Wall clock time and date at job start Tue Mar 31 2020 22:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99509 * 2 1 4 4 H 1.48502 * 109.47232 * 269.99636 * 3 2 1 5 5 H 1.48502 * 109.47251 * 29.99944 * 3 2 1 6 6 H 1.48507 * 109.46915 * 149.99940 * 3 2 1 7 7 C 1.37870 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00339 * 180.02562 * 7 2 1 9 9 C 1.50710 * 120.00160 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47191 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47115 * 180.02562 * 10 9 7 12 12 S 1.81404 * 109.47179 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.54080 * 68.37744 * 12 11 10 14 14 O 1.42088 * 110.54374 * 291.62341 * 12 11 10 15 15 N 1.65603 * 104.44617 * 179.97438 * 12 11 10 16 16 C 1.46495 * 120.00270 * 270.00083 * 15 12 11 17 17 C 1.50710 * 109.47271 * 265.00440 * 16 15 12 18 18 N 1.34767 * 120.00049 * 180.02562 * 17 16 15 19 19 O 1.21277 * 119.99618 * 359.97438 * 17 16 15 20 20 C 1.46497 * 119.99696 * 90.00629 * 15 12 11 21 21 C 1.50707 * 109.47012 * 264.99410 * 20 15 12 22 22 C 1.38238 * 119.99792 * 90.00154 * 21 20 15 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.98090 * 21 20 15 27 27 H 0.96998 * 120.00477 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46804 * 59.99250 * 9 7 2 29 29 H 1.09005 * 109.46768 * 300.00231 * 9 7 2 30 30 H 1.08999 * 109.47229 * 60.00066 * 10 9 7 31 31 H 1.09005 * 109.47369 * 299.99760 * 10 9 7 32 32 H 1.08999 * 109.47061 * 59.99911 * 11 10 9 33 33 H 1.08999 * 109.47153 * 300.00165 * 11 10 9 34 34 H 1.09003 * 109.47348 * 25.00296 * 16 15 12 35 35 H 1.08999 * 109.47483 * 145.00192 * 16 15 12 36 36 H 0.97001 * 120.00698 * 359.97438 * 18 17 16 37 37 H 0.97002 * 120.00042 * 179.97438 * 18 17 16 38 38 H 1.09005 * 109.47643 * 144.99871 * 20 15 12 39 39 H 1.09000 * 109.47513 * 24.99035 * 20 15 12 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 16 2.6594 -6.3658 0.0019 13 8 3.3552 -6.4262 1.2395 14 8 3.3570 -6.4261 -1.2344 15 7 1.7090 -7.7220 0.0019 16 6 1.2881 -8.3216 1.2705 17 6 2.2415 -9.4273 1.6443 18 7 2.0507 -10.1260 2.7809 19 8 3.1798 -9.6890 0.9219 20 6 1.2893 -8.3221 -1.2669 21 6 -0.0755 -7.8035 -1.6407 22 6 -0.1939 -6.6601 -2.4085 23 6 -1.4457 -6.1847 -2.7519 24 6 -2.5790 -6.8530 -2.3280 25 6 -2.4607 -7.9935 -1.5558 26 6 -1.2089 -8.4715 -1.2163 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8713 -3.6038 0.8923 31 1 2.8727 -3.6047 -0.8877 32 1 0.8548 -5.0450 -0.8895 33 1 0.8528 -5.0447 0.8904 34 1 1.2907 -7.5604 2.0507 35 1 0.2828 -8.7292 1.1640 36 1 1.3000 -9.9170 3.3586 37 1 2.6641 -10.8379 3.0213 38 1 1.2493 -9.4063 -1.1605 39 1 2.0038 -8.0597 -2.0470 40 1 0.6917 -6.1381 -2.7401 41 1 -1.5382 -5.2911 -3.3513 42 1 -3.5570 -6.4818 -2.5966 43 1 -3.3462 -8.5132 -1.2209 44 1 -1.1163 -9.3652 -0.6171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112362595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:30 Heat of formation + Delta-G solvation = -92.534129 kcal Electronic energy + Delta-G solvation = -28016.030856 eV Core-core repulsion = 24060.142699 eV Total energy + Delta-G solvation = -3955.888158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.87540 -39.25461 -36.93744 -36.11087 -35.66890 -34.67440 -33.86316 -32.20472 -31.75001 -31.01870 -28.18470 -27.81965 -25.38639 -23.66820 -22.71131 -21.57075 -21.10675 -20.49036 -18.88317 -17.86331 -17.58690 -17.19036 -16.74963 -16.51134 -16.22751 -15.70224 -15.23624 -15.14602 -15.04751 -14.72764 -14.49064 -14.16184 -14.08295 -13.52405 -13.33730 -12.87845 -12.67101 -12.55048 -12.35494 -12.25457 -11.91357 -11.77983 -11.61358 -11.55768 -11.51578 -11.20465 -11.04783 -10.91863 -10.84262 -10.49548 -10.37912 -9.95571 -9.89529 -9.51620 -9.25351 -9.03048 -8.97801 -8.92318 -8.40918 -6.05958 -4.08901 0.37725 1.18038 1.28799 2.46758 2.65931 3.30292 3.32802 3.36439 3.40752 3.69025 4.05709 4.27427 4.39906 4.43463 4.60218 4.73211 4.76028 4.89011 4.95379 4.96520 5.06848 5.15954 5.23147 5.30630 5.38220 5.45114 5.61171 5.69942 5.87367 5.90011 5.93665 6.19085 6.30477 6.34436 6.43525 6.45146 6.47451 6.56823 6.86700 6.88043 7.09379 7.56917 7.66674 7.92147 8.07560 8.32703 8.97271 9.55855 11.05153 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.003676 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.424156 B = 7615.025700 C = 9357.903901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.105 4.105 11 C -0.610 4.610 12 S 2.594 3.406 13 O -0.955 6.955 14 O -0.952 6.952 15 N -0.979 5.979 16 C 0.105 3.895 17 C 0.501 3.499 18 N -0.858 5.858 19 O -0.527 6.527 20 C 0.158 3.842 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.110 4.110 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.107 4.107 27 H 0.261 0.739 28 H 0.021 0.979 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.401 0.599 37 H 0.401 0.599 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 -21.892 1.428 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.005 4.005 10 C -0.145 4.145 11 C -0.742 4.742 12 S 2.691 3.309 13 O -0.946 6.946 14 O -0.943 6.943 15 N -0.811 5.811 16 C -0.025 4.025 17 C 0.283 3.717 18 N -0.423 5.423 19 O -0.402 6.402 20 C 0.033 3.967 21 C -0.114 4.114 22 C -0.132 4.132 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.140 4.140 26 C -0.126 4.126 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.229 0.771 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.328 -21.847 0.823 22.502 hybrid contribution -0.586 0.964 0.511 1.239 sum -5.914 -20.882 1.334 21.744 Atomic orbital electron populations 1.69955 1.06066 1.26740 1.50649 1.25002 0.94873 0.99312 0.95097 0.86572 0.79914 0.83214 0.78212 1.20559 1.21180 1.19730 1.21258 0.93266 0.90892 1.51012 0.92384 1.19044 0.93450 0.90332 0.97724 1.21509 0.99380 0.91640 1.01935 1.30702 1.16315 1.15720 1.11478 1.05713 0.75786 0.74937 0.74486 1.93563 1.70097 1.85705 1.45196 1.93546 1.69907 1.85620 1.45187 1.57434 1.70256 1.43829 1.09628 1.21059 0.98024 0.96303 0.87127 1.21259 0.86379 0.83123 0.80936 1.43839 1.33669 1.39591 1.25172 1.90759 1.31059 1.67335 1.51036 1.20277 0.92237 0.98966 0.85245 1.20365 0.95808 0.96438 0.98811 1.21277 0.98352 0.95736 0.97884 1.21258 0.92341 0.99693 0.99525 1.21217 0.98733 0.95561 0.97889 1.21134 0.97277 0.96832 0.98729 1.20976 0.92026 0.99745 0.99847 0.92928 0.96092 0.96155 0.91633 0.91617 0.85233 0.85470 0.86830 0.87201 0.77085 0.76817 0.89176 0.87479 0.85437 0.85495 0.86040 0.86166 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.83 4.97 -27.88 -0.14 0.69 16 10 C -0.11 -2.16 5.16 -26.74 -0.14 -2.30 16 11 C -0.61 -9.77 6.18 37.16 0.23 -9.54 16 12 S 2.59 42.07 5.37 -107.50 -0.58 41.50 16 13 O -0.96 -17.91 16.98 -57.54 -0.98 -18.88 16 14 O -0.95 -17.91 16.53 -57.54 -0.95 -18.86 16 15 N -0.98 -12.08 2.19 -116.94 -0.26 -12.34 16 16 C 0.10 0.98 5.74 -5.19 -0.03 0.95 16 17 C 0.50 5.56 8.17 -10.99 -0.09 5.47 16 18 N -0.86 -5.58 8.87 31.22 0.28 -5.30 16 19 O -0.53 -8.48 17.26 5.56 0.10 -8.38 16 20 C 0.16 1.75 5.77 -5.19 -0.03 1.72 16 21 C -0.11 -1.17 5.46 -104.62 -0.57 -1.75 16 22 C -0.11 -1.33 8.01 -39.58 -0.32 -1.64 16 23 C -0.11 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 26 C -0.11 -0.94 9.37 -39.58 -0.37 -1.31 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.13 1.93 5.88 -51.92 -0.31 1.62 16 33 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.11 0.91 7.61 -51.93 -0.39 0.52 16 35 H 0.11 0.60 7.61 -51.93 -0.40 0.21 16 36 H 0.40 1.18 8.83 -40.82 -0.36 0.82 16 37 H 0.40 2.34 8.93 -40.82 -0.36 1.98 16 38 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 39 H 0.11 1.31 6.76 -51.93 -0.35 0.96 16 40 H 0.13 1.51 7.69 -52.48 -0.40 1.11 16 41 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.76 7.90 -52.49 -0.41 0.35 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -38.57 385.05 -10.26 -48.83 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.33 Total: 2.60 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -3.06 Total: -25.86 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.76 Total: -43.24 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -1.83 Total: -46.13 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 42.07 SS G_CDS: -0.58 Total: 41.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.57 -10.26 -48.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112362595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.704 kcal (2) G-P(sol) polarization free energy of solvation -38.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds