Wall clock time and date at job start Tue Mar 31 2020 23:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48506 * 109.47038 * 270.00547 * 3 2 1 5 5 H 1.48500 * 109.47188 * 29.99948 * 3 2 1 6 6 H 1.48495 * 109.47567 * 150.00231 * 3 2 1 7 7 C 1.37883 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99116 * 359.97438 * 7 2 1 9 9 C 1.50689 * 120.00204 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47210 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47314 * 179.97438 * 10 9 7 12 12 S 1.81396 * 109.47274 * 180.02562 * 11 10 9 13 13 O 1.42105 * 110.54536 * 68.37029 * 12 11 10 14 14 O 1.42101 * 110.54633 * 291.62392 * 12 11 10 15 15 N 1.65599 * 104.45269 * 179.97438 * 12 11 10 16 16 C 1.46499 * 119.99719 * 65.00154 * 15 12 11 17 17 C 1.53000 * 109.47457 * 164.99996 * 16 15 12 18 18 C 1.50701 * 109.47519 * 179.97438 * 17 16 15 19 19 O 1.21287 * 119.99646 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99846 * 179.97438 * 18 17 16 21 21 C 1.39924 * 119.99818 * 185.27752 * 20 18 17 22 22 C 1.38873 * 120.07282 * 33.33155 * 21 20 18 23 23 C 1.38106 * 119.93058 * 179.97438 * 22 21 20 24 24 C 1.38280 * 120.07473 * 359.97438 * 23 22 21 25 25 C 1.38282 * 120.13715 * 0.04477 * 24 23 22 26 26 C 1.38106 * 120.07234 * 359.95443 * 25 24 23 27 27 H 0.97000 * 120.00320 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47794 * 59.99450 * 9 7 2 29 29 H 1.09008 * 109.46852 * 299.99130 * 9 7 2 30 30 H 1.08998 * 109.47148 * 59.99686 * 10 9 7 31 31 H 1.08995 * 109.47014 * 299.99773 * 10 9 7 32 32 H 1.09002 * 109.47556 * 60.00003 * 11 10 9 33 33 H 1.09008 * 109.46986 * 299.99746 * 11 10 9 34 34 H 0.96998 * 120.00181 * 244.99707 * 15 12 11 35 35 H 1.09003 * 109.47708 * 44.99907 * 16 15 12 36 36 H 1.09003 * 109.47221 * 285.00170 * 16 15 12 37 37 H 1.09004 * 109.47248 * 59.99385 * 17 16 15 38 38 H 1.09003 * 109.47048 * 300.00280 * 17 16 15 39 39 H 0.97000 * 120.00137 * 5.27364 * 20 18 17 40 40 H 1.08005 * 120.03105 * 359.70896 * 22 21 20 41 41 H 1.08007 * 119.96089 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.92979 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.96391 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.03629 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6364 -0.0001 12 16 6.1563 -4.3466 -0.0010 13 8 5.8601 -4.9797 -1.2383 14 8 5.8603 -4.9809 1.2356 15 7 7.8059 -4.2017 -0.0017 16 6 8.4892 -3.6039 1.1481 17 6 9.9843 -3.9202 1.0741 18 6 10.6872 -3.3048 2.2565 19 8 10.0545 -2.6754 3.0779 20 7 12.0187 -3.4546 2.4018 21 6 12.6546 -2.9792 3.5539 22 6 11.9911 -2.9998 4.7738 23 6 12.6218 -2.5304 5.9092 24 6 13.9127 -2.0405 5.8326 25 6 14.5759 -2.0182 4.6194 26 6 13.9508 -2.4862 3.4803 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6806 0.8904 29 1 3.8752 -0.6796 -0.8896 30 1 3.6586 -3.1501 -0.8903 31 1 3.6580 -3.1505 0.8896 32 1 5.9150 -2.1227 0.8899 33 1 5.9149 -2.1225 -0.8902 34 1 8.3198 -4.5126 -0.7634 35 1 8.0762 -4.0140 2.0697 36 1 8.3453 -2.5234 1.1348 37 1 10.3973 -3.5101 0.1524 38 1 10.1281 -5.0006 1.0874 39 1 12.5361 -3.8920 1.7077 40 1 10.9815 -3.3787 4.8336 41 1 12.1061 -2.5458 6.8581 42 1 14.4034 -1.6736 6.7219 43 1 15.5839 -1.6346 4.5627 44 1 14.4692 -2.4681 2.5330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113302980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:54 Heat of formation + Delta-G solvation = -93.366503 kcal Electronic energy + Delta-G solvation = -25918.137884 eV Core-core repulsion = 21962.213632 eV Total energy + Delta-G solvation = -3955.924252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.02011 -38.94525 -36.99497 -36.07198 -35.76861 -35.22233 -34.79844 -32.20067 -31.35537 -31.26798 -29.41265 -28.36870 -24.63859 -23.60648 -23.24818 -22.44904 -20.83914 -20.48083 -19.39981 -18.33863 -17.74459 -17.35281 -16.90763 -16.58994 -16.35589 -16.25317 -15.88971 -15.26319 -14.93343 -14.80745 -14.37190 -14.23442 -14.16145 -14.01293 -13.69596 -13.20974 -12.90754 -12.66451 -12.36451 -12.19892 -12.12436 -12.07826 -11.92937 -11.85113 -11.83134 -11.66946 -11.55968 -10.98422 -10.93352 -10.86205 -10.32135 -10.08206 -9.95522 -9.81946 -9.41754 -9.32591 -9.24129 -8.57549 -8.57246 -6.06987 -4.06173 0.36733 0.83967 1.00977 2.10043 2.40371 2.83442 3.28119 3.35967 3.38541 3.43013 3.86006 4.05639 4.24192 4.40038 4.41988 4.52328 4.55499 4.56187 4.77480 4.87306 4.97944 5.01557 5.09045 5.14311 5.15520 5.25807 5.28267 5.40284 5.61432 5.67083 5.78062 5.86744 5.90880 6.08118 6.15452 6.17464 6.28045 6.61632 6.68187 6.75173 6.82832 7.14424 7.28521 7.58312 7.72633 8.49007 8.97411 9.54194 11.06231 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.002130 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.392428 B =13143.525638 C =14762.595490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.098 4.098 11 C -0.615 4.615 12 S 2.606 3.394 13 O -0.960 6.960 14 O -0.958 6.958 15 N -1.127 6.127 16 C 0.127 3.873 17 C -0.146 4.146 18 C 0.516 3.484 19 O -0.510 6.510 20 N -0.676 5.676 21 C 0.145 3.855 22 C -0.121 4.121 23 C -0.100 4.100 24 C -0.137 4.137 25 C -0.102 4.102 26 C -0.148 4.148 27 H 0.264 0.736 28 H 0.020 0.980 29 H 0.015 0.985 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.414 0.586 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.412 0.588 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.032 -7.486 5.068 35.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.044 4.044 10 C -0.137 4.137 11 C -0.747 4.747 12 S 2.701 3.299 13 O -0.951 6.951 14 O -0.948 6.948 15 N -0.885 5.885 16 C 0.000 4.000 17 C -0.187 4.187 18 C 0.303 3.697 19 O -0.384 6.384 20 N -0.322 5.322 21 C 0.052 3.948 22 C -0.141 4.141 23 C -0.118 4.118 24 C -0.155 4.155 25 C -0.121 4.121 26 C -0.168 4.168 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.248 0.752 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.248 0.752 40 H 0.154 0.846 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 32.776 -7.722 5.789 34.167 hybrid contribution 1.126 1.378 -0.773 1.940 sum 33.902 -6.343 5.016 34.853 Atomic orbital electron populations 1.69909 1.06274 1.26967 1.50727 1.25030 0.94768 0.99183 0.94470 0.86775 0.80378 0.83608 0.78495 1.20259 1.21274 1.19009 1.21133 0.89260 0.94763 1.51310 0.90725 1.19535 0.97323 0.90753 0.96750 1.21312 0.86608 1.02954 1.02828 1.30594 1.09541 1.23290 1.11279 1.05167 0.72499 0.77962 0.74243 1.93591 1.82600 1.73715 1.45164 1.93584 1.82778 1.72762 1.45632 1.55753 1.26851 1.78528 1.27401 1.21023 0.90825 0.98894 0.89253 1.21825 0.96087 1.03432 0.97397 1.20734 0.81579 0.79783 0.87614 1.90792 1.65097 1.38711 1.43812 1.43568 1.08536 1.59524 1.20573 1.17760 0.92738 0.98038 0.86313 1.21223 1.01116 1.01018 0.90780 1.21106 0.94786 0.97643 0.98295 1.21177 0.95203 1.01166 0.97985 1.20954 0.99847 0.99016 0.92252 1.20892 0.94702 1.01788 0.99411 0.92639 0.96130 0.96623 0.90979 0.90898 0.85350 0.85265 0.75224 0.89038 0.90586 0.87608 0.87341 0.75222 0.84617 0.85560 0.85920 0.85680 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.53 -15.11 9.66 -34.44 -0.33 -15.45 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C 0.00 -0.12 4.04 -27.89 -0.11 -0.23 16 10 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16 11 C -0.62 -8.74 6.07 37.15 0.23 -8.52 16 12 S 2.61 35.09 5.46 -107.50 -0.59 34.50 16 13 O -0.96 -15.66 18.08 -57.54 -1.04 -16.70 16 14 O -0.96 -16.13 17.50 -57.54 -1.01 -17.13 16 15 N -1.13 -9.95 5.89 -10.61 -0.06 -10.01 16 16 C 0.13 1.08 5.42 -4.04 -0.02 1.06 16 17 C -0.15 -0.76 5.84 -27.88 -0.16 -0.93 16 18 C 0.52 4.11 7.57 -10.99 -0.08 4.02 16 19 O -0.51 -6.22 13.66 5.55 0.08 -6.14 16 20 N -0.68 -4.03 5.34 -9.86 -0.05 -4.08 16 21 C 0.15 1.17 6.28 -83.69 -0.53 0.64 16 22 C -0.12 -1.14 8.66 -39.39 -0.34 -1.48 16 23 C -0.10 -0.79 10.04 -39.61 -0.40 -1.19 16 24 C -0.14 -0.92 10.04 -39.55 -0.40 -1.32 16 25 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 26 C -0.15 -0.95 9.96 -39.39 -0.39 -1.34 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 29 H 0.02 0.35 7.57 -51.92 -0.39 -0.04 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 33 H 0.13 1.56 8.14 -51.92 -0.42 1.14 16 34 H 0.41 2.58 8.62 -34.47 -0.30 2.28 16 35 H 0.09 0.93 7.65 -51.93 -0.40 0.54 16 36 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.41 0.95 8.82 -40.82 -0.36 0.59 16 40 H 0.14 1.44 6.40 -52.48 -0.34 1.10 16 41 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.12 0.51 8.06 -52.48 -0.42 0.09 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -39.48 384.11 -10.35 -49.82 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.39 Total: 0.01 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -3.18 Total: -25.94 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.66 Total: -41.22 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -1.97 Total: -39.98 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: 35.09 SS G_CDS: -0.59 Total: 34.50 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.48 -10.35 -49.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113302980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.543 kcal (2) G-P(sol) polarization free energy of solvation -39.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds