.65 -13.45 16 20 C 0.30 6.65 7.49 84.79 0.63 7.29 16 21 O -0.31 -6.90 10.13 -89.92 -0.91 -7.81 16 22 C 0.05 0.82 4.18 31.12 0.13 0.95 16 23 C -0.15 -2.17 7.91 31.12 0.25 -1.92 16 24 C -0.13 -1.22 8.08 31.12 0.25 -0.97 16 25 C -0.14 -1.70 7.91 31.12 0.25 -1.45 16 26 C -0.19 -3.94 9.75 22.47 0.22 -3.72 16 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.03 1.39 7.20 -2.38 -0.02 1.37 16 29 H 0.03 1.40 7.57 -2.39 -0.02 1.39 16 30 H 0.15 4.03 8.14 -2.39 -0.02 4.01 16 31 H 0.14 4.14 8.14 -2.39 -0.02 4.12 16 32 H 0.42 7.45 8.61 -96.75 -0.83 6.62 16 33 H 0.09 1.68 7.65 -2.38 -0.02 1.66 16 34 H 0.11 1.32 8.10 -2.39 -0.02 1.30 16 35 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.11 1.94 6.87 -2.39 -0.02 1.93 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -77.06 382.53 -2.64 -79.70 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.12 Total: 17.59 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 4.59 Total: -43.01 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -3.48 Total: -93.71 kcal Atomic # 8 Polarization: -78.42 SS G_CDS: -5.45 Total: -83.87 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.10 kcal Atomic # 16 Polarization: 78.51 SS G_CDS: -0.31 Total: 78.21 kcal Total: -77.06 -2.64 -79.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089776317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.965 kcal (2) G-P(sol) polarization free energy of solvation -77.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds