Wall clock time and date at job start Tue Mar 31 2020 22:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99697 * 2 1 4 4 H 1.48502 * 109.46718 * 269.99751 * 3 2 1 5 5 H 1.48493 * 109.47110 * 29.99770 * 3 2 1 6 6 H 1.48501 * 109.46589 * 149.99841 * 3 2 1 7 7 C 1.37872 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00245 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00256 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47379 * 180.02562 * 9 7 2 11 11 S 1.81404 * 109.47179 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54080 * 68.37744 * 11 10 9 13 13 O 1.42088 * 110.54374 * 291.62341 * 11 10 9 14 14 N 1.65603 * 104.44617 * 179.97438 * 11 10 9 15 15 C 1.46495 * 120.00270 * 270.00083 * 14 11 10 16 16 C 1.53004 * 109.47074 * 265.00479 * 15 14 11 17 17 C 1.50698 * 109.47304 * 180.02562 * 16 15 14 18 18 N 1.34773 * 120.00537 * 179.97438 * 17 16 15 19 19 O 1.21281 * 119.99976 * 359.97438 * 17 16 15 20 20 C 1.46497 * 119.99696 * 90.00629 * 14 11 10 21 21 C 1.50707 * 109.47012 * 264.99410 * 20 14 11 22 22 C 1.38238 * 119.99792 * 90.00154 * 21 20 14 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.98090 * 21 20 14 27 27 H 0.96997 * 120.00442 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47109 * 59.99998 * 9 7 2 29 29 H 1.09005 * 109.47224 * 299.99854 * 9 7 2 30 30 H 1.08999 * 109.47061 * 59.99896 * 10 9 7 31 31 H 1.08999 * 109.47153 * 300.00150 * 10 9 7 32 32 H 1.09003 * 109.47348 * 25.00296 * 15 14 11 33 33 H 1.08999 * 109.47483 * 145.00192 * 15 14 11 34 34 H 1.09004 * 109.47087 * 299.99596 * 16 15 14 35 35 H 1.08993 * 109.47548 * 59.99780 * 16 15 14 36 36 H 0.97003 * 119.99735 * 0.02562 * 18 17 16 37 37 H 0.96999 * 120.00403 * 179.97438 * 18 17 16 38 38 H 1.09005 * 109.47643 * 144.99871 * 20 14 11 39 39 H 1.09000 * 109.47513 * 24.99035 * 20 14 11 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6364 0.0010 11 16 5.8356 -2.6364 0.0009 12 8 6.3342 -2.1461 1.2380 13 8 6.3341 -2.1460 -1.2359 14 7 6.2488 -4.2400 0.0015 15 6 6.4316 -4.9489 1.2704 16 6 7.9139 -4.9425 1.6492 17 6 8.1021 -5.6723 2.9542 18 7 9.3342 -5.7941 3.4867 19 8 7.1448 -6.1501 3.5254 20 6 6.4316 -4.9497 -1.2670 21 6 5.1504 -5.6502 -1.6399 22 6 4.2040 -4.9975 -2.4075 23 6 3.0290 -5.6402 -2.7500 24 6 2.8007 -6.9358 -2.3254 25 6 3.7447 -7.5865 -1.5533 26 6 4.9217 -6.9455 -1.2147 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8752 -0.6803 -0.8889 30 1 3.6586 -3.1501 -0.8892 31 1 3.6579 -3.1505 0.8907 32 1 5.8551 -4.4519 2.0507 33 1 6.0880 -5.9780 1.1646 34 1 8.4905 -5.4396 0.8691 35 1 8.2575 -3.9136 1.7551 36 1 10.0998 -5.4117 3.0302 37 1 9.4552 -6.2635 4.3269 38 1 7.2297 -5.6846 -1.1605 39 1 6.6961 -4.2365 -2.0476 40 1 4.3826 -3.9855 -2.7397 41 1 2.2895 -5.1302 -3.3494 42 1 1.8829 -7.4380 -2.5933 43 1 3.5644 -8.5971 -1.2178 44 1 5.6614 -7.4557 -0.6155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111326242.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:19 Heat of formation + Delta-G solvation = -92.855219 kcal Electronic energy + Delta-G solvation = -28108.165858 eV Core-core repulsion = 24152.263777 eV Total energy + Delta-G solvation = -3955.902081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.77908 -39.30676 -36.84370 -36.57194 -35.58458 -33.93828 -33.89281 -32.32883 -31.47735 -30.86703 -30.09283 -26.34937 -25.84539 -23.81122 -22.51940 -21.51330 -21.00821 -20.57704 -18.64751 -17.78414 -17.63417 -17.10992 -16.94883 -16.67428 -16.00772 -15.65837 -15.48932 -15.08368 -14.98118 -14.70906 -14.30167 -13.90410 -13.62953 -13.52148 -13.40016 -13.25298 -12.82505 -12.64514 -12.54272 -12.31238 -11.89175 -11.82902 -11.76210 -11.46696 -11.33555 -11.22673 -11.18108 -11.02252 -10.91919 -10.43036 -10.21738 -10.15460 -9.93743 -9.74433 -9.42072 -9.00979 -8.86746 -8.78434 -8.64507 -6.14454 -4.15370 0.58417 1.31262 1.42681 2.44893 2.81082 3.26820 3.34354 3.36230 3.38377 3.82291 4.11548 4.37066 4.43123 4.54526 4.66160 4.76646 4.86114 4.91012 5.02595 5.05632 5.16594 5.16957 5.26927 5.44903 5.49103 5.55736 5.57914 5.60300 5.67113 5.88121 5.95633 6.00316 6.07546 6.31415 6.46040 6.48752 6.51667 6.56418 6.60955 6.83537 6.95063 7.01180 7.05331 7.56576 8.03387 8.39423 8.87642 9.45204 10.97985 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009079 B = 0.004469 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.389251 B = 6263.635833 C = 8188.086643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.516 4.516 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.583 4.583 11 S 2.581 3.419 12 O -0.962 6.962 13 O -0.963 6.963 14 N -0.998 5.998 15 C 0.141 3.859 16 C -0.165 4.165 17 C 0.523 3.477 18 N -0.859 5.859 19 O -0.542 6.542 20 C 0.154 3.846 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.111 4.111 24 C -0.116 4.116 25 C -0.123 4.123 26 C -0.104 4.104 27 H 0.266 0.734 28 H 0.031 0.969 29 H 0.027 0.973 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.401 0.599 37 H 0.400 0.600 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.457 -15.852 -1.716 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.693 3.307 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.555 4.555 8 H 0.096 0.904 9 C -0.045 4.045 10 C -0.716 4.716 11 S 2.680 3.320 12 O -0.952 6.952 13 O -0.954 6.954 14 N -0.832 5.832 15 C 0.015 3.985 16 C -0.207 4.207 17 C 0.308 3.692 18 N -0.423 5.423 19 O -0.418 6.418 20 C 0.029 3.971 21 C -0.115 4.115 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.141 4.141 26 C -0.123 4.123 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.230 0.770 37 H 0.231 0.769 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.236 -15.264 -1.492 23.071 hybrid contribution 0.119 0.474 0.174 0.518 sum 17.354 -14.791 -1.317 22.840 Atomic orbital electron populations 1.69878 1.06178 1.27186 1.50098 1.24971 0.94793 0.99055 0.94205 0.86957 0.80747 0.83854 0.79096 1.19670 1.20744 1.18662 1.20834 0.87736 0.94902 1.52058 0.90366 1.19404 1.00007 0.87384 0.97679 1.30400 1.20893 1.09067 1.11283 1.05958 0.79389 0.72429 0.74218 1.93547 1.78883 1.77682 1.45083 1.93525 1.78976 1.77661 1.45197 1.57793 1.84955 1.29812 1.10590 1.20913 0.93996 0.99338 0.84302 1.22144 1.00637 1.02900 0.95005 1.20590 0.82784 0.79020 0.86846 1.43898 1.09403 1.60948 1.28003 1.90771 1.39765 1.48357 1.62924 1.20289 0.94169 0.97069 0.85568 1.20312 0.97309 0.95045 0.98816 1.21260 0.93869 1.00097 0.97859 1.21229 0.97105 0.94868 0.99704 1.21196 0.99086 0.95165 0.98020 1.21127 0.94269 0.99962 0.98721 1.20986 0.97516 0.94416 0.99374 0.92414 0.95052 0.95528 0.85456 0.85573 0.89005 0.89485 0.88394 0.87585 0.77036 0.76928 0.89389 0.87711 0.85452 0.85590 0.86157 0.86248 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.51 9.66 -34.44 -0.33 -14.85 16 8 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 9 C -0.01 -0.13 4.05 -27.89 -0.11 -0.24 16 10 C -0.58 -11.16 6.12 37.16 0.23 -10.93 16 11 S 2.58 44.18 5.37 -107.50 -0.58 43.61 16 12 O -0.96 -18.50 16.74 -57.54 -0.96 -19.47 16 13 O -0.96 -17.99 16.53 -57.54 -0.95 -18.94 16 14 N -1.00 -12.70 2.70 -115.66 -0.31 -13.01 16 15 C 0.14 1.67 4.54 -4.04 -0.02 1.65 16 16 C -0.17 -1.58 6.02 -27.88 -0.17 -1.75 16 17 C 0.52 5.47 8.10 -10.99 -0.09 5.39 16 18 N -0.86 -5.47 8.87 31.22 0.28 -5.19 16 19 O -0.54 -7.97 16.82 5.56 0.09 -7.88 16 20 C 0.15 1.65 5.78 -5.19 -0.03 1.62 16 21 C -0.11 -1.32 5.46 -104.62 -0.57 -1.89 16 22 C -0.11 -1.46 8.01 -39.58 -0.32 -1.78 16 23 C -0.11 -1.40 10.05 -39.58 -0.40 -1.80 16 24 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 25 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 26 C -0.10 -1.10 9.37 -39.58 -0.37 -1.47 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 29 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 30 H 0.13 2.28 5.88 -51.92 -0.31 1.97 16 31 H 0.13 2.29 8.14 -51.93 -0.42 1.87 16 32 H 0.09 1.25 7.56 -51.93 -0.39 0.86 16 33 H 0.09 0.93 7.56 -51.93 -0.39 0.54 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.11 1.07 7.90 -51.93 -0.41 0.66 16 36 H 0.40 1.37 8.83 -40.82 -0.36 1.01 16 37 H 0.40 2.19 8.93 -40.82 -0.36 1.83 16 38 H 0.09 0.67 8.05 -51.93 -0.42 0.26 16 39 H 0.10 1.17 6.76 -51.93 -0.35 0.81 16 40 H 0.13 1.68 7.69 -52.48 -0.40 1.27 16 41 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.12 1.02 7.90 -52.49 -0.41 0.61 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -36.75 380.52 -9.95 -46.70 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.28 Total: 5.42 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -3.07 Total: -27.46 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.74 Total: -44.58 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -1.82 Total: -46.29 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 44.18 SS G_CDS: -0.58 Total: 43.61 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.75 -9.95 -46.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111326242.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.159 kcal (2) G-P(sol) polarization free energy of solvation -36.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds