Wall clock time and date at job start Wed Apr 1 2020 00:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38363 * 119.85393 * 2 1 4 4 C 1.37956 * 120.14702 * 179.97438 * 3 2 1 5 5 C 1.39576 * 119.84932 * 0.28830 * 4 3 2 6 6 C 1.47851 * 120.13897 * 179.71861 * 5 4 3 7 7 O 1.21548 * 120.00104 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99404 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99572 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47108 * 180.02562 * 9 8 6 11 11 N 1.46501 * 109.47105 * 179.97438 * 10 9 8 12 12 S 1.65597 * 119.99753 * 164.99824 * 11 10 9 13 13 O 1.42105 * 104.27645 * 181.07466 * 12 11 10 14 14 O 1.42102 * 104.27906 * 308.92855 * 12 11 10 15 15 C 1.81399 * 104.44891 * 65.00469 * 12 11 10 16 16 C 1.53000 * 109.47065 * 179.97438 * 15 12 11 17 17 C 1.50697 * 109.47079 * 179.97438 * 16 15 12 18 18 H 1.07996 * 120.00136 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00261 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99546 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00347 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47454 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47066 * 120.00453 * 21 19 17 24 24 H 1.48502 * 109.47409 * 240.00303 * 21 19 17 25 25 C 1.39570 * 119.71446 * 359.45852 * 5 4 3 26 26 C 1.37965 * 119.85310 * 0.51608 * 25 5 4 27 27 H 1.09004 * 109.47541 * 89.99459 * 1 2 3 28 28 H 1.08999 * 109.46991 * 209.99514 * 1 2 3 29 29 H 1.08999 * 109.47659 * 329.99637 * 1 2 3 30 30 H 1.08008 * 119.92400 * 359.96175 * 3 2 1 31 31 H 1.08002 * 120.07114 * 180.02562 * 4 3 2 32 32 H 0.96996 * 120.00513 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.46896 * 299.99924 * 9 8 6 34 34 H 1.08997 * 109.47343 * 59.99699 * 9 8 6 35 35 H 1.08996 * 109.46727 * 300.00236 * 10 9 8 36 36 H 1.09000 * 109.46589 * 59.99886 * 10 9 8 37 37 H 0.96998 * 120.00166 * 345.00631 * 11 10 9 38 38 H 1.08998 * 109.46991 * 299.99553 * 15 12 11 39 39 H 1.08992 * 109.47291 * 59.99613 * 15 12 11 40 40 H 1.08998 * 109.47038 * 300.00251 * 16 15 12 41 41 H 1.09005 * 109.47403 * 59.99918 * 16 15 12 42 42 H 0.97004 * 119.99490 * 180.02562 * 20 19 17 43 43 H 1.07995 * 120.07846 * 180.23172 * 25 5 4 44 44 H 1.07994 * 119.93049 * 179.74166 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2761 0.0001 -0.0050 6 6 5.7546 0.0002 -0.0108 7 8 6.3623 1.0528 -0.0111 8 7 6.4285 -1.1671 -0.0156 9 6 7.8935 -1.1670 -0.0207 10 6 8.4035 -2.6095 -0.0262 11 7 9.8685 -2.6094 -0.0319 12 16 10.6980 -3.9956 0.3327 13 8 12.0653 -3.6168 0.2536 14 8 10.1286 -4.4323 1.5592 15 6 10.2762 -5.1415 -1.0088 16 6 10.9907 -6.4756 -0.7834 17 6 10.6398 -7.4278 -1.8974 18 1 9.9742 -7.1129 -2.6874 19 6 11.1694 -8.7007 -1.9088 20 7 11.9804 -9.0841 -0.9469 21 14 10.7351 -9.8808 -3.2901 22 1 9.8116 -9.2115 -4.2410 23 1 11.9732 -10.2843 -4.0041 24 1 10.0757 -11.0849 -2.7236 25 6 3.5753 -1.2069 0.0004 26 6 2.1957 -1.2000 0.0004 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6520 2.1333 -0.0006 31 1 4.1116 2.1445 0.0010 32 1 5.9435 -2.0071 -0.0157 33 1 8.2537 -0.6513 -0.9109 34 1 8.2599 -0.6550 0.8690 35 1 8.0433 -3.1256 0.8637 36 1 8.0371 -3.1210 -0.9162 37 1 10.3527 -1.7975 -0.2492 38 1 9.1985 -5.3040 -1.0225 39 1 10.5918 -4.7172 -1.9618 40 1 12.0684 -6.3128 -0.7698 41 1 10.6754 -6.9002 0.1698 42 1 12.3532 -9.9796 -0.9551 43 1 4.1117 -2.1443 -0.0001 44 1 1.6521 -2.1332 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111346272.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:56 Heat of formation + Delta-G solvation = -129.075429 kcal Electronic energy + Delta-G solvation = -25751.697769 eV Core-core repulsion = 21794.225062 eV Total energy + Delta-G solvation = -3957.472707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.27816 -39.53549 -38.17563 -37.38902 -36.97095 -35.86508 -35.13125 -33.74527 -33.09421 -31.93805 -29.81910 -27.88715 -27.56458 -24.23626 -23.65816 -23.58483 -23.03688 -21.38893 -20.30421 -19.25824 -19.03382 -18.23156 -17.44137 -17.11571 -17.06225 -16.67265 -16.50718 -16.22286 -15.96206 -15.77996 -15.61638 -15.39725 -15.02050 -14.59291 -14.52828 -14.45319 -14.24399 -13.70760 -13.41671 -13.29884 -13.15672 -13.04878 -13.01747 -12.93775 -12.79900 -12.74499 -12.63843 -12.53399 -12.21395 -12.08587 -11.93168 -11.71009 -11.17247 -11.14127 -10.63643 -10.44216 -10.25103 -9.95838 -9.64277 -8.24327 -6.37713 -0.67503 -0.16805 0.41848 1.42525 1.43027 1.55977 1.68396 1.79432 2.24450 2.39493 2.84530 2.86537 3.09605 3.29887 3.56306 3.71764 3.86248 4.00449 4.02880 4.05186 4.06824 4.18346 4.38998 4.39191 4.44575 4.51568 4.77363 4.80009 4.81711 4.85174 4.87152 4.94686 5.08932 5.24166 5.27126 5.31583 5.32792 5.34356 5.39761 5.61198 5.71140 5.95584 6.06785 6.09285 6.42559 6.76866 7.10205 7.32480 8.87945 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012685 B = 0.002037 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.815546 B =13742.556079 C =15467.709228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.061 4.061 3 C -0.136 4.136 4 C -0.073 4.073 5 C -0.164 4.164 6 C 0.558 3.442 7 O -0.581 6.581 8 N -0.712 5.712 9 C 0.117 3.883 10 C 0.098 3.902 11 N -1.108 6.108 12 S 2.626 3.374 13 O -0.999 6.999 14 O -0.995 6.995 15 C -0.586 4.586 16 C 0.017 3.983 17 C -0.535 4.535 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.934 5.934 21 Si 0.973 3.027 22 H -0.254 1.254 23 H -0.282 1.282 24 H -0.279 1.279 25 C -0.079 4.079 26 C -0.133 4.133 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.124 0.876 32 H 0.417 0.583 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.426 0.574 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.005 0.995 41 H 0.009 0.991 42 H 0.266 0.734 43 H 0.151 0.849 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.792 18.442 -0.643 30.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.062 4.062 3 C -0.154 4.154 4 C -0.092 4.092 5 C -0.167 4.167 6 C 0.347 3.653 7 O -0.462 6.462 8 N -0.365 5.365 9 C -0.008 4.008 10 C -0.028 4.028 11 N -0.870 5.870 12 S 2.723 3.277 13 O -0.990 6.990 14 O -0.985 6.985 15 C -0.718 4.718 16 C -0.022 4.022 17 C -0.574 4.574 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.574 5.574 21 Si 0.797 3.203 22 H -0.178 1.178 23 H -0.207 1.207 24 H -0.204 1.204 25 C -0.098 4.098 26 C -0.151 4.151 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.164 0.836 31 H 0.142 0.858 32 H 0.256 0.744 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.263 0.737 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.023 0.977 41 H 0.027 0.973 42 H 0.075 0.925 43 H 0.169 0.831 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -23.779 18.771 0.251 30.296 hybrid contribution 0.280 -0.799 -0.936 1.262 sum -23.499 17.972 -0.685 29.591 Atomic orbital electron populations 1.20943 0.88953 1.04153 1.03547 1.20564 0.97890 0.92921 0.94803 1.21281 0.93150 0.99229 1.01704 1.21343 0.94844 0.97420 0.95570 1.19876 0.91517 0.95751 1.09518 1.18615 0.88050 0.83366 0.75310 1.90755 1.70856 1.32687 1.51939 1.45627 1.07058 1.09072 1.74773 1.21409 0.79611 0.96348 1.03422 1.21608 0.78997 0.97472 1.04762 1.55172 1.15031 1.27847 1.88941 1.04320 0.72713 0.74470 0.76207 1.93514 1.35263 1.82063 1.88135 1.93505 1.79305 1.82611 1.43078 1.30322 1.12008 1.11140 1.18353 1.18849 0.94749 0.90702 0.97898 1.21560 1.28983 0.97640 1.09229 0.90416 1.26120 0.94804 1.00610 0.98915 1.70115 1.32695 1.20000 1.34616 0.85273 0.78221 0.78216 0.78570 1.17791 1.20742 1.20441 1.21595 0.95187 0.97008 0.96000 1.21375 0.93729 0.99031 1.00986 0.89803 0.90108 0.90450 0.83632 0.85838 0.74404 0.90090 0.91337 0.89265 0.87959 0.73730 0.83347 0.83815 0.97658 0.97259 0.92508 0.83123 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 10.00 71.23 0.71 0.13 16 2 C -0.06 -0.63 5.89 -19.81 -0.12 -0.74 16 3 C -0.14 -1.69 9.68 22.23 0.22 -1.47 16 4 C -0.07 -1.25 9.60 22.53 0.22 -1.04 16 5 C -0.16 -2.84 5.87 -20.09 -0.12 -2.96 16 6 C 0.56 11.87 7.77 86.79 0.67 12.54 16 7 O -0.58 -17.06 16.35 -3.87 -0.06 -17.12 16 8 N -0.71 -10.95 5.51 -465.96 -2.57 -13.52 16 9 C 0.12 1.95 5.82 86.38 0.50 2.45 16 10 C 0.10 1.58 6.25 86.38 0.54 2.12 16 11 N -1.11 -23.31 5.89 -187.49 -1.10 -24.42 16 12 S 2.63 85.15 5.46 -56.49 -0.31 84.85 16 13 O -1.00 -39.85 18.08 -127.65 -2.31 -42.16 16 14 O -1.00 -38.51 17.50 -127.65 -2.23 -40.74 16 15 C -0.59 -19.94 6.01 71.98 0.43 -19.51 16 16 C 0.02 0.85 4.98 29.85 0.15 0.99 16 17 C -0.54 -28.54 9.11 25.60 0.23 -28.31 16 18 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 19 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 20 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 21 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 22 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 C -0.08 -0.93 9.54 22.53 0.21 -0.71 16 26 C -0.13 -1.31 9.68 22.23 0.22 -1.09 16 27 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 28 H 0.08 0.26 8.08 -2.39 -0.02 0.24 16 29 H 0.08 0.28 8.08 -2.39 -0.02 0.26 16 30 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.12 2.32 7.65 -2.91 -0.02 2.30 16 32 H 0.42 3.78 6.51 -92.71 -0.60 3.18 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.47 7.70 -2.39 -0.02 1.45 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.43 7.49 8.62 -96.75 -0.83 6.66 16 38 H 0.15 4.11 8.14 -2.39 -0.02 4.09 16 39 H 0.14 4.25 8.14 -2.39 -0.02 4.24 16 40 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 42 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 43 H 0.15 0.92 6.41 -2.91 -0.02 0.90 16 44 H 0.15 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -83.82 388.92 -2.35 -86.17 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.41 Total: 15.77 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 4.33 Total: -37.48 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -3.38 Total: -93.54 kcal Atomic # 8 Polarization: -95.42 SS G_CDS: -4.60 Total: -100.02 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 85.15 SS G_CDS: -0.31 Total: 84.85 kcal Total: -83.82 -2.35 -86.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111346272.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.904 kcal (2) G-P(sol) polarization free energy of solvation -83.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds