Wall clock time and date at job start Tue Mar 31 2020 23:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34070 * 126.83307 * 2 1 4 4 N 1.21269 * 113.34071 * 179.97438 * 3 2 1 5 5 C 1.30085 * 111.76321 * 359.97438 * 4 3 2 6 6 C 1.35738 * 126.83715 * 179.97438 * 2 1 3 7 7 C 1.46521 * 138.43024 * 359.97438 * 6 2 1 8 8 C 1.48129 * 120.18538 * 0.02562 * 7 6 2 9 9 C 1.39467 * 120.13434 * 311.56387 * 8 7 6 10 10 C 1.37984 * 119.86875 * 179.72150 * 9 8 7 11 11 C 1.38351 * 120.12771 * 0.55172 * 10 9 8 12 12 C 1.38342 * 120.27354 * 359.72351 * 11 10 9 13 13 C 1.37985 * 120.13220 * 359.97438 * 12 11 10 14 14 N 1.30859 * 119.63444 * 180.02562 * 7 6 2 15 15 N 1.39289 * 123.34486 * 359.97438 * 14 7 6 16 16 C 1.46497 * 118.57147 * 180.02562 * 15 14 7 17 17 N 1.46499 * 109.47252 * 75.00430 * 16 15 14 18 18 C 1.46498 * 119.99963 * 269.99996 * 17 16 15 19 19 C 1.36932 * 119.99778 * 89.99869 * 17 16 15 20 20 H 1.08004 * 120.00107 * 22.43345 * 19 17 16 21 21 C 1.38806 * 119.99831 * 202.42726 * 19 17 16 22 22 N 1.31619 * 120.00304 * 11.75901 * 21 19 17 23 23 Si 1.86804 * 120.00284 * 191.75347 * 21 19 17 24 24 H 1.48501 * 109.47064 * 89.99914 * 23 21 19 25 25 H 1.48499 * 109.47617 * 210.00571 * 23 21 19 26 26 H 1.48501 * 109.46927 * 330.00620 * 23 21 19 27 27 C 1.34921 * 122.85674 * 0.03399 * 15 14 7 28 28 O 1.21700 * 120.62510 * 179.97438 * 27 15 14 29 29 H 1.08999 * 109.47212 * 5.58943 * 1 2 3 30 30 H 1.09001 * 109.47081 * 125.58918 * 1 2 3 31 31 H 1.09007 * 109.47092 * 245.58516 * 1 2 3 32 32 H 1.08007 * 120.06603 * 359.97438 * 9 8 7 33 33 H 1.08004 * 119.93745 * 180.27723 * 10 9 8 34 34 H 1.08006 * 119.86143 * 179.69857 * 11 10 9 35 35 H 1.07998 * 119.93222 * 180.02562 * 12 11 10 36 36 H 1.08001 * 120.06807 * 180.02562 * 13 12 11 37 37 H 1.09005 * 109.46973 * 195.00664 * 16 15 14 38 38 H 1.09008 * 109.47406 * 315.00157 * 16 15 14 39 39 H 1.08994 * 109.47076 * 86.99529 * 18 17 16 40 40 H 1.09003 * 109.47078 * 206.99626 * 18 17 16 41 41 H 1.09000 * 109.47198 * 326.99211 * 18 17 16 42 42 H 0.96997 * 120.00337 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3108 1.0731 0.0000 4 7 3.4900 0.7901 0.0005 5 6 3.6771 -0.4972 0.0015 6 6 2.3208 -1.0864 0.0005 7 6 2.2000 -2.5466 0.0016 8 6 0.8624 -3.1832 0.0019 9 6 -0.1138 -2.7608 0.9040 10 6 -1.3597 -3.3538 0.8957 11 6 -1.6377 -4.3731 0.0025 12 6 -0.6718 -4.8003 -0.8909 13 6 0.5759 -4.2109 -0.8963 14 7 3.2801 -3.2853 0.0022 15 7 4.5689 -2.7570 0.0014 16 6 5.7052 -3.6817 0.0017 17 7 5.8579 -4.2681 -1.3321 18 6 5.1608 -5.5116 -1.6698 19 6 6.6522 -3.6539 -2.2631 20 1 7.4314 -2.9767 -1.9458 21 6 6.4561 -3.9018 -3.6147 22 7 5.3749 -4.5351 -4.0176 23 14 7.7266 -3.3365 -4.8621 24 1 8.7324 -4.4099 -5.0654 25 1 7.0547 -3.0368 -6.1521 26 1 8.4027 -2.1133 -4.3603 27 6 4.8164 -1.4307 0.0006 28 8 5.9596 -1.0133 0.0003 29 1 -0.3633 1.0228 -0.1001 30 1 -0.3633 -0.5981 -0.8357 31 1 -0.3634 -0.4248 0.9358 32 1 0.1037 -1.9685 1.6050 33 1 -2.1179 -3.0245 1.5908 34 1 -2.6129 -4.8375 0.0031 35 1 -0.8949 -5.5962 -1.5860 36 1 1.3291 -4.5450 -1.5945 37 1 6.6137 -3.1410 0.2671 38 1 5.5286 -4.4743 0.7290 39 1 4.1603 -5.2796 -2.0346 40 1 5.7163 -6.0408 -2.4441 41 1 5.0873 -6.1396 -0.7819 42 1 5.2376 -4.7080 -4.9621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101536389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:30 Heat of formation + Delta-G solvation = 137.042685 kcal Electronic energy + Delta-G solvation = -29829.026501 eV Core-core repulsion = 25779.942340 eV Total energy + Delta-G solvation = -4049.084160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.85780 -39.80896 -39.10034 -36.69163 -35.78497 -33.98756 -33.30760 -32.46580 -31.21115 -30.94942 -29.68682 -28.05975 -26.56868 -25.98335 -24.79834 -23.99494 -22.73637 -22.36395 -21.14453 -20.16198 -18.75089 -18.07059 -17.83691 -17.09758 -16.83684 -16.00904 -15.62418 -15.39267 -15.36002 -14.74840 -14.58332 -14.33886 -14.07351 -13.69577 -13.55600 -13.34815 -13.26838 -13.02480 -12.92018 -12.59267 -12.13293 -12.06591 -11.58727 -11.50233 -11.26816 -11.10155 -11.02551 -10.85202 -10.66762 -10.43974 -10.31671 -10.14908 -10.10288 -9.67080 -9.60013 -8.99354 -8.97212 -8.73413 -7.84037 -7.17131 -5.98850 -3.43040 0.72719 1.21673 1.36139 1.40344 2.44257 2.58047 2.86197 3.31378 3.36119 3.40442 3.53187 3.62849 3.83820 4.10347 4.27864 4.35524 4.60205 4.81775 4.89808 5.01530 5.12492 5.20199 5.25275 5.35568 5.36363 5.38841 5.42999 5.47505 5.56840 5.76218 5.87212 5.92000 5.99546 6.18406 6.29056 6.42106 6.49804 6.57345 6.63086 6.79814 6.89552 7.24319 7.56824 7.68386 7.97004 8.14275 8.28218 8.51110 8.98293 9.55043 10.01599 11.05028 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.004541 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.248986 B = 6164.600313 C = 7584.809212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.009 3.991 3 O 0.113 5.887 4 N -0.290 5.290 5 C -0.022 4.022 6 C -0.186 4.186 7 C 0.176 3.824 8 C -0.020 4.020 9 C -0.102 4.102 10 C -0.124 4.124 11 C -0.114 4.114 12 C -0.119 4.119 13 C -0.077 4.077 14 N -0.194 5.194 15 N -0.411 5.411 16 C 0.343 3.657 17 N -0.555 5.555 18 C 0.155 3.845 19 C -0.268 4.268 20 H 0.080 0.920 21 C 0.012 3.988 22 N -0.894 5.894 23 Si 0.911 3.089 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.275 1.275 27 C 0.565 3.435 28 O -0.506 6.506 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.028 0.972 40 H 0.064 0.936 41 H 0.005 0.995 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.930 1.792 9.759 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 O 0.042 5.958 4 N 0.009 4.991 5 C -0.187 4.187 6 C -0.194 4.194 7 C -0.010 4.010 8 C -0.023 4.023 9 C -0.121 4.121 10 C -0.142 4.142 11 C -0.132 4.132 12 C -0.137 4.137 13 C -0.097 4.097 14 N -0.004 5.004 15 N -0.239 5.239 16 C 0.136 3.864 17 N -0.272 5.272 18 C 0.011 3.989 19 C -0.398 4.398 20 H 0.098 0.902 21 C -0.188 4.188 22 N -0.536 5.536 23 Si 0.740 3.260 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.200 1.200 27 C 0.350 3.650 28 O -0.378 6.378 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.023 0.977 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.820 2.023 9.532 18.580 hybrid contribution 0.104 0.640 -1.033 1.219 sum -15.717 2.663 8.499 18.065 Atomic orbital electron populations 1.20662 0.82839 1.04890 1.04892 1.23829 0.95744 0.84959 1.01159 1.84911 1.10903 1.33324 1.66657 1.73716 0.95153 1.15169 1.15082 1.24788 0.96790 0.90594 1.06516 1.21241 0.92071 0.95362 1.10699 1.20379 0.92263 0.85584 1.02752 1.18047 0.89592 0.97000 0.97624 1.21205 0.92947 0.99981 0.98013 1.20982 0.96448 0.97251 0.99556 1.21236 0.99279 0.97021 0.95683 1.21133 0.93209 1.00142 0.99243 1.21425 0.96977 0.93813 0.97477 1.74524 0.90252 1.27724 1.07938 1.53059 1.02876 1.04253 1.63738 1.22227 0.85962 0.89074 0.89141 1.44989 1.49611 1.22027 1.10612 1.20989 0.96886 0.85296 0.95733 1.19493 1.09005 1.25013 0.86334 0.90200 1.25166 0.96897 0.99247 0.97538 1.70087 1.24864 1.43503 1.15150 0.86137 0.80619 0.78853 0.80371 1.20849 1.21453 1.19992 1.17802 0.86536 0.82749 0.77914 1.90830 1.21692 1.76959 1.48316 0.89495 0.88466 0.88347 0.85695 0.85776 0.86088 0.85647 0.84890 0.88299 0.90605 0.95321 0.91758 0.97689 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 8.70 36.01 0.31 -0.26 16 2 C 0.01 0.12 7.50 -35.20 -0.26 -0.14 16 3 O 0.11 1.72 11.10 17.00 0.19 1.90 16 4 N -0.29 -5.57 12.07 34.13 0.41 -5.15 16 5 C -0.02 -0.46 7.82 -80.99 -0.63 -1.09 16 6 C -0.19 -3.12 6.26 -103.51 -0.65 -3.77 16 7 C 0.18 2.98 6.59 -80.88 -0.53 2.44 16 8 C -0.02 -0.27 5.52 -104.92 -0.58 -0.85 16 9 C -0.10 -1.00 7.17 -39.22 -0.28 -1.29 16 10 C -0.12 -1.00 10.03 -39.63 -0.40 -1.40 16 11 C -0.11 -0.96 10.04 -39.50 -0.40 -1.36 16 12 C -0.12 -1.23 10.03 -39.64 -0.40 -1.63 16 13 C -0.08 -1.03 9.71 -39.21 -0.38 -1.41 16 14 N -0.19 -3.85 11.17 34.45 0.38 -3.47 16 15 N -0.41 -9.05 3.74 -64.57 -0.24 -9.30 16 16 C 0.34 7.52 6.38 -63.75 -0.41 7.11 16 17 N -0.55 -13.95 3.16 -184.86 -0.58 -14.54 16 18 C 0.16 3.70 9.04 59.85 0.54 4.24 16 19 C -0.27 -7.48 9.67 -15.06 -0.15 -7.62 16 20 H 0.08 2.27 7.85 -52.48 -0.41 1.86 16 21 C 0.01 0.34 5.08 -17.43 -0.09 0.25 16 22 N -0.89 -25.40 10.65 55.49 0.59 -24.81 16 23 Si 0.91 22.18 29.57 -169.99 -5.03 17.15 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 27 C 0.56 13.17 7.73 -12.52 -0.10 13.07 16 28 O -0.51 -13.06 16.45 5.19 0.09 -12.97 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.72 8.06 -51.93 -0.42 0.30 16 31 H 0.10 0.55 5.61 -51.93 -0.29 0.26 16 32 H 0.13 1.04 6.30 -52.48 -0.33 0.71 16 33 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 34 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 37 H 0.10 2.20 6.84 -51.93 -0.35 1.85 16 38 H 0.08 1.44 7.92 -51.92 -0.41 1.03 16 39 H 0.03 0.73 7.81 -51.93 -0.41 0.32 16 40 H 0.06 1.65 6.70 -51.93 -0.35 1.30 16 41 H 0.00 0.10 7.93 -51.93 -0.41 -0.32 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -34.02 360.21 -7.79 -41.82 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.63 Total: -2.37 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -4.40 Total: 6.30 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.56 Total: -57.26 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.27 Total: -11.07 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.02 -7.79 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101536389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.859 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds