Wall clock time and date at job start Tue Mar 31 2020 22:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99697 * 2 1 4 4 H 1.48502 * 109.46718 * 269.99751 * 3 2 1 5 5 H 1.48493 * 109.47110 * 29.99770 * 3 2 1 6 6 H 1.48501 * 109.46589 * 149.99841 * 3 2 1 7 7 C 1.37872 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00245 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00256 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47379 * 180.02562 * 9 7 2 11 11 S 1.81404 * 109.47179 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54080 * 68.37744 * 11 10 9 13 13 O 1.42088 * 110.54374 * 291.62341 * 11 10 9 14 14 N 1.65603 * 104.44617 * 179.97438 * 11 10 9 15 15 C 1.46495 * 120.00270 * 270.00083 * 14 11 10 16 16 C 1.53004 * 109.47074 * 265.00479 * 15 14 11 17 17 C 1.50698 * 109.47304 * 180.02562 * 16 15 14 18 18 N 1.34773 * 120.00537 * 179.97438 * 17 16 15 19 19 O 1.21281 * 119.99976 * 359.97438 * 17 16 15 20 20 C 1.46497 * 119.99696 * 90.00629 * 14 11 10 21 21 C 1.50707 * 109.47012 * 264.99410 * 20 14 11 22 22 C 1.38238 * 119.99792 * 90.00154 * 21 20 14 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.98090 * 21 20 14 27 27 H 0.96997 * 120.00442 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47109 * 59.99998 * 9 7 2 29 29 H 1.09005 * 109.47224 * 299.99854 * 9 7 2 30 30 H 1.08999 * 109.47061 * 59.99896 * 10 9 7 31 31 H 1.08999 * 109.47153 * 300.00150 * 10 9 7 32 32 H 1.09003 * 109.47348 * 25.00296 * 15 14 11 33 33 H 1.08999 * 109.47483 * 145.00192 * 15 14 11 34 34 H 1.09004 * 109.47087 * 299.99596 * 16 15 14 35 35 H 1.08993 * 109.47548 * 59.99780 * 16 15 14 36 36 H 0.97003 * 119.99735 * 0.02562 * 18 17 16 37 37 H 0.96999 * 120.00403 * 179.97438 * 18 17 16 38 38 H 1.09005 * 109.47643 * 144.99871 * 20 14 11 39 39 H 1.09000 * 109.47513 * 24.99035 * 20 14 11 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6364 0.0010 11 16 5.8356 -2.6364 0.0009 12 8 6.3342 -2.1461 1.2380 13 8 6.3341 -2.1460 -1.2359 14 7 6.2488 -4.2400 0.0015 15 6 6.4316 -4.9489 1.2704 16 6 7.9139 -4.9425 1.6492 17 6 8.1021 -5.6723 2.9542 18 7 9.3342 -5.7941 3.4867 19 8 7.1448 -6.1501 3.5254 20 6 6.4316 -4.9497 -1.2670 21 6 5.1504 -5.6502 -1.6399 22 6 4.2040 -4.9975 -2.4075 23 6 3.0290 -5.6402 -2.7500 24 6 2.8007 -6.9358 -2.3254 25 6 3.7447 -7.5865 -1.5533 26 6 4.9217 -6.9455 -1.2147 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8752 -0.6803 -0.8889 30 1 3.6586 -3.1501 -0.8892 31 1 3.6579 -3.1505 0.8907 32 1 5.8551 -4.4519 2.0507 33 1 6.0880 -5.9780 1.1646 34 1 8.4905 -5.4396 0.8691 35 1 8.2575 -3.9136 1.7551 36 1 10.0998 -5.4117 3.0302 37 1 9.4552 -6.2635 4.3269 38 1 7.2297 -5.6846 -1.1605 39 1 6.6961 -4.2365 -2.0476 40 1 4.3826 -3.9855 -2.7397 41 1 2.2895 -5.1302 -3.3494 42 1 1.8829 -7.4380 -2.5933 43 1 3.5644 -8.5971 -1.2178 44 1 5.6614 -7.4557 -0.6155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111326242.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:18 Heat of formation + Delta-G solvation = -121.122795 kcal Electronic energy + Delta-G solvation = -28109.391632 eV Core-core repulsion = 24152.263777 eV Total energy + Delta-G solvation = -3957.127855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.60597 -40.16962 -38.27848 -37.57126 -37.02071 -35.91700 -34.60862 -33.52107 -33.15463 -31.75823 -30.97400 -27.96005 -27.05883 -24.78131 -23.41704 -23.09407 -22.21035 -21.35667 -19.94377 -19.34861 -18.66321 -18.26990 -17.95964 -17.58977 -17.14752 -17.01438 -16.47250 -16.31096 -16.06604 -15.98061 -15.72478 -15.29446 -14.85330 -14.69168 -14.42100 -14.30406 -14.14534 -13.83640 -13.62494 -13.44408 -13.38727 -13.23522 -13.08955 -13.05880 -12.97317 -12.50347 -12.27998 -12.18708 -12.03688 -11.90008 -11.78571 -11.71263 -11.28683 -11.07090 -10.85430 -10.59649 -10.12813 -9.77065 -9.68744 -8.37239 -6.43295 -0.79466 0.40175 0.53361 1.30549 1.32155 1.42673 1.62811 1.68805 2.28519 2.65606 2.73528 2.91552 2.96232 3.12553 3.62602 3.82120 3.91318 3.95562 3.99093 4.02656 4.17772 4.20451 4.29910 4.32518 4.51805 4.52852 4.64845 4.66194 4.78177 4.82319 5.00781 5.02142 5.05594 5.10632 5.14410 5.19904 5.45658 5.51610 5.60072 5.67127 5.70963 5.95382 6.14890 6.16345 6.49927 6.62075 7.20770 7.39800 8.78621 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009079 B = 0.004469 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.389251 B = 6263.635833 C = 8188.086643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.014 3.986 3 Si 0.925 3.075 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.526 4.526 8 H 0.044 0.956 9 C -0.012 4.012 10 C -0.598 4.598 11 S 2.611 3.389 12 O -0.980 6.980 13 O -0.976 6.976 14 N -0.982 5.982 15 C 0.133 3.867 16 C -0.161 4.161 17 C 0.520 3.480 18 N -0.838 5.838 19 O -0.592 6.592 20 C 0.150 3.850 21 C -0.119 4.119 22 C -0.135 4.135 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.126 4.126 26 C -0.102 4.102 27 H 0.270 0.730 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.138 0.862 35 H 0.102 0.898 36 H 0.418 0.582 37 H 0.407 0.593 38 H 0.133 0.867 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.135 0.865 43 H 0.145 0.855 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.739 -17.074 -1.635 26.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.184 4.184 3 Si 0.747 3.253 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.173 1.173 7 C -0.565 4.565 8 H 0.062 0.938 9 C -0.051 4.051 10 C -0.728 4.728 11 S 2.707 3.293 12 O -0.971 6.971 13 O -0.966 6.966 14 N -0.818 5.818 15 C 0.008 3.992 16 C -0.203 4.203 17 C 0.306 3.694 18 N -0.402 5.402 19 O -0.473 6.473 20 C 0.026 3.974 21 C -0.120 4.120 22 C -0.154 4.154 23 C -0.153 4.153 24 C -0.143 4.143 25 C -0.144 4.144 26 C -0.120 4.120 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.156 0.844 35 H 0.120 0.880 36 H 0.250 0.750 37 H 0.238 0.762 38 H 0.151 0.849 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.153 0.847 43 H 0.163 0.837 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 20.547 -16.471 -1.417 26.372 hybrid contribution -0.896 0.683 0.145 1.136 sum 19.651 -15.788 -1.273 25.240 Atomic orbital electron populations 1.70011 1.07924 1.28406 1.51610 1.25878 0.95645 1.03012 0.93871 0.86030 0.79925 0.79279 0.80069 1.18173 1.19774 1.17314 1.21119 0.90208 0.93712 1.51463 0.93808 1.19333 0.97302 0.90770 0.97698 1.30484 1.24516 1.06059 1.11742 1.04858 0.77505 0.73584 0.73305 1.93519 1.78419 1.79080 1.46047 1.93505 1.78399 1.78901 1.45806 1.57428 1.83935 1.28380 1.12077 1.21066 0.95738 0.99504 0.82930 1.22121 0.99210 1.03118 0.95826 1.20753 0.83152 0.78586 0.86954 1.43733 1.08813 1.59722 1.27942 1.90758 1.41524 1.50770 1.64247 1.20596 0.94971 0.97718 0.84135 1.20436 0.97319 0.95661 0.98632 1.21341 0.94816 0.99988 0.99215 1.21367 0.97337 0.95902 1.00664 1.21456 1.00103 0.94716 0.98047 1.21495 0.93948 1.01048 0.97888 1.21331 0.98012 0.93880 0.98790 0.92094 0.95125 0.94948 0.84939 0.85426 0.91349 0.87829 0.84415 0.87951 0.75023 0.76179 0.84906 0.88075 0.86667 0.86099 0.84703 0.83750 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.78 13.96 21.44 0.30 -58.48 16 2 C 0.01 0.85 5.47 84.65 0.46 1.32 16 3 Si 0.92 44.38 27.47 68.60 1.88 46.27 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 7 C -0.53 -30.69 9.66 25.60 0.25 -30.44 16 8 H 0.04 2.76 7.99 -2.91 -0.02 2.74 16 9 C -0.01 -0.59 4.05 29.85 0.12 -0.47 16 10 C -0.60 -23.34 6.12 71.98 0.44 -22.90 16 11 S 2.61 86.96 5.37 -56.49 -0.30 86.66 16 12 O -0.98 -36.73 16.74 -127.65 -2.14 -38.87 16 13 O -0.98 -35.27 16.53 -127.65 -2.11 -37.38 16 14 N -0.98 -22.84 2.70 -519.84 -1.40 -24.25 16 15 C 0.13 2.86 4.54 86.38 0.39 3.25 16 16 C -0.16 -2.54 6.02 29.85 0.18 -2.36 16 17 C 0.52 9.58 8.10 87.66 0.71 10.29 16 18 N -0.84 -8.12 8.87 -173.54 -1.54 -9.66 16 19 O -0.59 -16.66 16.82 -3.03 -0.05 -16.71 16 20 C 0.15 2.76 5.78 85.64 0.50 3.25 16 21 C -0.12 -2.55 5.46 -19.86 -0.11 -2.66 16 22 C -0.13 -3.54 8.01 22.27 0.18 -3.37 16 23 C -0.13 -3.50 10.05 22.27 0.22 -3.27 16 24 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 25 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 26 C -0.10 -1.85 9.37 22.27 0.21 -1.64 16 27 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 28 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 29 H 0.03 1.52 7.57 -2.38 -0.02 1.50 16 30 H 0.13 4.94 5.88 -2.39 -0.01 4.93 16 31 H 0.13 4.81 8.14 -2.39 -0.02 4.79 16 32 H 0.07 1.81 7.56 -2.39 -0.02 1.80 16 33 H 0.10 1.90 7.56 -2.39 -0.02 1.88 16 34 H 0.14 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.10 1.76 7.90 -2.39 -0.02 1.74 16 36 H 0.42 1.29 8.83 -92.71 -0.82 0.47 16 37 H 0.41 3.38 8.93 -92.71 -0.83 2.55 16 38 H 0.13 1.33 8.05 -2.38 -0.02 1.31 16 39 H 0.10 2.01 6.76 -2.39 -0.02 2.00 16 40 H 0.12 3.19 7.69 -2.91 -0.02 3.17 16 41 H 0.12 3.08 8.06 -2.91 -0.02 3.05 16 42 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 43 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.15 1.83 7.90 -2.91 -0.02 1.81 16 Total: -1.00 -82.19 380.52 -2.03 -84.22 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.67 Total: 21.89 kcal Atomic # 6 Polarization: -57.69 SS G_CDS: 4.00 Total: -53.69 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -2.64 Total: -92.39 kcal Atomic # 8 Polarization: -88.67 SS G_CDS: -4.30 Total: -92.96 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Atomic # 16 Polarization: 86.96 SS G_CDS: -0.30 Total: 86.66 kcal Total: -82.19 -2.03 -84.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111326242.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.898 kcal (2) G-P(sol) polarization free energy of solvation -82.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds