Wall clock time and date at job start Wed Apr 1 2020 00:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38363 * 119.85393 * 2 1 4 4 C 1.37956 * 120.14702 * 179.97438 * 3 2 1 5 5 C 1.39576 * 119.84932 * 0.28830 * 4 3 2 6 6 C 1.47851 * 120.13897 * 179.71861 * 5 4 3 7 7 O 1.21548 * 120.00104 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99404 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99572 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47108 * 180.02562 * 9 8 6 11 11 N 1.46501 * 109.47105 * 179.97438 * 10 9 8 12 12 S 1.65597 * 119.99753 * 164.99824 * 11 10 9 13 13 O 1.42105 * 104.27645 * 181.07466 * 12 11 10 14 14 O 1.42102 * 104.27906 * 308.92855 * 12 11 10 15 15 C 1.81399 * 104.44891 * 65.00469 * 12 11 10 16 16 C 1.53000 * 109.47065 * 179.97438 * 15 12 11 17 17 C 1.50697 * 109.47079 * 179.97438 * 16 15 12 18 18 H 1.07996 * 120.00136 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00261 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99546 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00347 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47454 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47066 * 120.00453 * 21 19 17 24 24 H 1.48502 * 109.47409 * 240.00303 * 21 19 17 25 25 C 1.39570 * 119.71446 * 359.45852 * 5 4 3 26 26 C 1.37965 * 119.85310 * 0.51608 * 25 5 4 27 27 H 1.09004 * 109.47541 * 89.99459 * 1 2 3 28 28 H 1.08999 * 109.46991 * 209.99514 * 1 2 3 29 29 H 1.08999 * 109.47659 * 329.99637 * 1 2 3 30 30 H 1.08008 * 119.92400 * 359.96175 * 3 2 1 31 31 H 1.08002 * 120.07114 * 180.02562 * 4 3 2 32 32 H 0.96996 * 120.00513 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.46896 * 299.99924 * 9 8 6 34 34 H 1.08997 * 109.47343 * 59.99699 * 9 8 6 35 35 H 1.08996 * 109.46727 * 300.00236 * 10 9 8 36 36 H 1.09000 * 109.46589 * 59.99886 * 10 9 8 37 37 H 0.96998 * 120.00166 * 345.00631 * 11 10 9 38 38 H 1.08998 * 109.46991 * 299.99553 * 15 12 11 39 39 H 1.08992 * 109.47291 * 59.99613 * 15 12 11 40 40 H 1.08998 * 109.47038 * 300.00251 * 16 15 12 41 41 H 1.09005 * 109.47403 * 59.99918 * 16 15 12 42 42 H 0.97004 * 119.99490 * 180.02562 * 20 19 17 43 43 H 1.07995 * 120.07846 * 180.23172 * 25 5 4 44 44 H 1.07994 * 119.93049 * 179.74166 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2761 0.0001 -0.0050 6 6 5.7546 0.0002 -0.0108 7 8 6.3623 1.0528 -0.0111 8 7 6.4285 -1.1671 -0.0156 9 6 7.8935 -1.1670 -0.0207 10 6 8.4035 -2.6095 -0.0262 11 7 9.8685 -2.6094 -0.0319 12 16 10.6980 -3.9956 0.3327 13 8 12.0653 -3.6168 0.2536 14 8 10.1286 -4.4323 1.5592 15 6 10.2762 -5.1415 -1.0088 16 6 10.9907 -6.4756 -0.7834 17 6 10.6398 -7.4278 -1.8974 18 1 9.9742 -7.1129 -2.6874 19 6 11.1694 -8.7007 -1.9088 20 7 11.9804 -9.0841 -0.9469 21 14 10.7351 -9.8808 -3.2901 22 1 9.8116 -9.2115 -4.2410 23 1 11.9732 -10.2843 -4.0041 24 1 10.0757 -11.0849 -2.7236 25 6 3.5753 -1.2069 0.0004 26 6 2.1957 -1.2000 0.0004 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6520 2.1333 -0.0006 31 1 4.1116 2.1445 0.0010 32 1 5.9435 -2.0071 -0.0157 33 1 8.2537 -0.6513 -0.9109 34 1 8.2599 -0.6550 0.8690 35 1 8.0433 -3.1256 0.8637 36 1 8.0371 -3.1210 -0.9162 37 1 10.3527 -1.7975 -0.2492 38 1 9.1985 -5.3040 -1.0225 39 1 10.5918 -4.7172 -1.9618 40 1 12.0684 -6.3128 -0.7698 41 1 10.6754 -6.9002 0.1698 42 1 12.3532 -9.9796 -0.9551 43 1 4.1117 -2.1443 -0.0001 44 1 1.6521 -2.1332 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111346272.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:57 Heat of formation + Delta-G solvation = -100.221729 kcal Electronic energy + Delta-G solvation = -25750.446579 eV Core-core repulsion = 21794.225062 eV Total energy + Delta-G solvation = -3956.221517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.58860 -38.92140 -36.78814 -36.39727 -35.49483 -34.26348 -33.93597 -33.23052 -31.42321 -31.20652 -29.08506 -27.33838 -25.64830 -23.52249 -23.13526 -22.43380 -21.69457 -20.71112 -19.04039 -18.50848 -17.55043 -16.64372 -16.53016 -16.08530 -15.94336 -15.70671 -15.42733 -15.18568 -15.12481 -14.67306 -14.57213 -14.50013 -14.13184 -14.03361 -13.63676 -13.43806 -12.72766 -12.65452 -12.53108 -12.36588 -12.16917 -12.05414 -11.78993 -11.65052 -11.58420 -11.54790 -11.45316 -11.12859 -11.00099 -10.45561 -10.43128 -10.31327 -9.88387 -9.60416 -9.49136 -9.44631 -9.12324 -9.09155 -8.54250 -6.16186 -4.21881 0.40898 0.70240 0.92502 2.48908 2.62360 3.21382 3.22433 3.29948 3.32939 3.44369 4.16679 4.21085 4.28584 4.33757 4.39063 4.47181 4.54866 4.64906 4.80161 4.82583 4.89520 5.09428 5.11450 5.17929 5.19162 5.24750 5.30309 5.52238 5.56848 5.58441 5.59256 5.63421 5.79469 5.83796 5.91561 6.04230 6.07256 6.43212 6.43456 6.95808 7.09418 7.26159 7.31978 7.76838 7.84076 8.13344 8.81786 9.43132 10.94785 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012685 B = 0.002037 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.815546 B =13742.556079 C =15467.709228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.061 4.061 3 C -0.130 4.130 4 C -0.055 4.055 5 C -0.142 4.142 6 C 0.561 3.439 7 O -0.536 6.536 8 N -0.724 5.724 9 C 0.114 3.886 10 C 0.104 3.896 11 N -1.125 6.125 12 S 2.596 3.404 13 O -0.964 6.964 14 O -0.965 6.965 15 C -0.588 4.588 16 C 0.027 3.973 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.081 4.081 26 C -0.128 4.128 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.403 0.597 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.415 0.585 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.265 0.735 43 H 0.129 0.871 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.952 18.712 0.877 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.074 4.074 5 C -0.145 4.145 6 C 0.348 3.652 7 O -0.414 6.414 8 N -0.378 5.378 9 C -0.011 4.011 10 C -0.023 4.023 11 N -0.883 5.883 12 S 2.693 3.307 13 O -0.954 6.954 14 O -0.955 6.955 15 C -0.722 4.722 16 C -0.012 4.012 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.527 5.527 21 Si 0.728 3.272 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.099 4.099 26 C -0.146 4.146 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.239 0.761 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.248 0.752 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.922 19.063 1.782 28.360 hybrid contribution -0.517 -0.953 -1.444 1.805 sum -21.439 18.110 0.338 28.067 Atomic orbital electron populations 1.20884 0.90781 1.03237 1.02774 1.20198 0.96482 0.93181 0.96251 1.21061 0.93833 0.97937 1.02001 1.21278 0.93868 0.97760 0.94470 1.19896 0.92545 0.94640 1.07404 1.18262 0.87199 0.83587 0.76119 1.90786 1.69893 1.31105 1.49568 1.45752 1.07293 1.08894 1.75824 1.21513 0.79252 0.96659 1.03710 1.21350 0.80799 0.97041 1.03127 1.55727 1.13954 1.29277 1.89304 1.05542 0.73687 0.74279 0.77211 1.93566 1.32629 1.81326 1.87878 1.93544 1.78914 1.81541 1.41517 1.30440 1.10870 1.14273 1.16619 1.18979 0.95659 0.87221 0.99370 1.21029 1.29286 0.97102 1.08563 0.92003 1.25079 0.94897 0.98320 0.96268 1.69968 1.31115 1.19388 1.32272 0.86409 0.78321 0.80750 0.81756 1.19679 1.20799 1.20794 1.21338 0.94633 0.97019 0.96939 1.21025 0.93861 0.97994 1.01742 0.90654 0.91119 0.91189 0.85293 0.84583 0.76112 0.90364 0.90249 0.89445 0.90930 0.75169 0.86350 0.86007 0.94759 0.94764 0.92560 0.85354 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.00 36.00 0.36 -0.10 16 2 C -0.06 -0.37 5.89 -104.53 -0.62 -0.99 16 3 C -0.13 -0.87 9.68 -39.64 -0.38 -1.26 16 4 C -0.05 -0.47 9.60 -39.19 -0.38 -0.84 16 5 C -0.14 -1.27 5.87 -104.97 -0.62 -1.88 16 6 C 0.56 6.02 7.77 -12.33 -0.10 5.93 16 7 O -0.54 -7.63 16.35 5.32 0.09 -7.54 16 8 N -0.72 -6.13 5.51 -61.25 -0.34 -6.46 16 9 C 0.11 1.03 5.82 -4.04 -0.02 1.01 16 10 C 0.10 0.98 6.25 -4.04 -0.03 0.95 16 11 N -1.13 -12.96 5.89 -10.61 -0.06 -13.03 16 12 S 2.60 43.11 5.46 -107.50 -0.59 42.52 16 13 O -0.96 -19.18 18.08 -57.54 -1.04 -20.22 16 14 O -0.97 -18.86 17.50 -57.54 -1.01 -19.87 16 15 C -0.59 -10.49 6.01 37.16 0.22 -10.27 16 16 C 0.03 0.66 4.98 -27.88 -0.14 0.52 16 17 C -0.52 -14.02 9.11 -34.44 -0.31 -14.33 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 21 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.08 -0.55 9.54 -39.18 -0.37 -0.92 16 26 C -0.13 -0.79 9.68 -39.64 -0.38 -1.17 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 29 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 30 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 31 H 0.14 1.17 7.65 -52.49 -0.40 0.76 16 32 H 0.40 2.33 6.51 -40.82 -0.27 2.07 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.83 7.70 -51.93 -0.40 0.44 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.41 4.04 8.62 -34.47 -0.30 3.74 16 38 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.12 1.96 8.14 -51.93 -0.42 1.53 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.13 0.58 6.41 -52.49 -0.34 0.24 16 44 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -37.69 388.92 -10.54 -48.23 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.31 Total: 1.87 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -2.86 Total: -21.87 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.34 Total: -44.80 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -1.96 Total: -47.63 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 43.11 SS G_CDS: -0.59 Total: 42.52 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.69 -10.54 -48.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111346272.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.990 kcal (2) G-P(sol) polarization free energy of solvation -37.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds