Wall clock time and date at job start Tue Mar 31 2020 22:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00372 * 2 1 4 4 H 1.48507 * 109.46959 * 269.99455 * 3 2 1 5 5 H 1.48492 * 109.47037 * 29.99673 * 3 2 1 6 6 H 1.48501 * 109.46989 * 149.99657 * 3 2 1 7 7 C 1.37883 * 119.99494 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99989 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47344 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47115 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54649 * 68.37459 * 11 10 9 13 13 O 1.42101 * 110.54414 * 291.62253 * 11 10 9 14 14 N 1.65604 * 104.44836 * 179.97438 * 11 10 9 15 15 C 1.46500 * 119.99996 * 64.99883 * 14 11 10 16 16 C 1.50697 * 109.47378 * 164.99889 * 15 14 11 17 17 O 1.21281 * 120.00097 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00044 * 180.02562 * 16 15 14 19 19 C 1.46496 * 119.99815 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47070 * 179.97438 * 19 18 16 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 0.97005 * 119.99249 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47091 * 59.99735 * 9 7 2 29 29 H 1.08994 * 109.47481 * 300.00332 * 9 7 2 30 30 H 1.08999 * 109.46901 * 59.99633 * 10 9 7 31 31 H 1.09007 * 109.46711 * 300.00243 * 10 9 7 32 32 H 0.96999 * 120.00279 * 245.00198 * 14 11 10 33 33 H 1.09008 * 109.47215 * 44.99771 * 15 14 11 34 34 H 1.09004 * 109.47072 * 285.00068 * 15 14 11 35 35 H 0.96998 * 120.00310 * 359.97438 * 18 16 15 36 36 H 1.08995 * 109.47623 * 59.99727 * 19 18 16 37 37 H 1.09004 * 109.47046 * 299.99734 * 19 18 16 38 38 H 1.09005 * 109.47610 * 60.00011 * 20 19 18 39 39 H 1.09000 * 109.47256 * 299.99352 * 20 19 18 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0462 -1.4002 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0213 -2.6368 0.0010 11 16 5.8353 -2.6369 0.0025 12 8 6.3330 -2.1470 1.2400 13 8 6.3350 -2.1461 -1.2340 14 7 6.2484 -4.2406 0.0029 15 6 5.9128 -5.0838 -1.1471 16 6 6.6974 -6.3683 -1.0743 17 8 7.4614 -6.5608 -0.1522 18 7 6.5502 -7.3033 -2.0338 19 6 7.3125 -8.5523 -1.9626 20 6 6.9621 -9.4328 -3.1637 21 6 7.7468 -10.7174 -3.0909 22 6 7.2216 -11.8115 -2.4291 23 6 7.9411 -12.9899 -2.3627 24 6 9.1856 -13.0745 -2.9586 25 6 9.7131 -11.9787 -3.6158 26 6 8.9915 -10.8017 -3.6862 27 1 -0.4849 0.8402 -0.0004 28 1 3.8744 -0.6803 0.8911 29 1 3.8752 -0.6807 -0.8887 30 1 3.6582 -3.1504 -0.8892 31 1 3.6575 -3.1508 0.8908 32 1 6.7126 -4.6217 0.7646 33 1 6.1621 -4.5575 -2.0686 34 1 4.8462 -5.3083 -1.1342 35 1 5.9389 -7.1496 -2.7711 36 1 7.0625 -9.0786 -1.0415 37 1 8.3792 -8.3281 -1.9749 38 1 7.2119 -8.9067 -4.0852 39 1 5.8955 -9.6570 -3.1510 40 1 6.2491 -11.7456 -1.9639 41 1 7.5310 -13.8446 -1.8453 42 1 9.7475 -13.9954 -2.9071 43 1 10.6872 -12.0434 -4.0777 44 1 9.4015 -9.9471 -4.2039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111334977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:50 Heat of formation + Delta-G solvation = -96.451384 kcal Electronic energy + Delta-G solvation = -25648.694383 eV Core-core repulsion = 21692.636360 eV Total energy + Delta-G solvation = -3956.058023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.19350 -39.60186 -36.75504 -36.04542 -35.60474 -34.66749 -33.97734 -33.15500 -31.50938 -31.33259 -29.35457 -26.96522 -26.00128 -23.83842 -23.03016 -21.55468 -21.35101 -20.87924 -19.17759 -18.11039 -17.40622 -17.21465 -16.78078 -16.42411 -16.22399 -15.84140 -15.64399 -15.39406 -15.37903 -14.71180 -14.43915 -14.28893 -13.85120 -13.76203 -13.54433 -13.46192 -13.27126 -13.05469 -12.81155 -12.29449 -11.95959 -11.92008 -11.82777 -11.75080 -11.66824 -11.55449 -11.37871 -11.27783 -11.22015 -10.47519 -10.28241 -10.17596 -9.89550 -9.55802 -9.48305 -9.35272 -9.23080 -9.17475 -8.68210 -6.18708 -4.20140 0.60193 0.87351 0.95967 2.30071 2.64550 3.07006 3.25388 3.33143 3.34031 3.37469 4.11072 4.24112 4.32280 4.34284 4.40230 4.53930 4.55325 4.61510 4.67315 4.69591 4.97758 5.04295 5.05311 5.06906 5.11569 5.13266 5.33698 5.40791 5.47864 5.50894 5.59183 5.61117 5.68114 5.97766 6.03643 6.08309 6.14587 6.24594 6.55176 6.79137 6.90232 6.96990 7.14332 7.52589 7.84207 8.33959 8.82086 9.41013 10.93561 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.001740 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.659196 B =16084.889457 C =16680.384055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.583 4.583 11 S 2.594 3.406 12 O -0.960 6.960 13 O -0.966 6.966 14 N -1.115 6.115 15 C 0.097 3.903 16 C 0.515 3.485 17 O -0.529 6.529 18 N -0.732 5.732 19 C 0.125 3.875 20 C -0.093 4.093 21 C -0.082 4.082 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.114 4.114 27 H 0.266 0.734 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.423 0.577 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.405 0.595 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.235 -25.661 -8.997 31.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.716 4.716 11 S 2.691 3.309 12 O -0.951 6.951 13 O -0.956 6.956 14 N -0.876 5.876 15 C -0.034 4.034 16 C 0.300 3.700 17 O -0.405 6.405 18 N -0.385 5.385 19 C 0.001 3.999 20 C -0.131 4.131 21 C -0.083 4.083 22 C -0.131 4.131 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.137 4.137 26 C -0.132 4.132 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.260 0.740 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.240 0.760 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.208 -24.905 -8.470 30.898 hybrid contribution -0.399 0.258 -0.097 0.485 sum 15.809 -24.646 -8.567 30.509 Atomic orbital electron populations 1.69883 1.06218 1.27273 1.49931 1.24986 0.94822 0.99185 0.94103 0.86921 0.80728 0.83667 0.79109 1.19683 1.20768 1.18587 1.20844 0.87809 0.94904 1.52382 0.90405 1.19419 0.99899 0.87416 0.97987 1.30313 1.21021 1.09306 1.10981 1.05554 0.79060 0.72003 0.74263 1.93575 1.79170 1.77331 1.45000 1.93545 1.78436 1.77840 1.45772 1.55598 1.75287 1.29664 1.27027 1.21064 0.99916 0.90749 0.91673 1.20572 0.82598 0.84950 0.81888 1.90712 1.37312 1.78781 1.33688 1.45924 1.46508 1.18457 1.27635 1.21331 0.96552 0.83634 0.98343 1.20799 1.00397 0.93153 0.98710 1.19656 0.95161 0.94948 0.98539 1.21104 1.00163 0.92859 0.99018 1.21178 0.95035 0.97904 0.99565 1.21199 0.95997 0.98727 0.98137 1.21176 0.99889 0.93254 0.99375 1.21101 0.94255 0.98086 0.99725 0.92372 0.94834 0.95279 0.85707 0.85315 0.74009 0.87057 0.88303 0.76047 0.91097 0.91127 0.89975 0.89944 0.85890 0.85970 0.86101 0.85985 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.19 9.66 -34.44 -0.33 -14.52 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.18 4.05 -27.89 -0.11 -0.29 16 10 C -0.58 -10.01 6.01 37.16 0.22 -9.79 16 11 S 2.59 42.56 5.46 -107.50 -0.59 41.97 16 12 O -0.96 -18.96 18.08 -57.54 -1.04 -20.00 16 13 O -0.97 -18.03 17.50 -57.54 -1.01 -19.04 16 14 N -1.12 -14.37 5.82 -11.65 -0.07 -14.44 16 15 C 0.10 0.94 6.61 -5.20 -0.03 0.91 16 16 C 0.52 5.40 7.90 -10.99 -0.09 5.31 16 17 O -0.53 -7.64 15.73 5.56 0.09 -7.55 16 18 N -0.73 -5.07 5.56 -60.30 -0.34 -5.41 16 19 C 0.12 0.87 5.66 -4.05 -0.02 0.85 16 20 C -0.09 -0.44 5.46 -27.88 -0.15 -0.59 16 21 C -0.08 -0.52 5.13 -104.62 -0.54 -1.05 16 22 C -0.11 -0.71 9.70 -39.58 -0.38 -1.10 16 23 C -0.12 -0.72 10.05 -39.58 -0.40 -1.12 16 24 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 25 C -0.12 -0.72 10.05 -39.58 -0.40 -1.12 16 26 C -0.11 -0.72 9.70 -39.58 -0.38 -1.10 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 29 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 30 H 0.12 1.82 8.14 -51.92 -0.42 1.40 16 31 H 0.13 2.03 8.14 -51.92 -0.42 1.61 16 32 H 0.42 5.52 7.66 -34.48 -0.26 5.26 16 33 H 0.11 0.96 7.70 -51.92 -0.40 0.56 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.40 1.53 8.47 -40.82 -0.35 1.19 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 39 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 40 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 41 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -37.90 387.88 -10.54 -48.45 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.43 Total: 2.34 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -3.11 Total: -22.81 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.37 Total: -45.72 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -1.96 Total: -46.59 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 42.56 SS G_CDS: -0.59 Total: 41.97 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.90 -10.54 -48.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111334977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.005 kcal (2) G-P(sol) polarization free energy of solvation -37.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds