Wall clock time and date at job start Tue Mar 31 2020 23:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48506 * 109.47038 * 270.00547 * 3 2 1 5 5 H 1.48500 * 109.47188 * 29.99948 * 3 2 1 6 6 H 1.48495 * 109.47567 * 150.00231 * 3 2 1 7 7 C 1.37883 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99116 * 359.97438 * 7 2 1 9 9 C 1.50689 * 120.00204 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47210 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47314 * 179.97438 * 10 9 7 12 12 S 1.81396 * 109.47274 * 180.02562 * 11 10 9 13 13 O 1.42105 * 110.54536 * 68.37029 * 12 11 10 14 14 O 1.42101 * 110.54633 * 291.62392 * 12 11 10 15 15 N 1.65599 * 104.45269 * 179.97438 * 12 11 10 16 16 C 1.46499 * 119.99719 * 65.00154 * 15 12 11 17 17 C 1.53000 * 109.47457 * 164.99996 * 16 15 12 18 18 C 1.50701 * 109.47519 * 179.97438 * 17 16 15 19 19 O 1.21287 * 119.99646 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99846 * 179.97438 * 18 17 16 21 21 C 1.39924 * 119.99818 * 185.27752 * 20 18 17 22 22 C 1.38873 * 120.07282 * 33.33155 * 21 20 18 23 23 C 1.38106 * 119.93058 * 179.97438 * 22 21 20 24 24 C 1.38280 * 120.07473 * 359.97438 * 23 22 21 25 25 C 1.38282 * 120.13715 * 0.04477 * 24 23 22 26 26 C 1.38106 * 120.07234 * 359.95443 * 25 24 23 27 27 H 0.97000 * 120.00320 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47794 * 59.99450 * 9 7 2 29 29 H 1.09008 * 109.46852 * 299.99130 * 9 7 2 30 30 H 1.08998 * 109.47148 * 59.99686 * 10 9 7 31 31 H 1.08995 * 109.47014 * 299.99773 * 10 9 7 32 32 H 1.09002 * 109.47556 * 60.00003 * 11 10 9 33 33 H 1.09008 * 109.46986 * 299.99746 * 11 10 9 34 34 H 0.96998 * 120.00181 * 244.99707 * 15 12 11 35 35 H 1.09003 * 109.47708 * 44.99907 * 16 15 12 36 36 H 1.09003 * 109.47221 * 285.00170 * 16 15 12 37 37 H 1.09004 * 109.47248 * 59.99385 * 17 16 15 38 38 H 1.09003 * 109.47048 * 300.00280 * 17 16 15 39 39 H 0.97000 * 120.00137 * 5.27364 * 20 18 17 40 40 H 1.08005 * 120.03105 * 359.70896 * 22 21 20 41 41 H 1.08007 * 119.96089 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.92979 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.96391 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.03629 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6364 -0.0001 12 16 6.1563 -4.3466 -0.0010 13 8 5.8601 -4.9797 -1.2383 14 8 5.8603 -4.9809 1.2356 15 7 7.8059 -4.2017 -0.0017 16 6 8.4892 -3.6039 1.1481 17 6 9.9843 -3.9202 1.0741 18 6 10.6872 -3.3048 2.2565 19 8 10.0545 -2.6754 3.0779 20 7 12.0187 -3.4546 2.4018 21 6 12.6546 -2.9792 3.5539 22 6 11.9911 -2.9998 4.7738 23 6 12.6218 -2.5304 5.9092 24 6 13.9127 -2.0405 5.8326 25 6 14.5759 -2.0182 4.6194 26 6 13.9508 -2.4862 3.4803 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6806 0.8904 29 1 3.8752 -0.6796 -0.8896 30 1 3.6586 -3.1501 -0.8903 31 1 3.6580 -3.1505 0.8896 32 1 5.9150 -2.1227 0.8899 33 1 5.9149 -2.1225 -0.8902 34 1 8.3198 -4.5126 -0.7634 35 1 8.0762 -4.0140 2.0697 36 1 8.3453 -2.5234 1.1348 37 1 10.3973 -3.5101 0.1524 38 1 10.1281 -5.0006 1.0874 39 1 12.5361 -3.8920 1.7077 40 1 10.9815 -3.3787 4.8336 41 1 12.1061 -2.5458 6.8581 42 1 14.4034 -1.6736 6.7219 43 1 15.5839 -1.6346 4.5627 44 1 14.4692 -2.4681 2.5330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113302980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:53 Heat of formation + Delta-G solvation = -124.368383 kcal Electronic energy + Delta-G solvation = -25919.482227 eV Core-core repulsion = 21962.213632 eV Total energy + Delta-G solvation = -3957.268594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57964 -39.49438 -38.19373 -37.07980 -36.69930 -36.50591 -35.80972 -34.25427 -31.92288 -31.80435 -30.15948 -29.95571 -25.39707 -25.26513 -23.77960 -22.98516 -22.27558 -21.34617 -20.42180 -19.03042 -18.95188 -18.51875 -18.08239 -17.34511 -17.18892 -17.08771 -16.81496 -16.29135 -16.16253 -15.67025 -15.46208 -15.37713 -14.95402 -14.84000 -14.61162 -14.23782 -14.07570 -13.76484 -13.67127 -13.40051 -13.23504 -13.18872 -13.11596 -12.74606 -12.69207 -12.67083 -12.56035 -12.50665 -12.16631 -11.85727 -11.65175 -11.43491 -11.42116 -11.29589 -10.94010 -10.78566 -10.40501 -9.85932 -9.10479 -8.31069 -6.36779 -0.73655 0.30549 0.47417 1.35131 1.38166 1.49712 1.56098 1.68339 2.13272 2.35048 2.76802 2.90611 3.03845 3.25146 3.51675 3.72908 3.83263 3.95125 4.06216 4.08577 4.11607 4.31688 4.33639 4.43631 4.52622 4.54915 4.62007 4.63988 4.68462 4.84597 4.87708 4.95913 5.05770 5.11979 5.33713 5.36119 5.40557 5.45066 5.57207 5.61618 5.64409 6.10457 6.16322 6.24205 6.39959 6.71291 7.10359 7.27695 8.85782 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.002130 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.392428 B =13143.525638 C =14762.595490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.242 1.242 7 C -0.544 4.544 8 H 0.030 0.970 9 C -0.006 4.006 10 C -0.104 4.104 11 C -0.614 4.614 12 S 2.632 3.368 13 O -0.989 6.989 14 O -0.995 6.995 15 N -1.104 6.104 16 C 0.117 3.883 17 C -0.136 4.136 18 C 0.512 3.488 19 O -0.561 6.561 20 N -0.661 5.661 21 C 0.129 3.871 22 C -0.149 4.149 23 C -0.116 4.116 24 C -0.142 4.142 25 C -0.104 4.104 26 C -0.146 4.146 27 H 0.267 0.733 28 H 0.029 0.971 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.431 0.569 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.431 0.569 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.142 0.858 43 H 0.152 0.848 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.515 -6.289 3.909 39.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.197 4.197 3 Si 0.777 3.223 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.582 4.582 8 H 0.049 0.951 9 C -0.045 4.045 10 C -0.144 4.144 11 C -0.745 4.745 12 S 2.727 3.273 13 O -0.979 6.979 14 O -0.985 6.985 15 N -0.866 5.866 16 C -0.009 4.009 17 C -0.176 4.176 18 C 0.301 3.699 19 O -0.439 6.439 20 N -0.308 5.308 21 C 0.035 3.965 22 C -0.170 4.170 23 C -0.134 4.134 24 C -0.161 4.161 25 C -0.123 4.123 26 C -0.166 4.166 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.165 0.835 33 H 0.177 0.823 34 H 0.269 0.731 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.162 0.838 38 H 0.149 0.851 39 H 0.270 0.730 40 H 0.130 0.870 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.170 0.830 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 37.305 -6.571 4.590 38.157 hybrid contribution -0.251 0.927 -0.373 1.031 sum 37.054 -5.644 4.217 37.718 Atomic orbital electron populations 1.70079 1.08445 1.28293 1.52328 1.26114 0.95730 1.03869 0.93938 0.85591 0.79578 0.77664 0.79418 1.18746 1.21115 1.16511 1.21559 0.92352 0.93302 1.50968 0.95111 1.19513 0.93726 0.93637 0.97606 1.21176 0.90649 1.00328 1.02211 1.30532 1.05435 1.24712 1.13771 1.04106 0.73370 0.77135 0.72703 1.93549 1.83772 1.74402 1.46174 1.93543 1.84047 1.73652 1.47239 1.55172 1.24882 1.78316 1.28274 1.21136 0.92935 0.98989 0.87876 1.21820 0.93328 1.04846 0.97646 1.21231 0.81974 0.79053 0.87659 1.90781 1.66202 1.41182 1.45727 1.43445 1.08128 1.58858 1.20414 1.17953 0.93529 0.98615 0.86372 1.21220 1.00617 1.02750 0.92373 1.21284 0.95730 0.98158 0.98260 1.21471 0.94662 1.00668 0.99298 1.21364 1.00938 0.98143 0.91828 1.21225 0.93942 1.00667 1.00786 0.92426 0.95309 0.94981 0.91564 0.92039 0.83453 0.82347 0.73146 0.91294 0.90110 0.83778 0.85058 0.72983 0.86966 0.85138 0.83992 0.82999 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 2 C 0.00 0.01 5.47 84.66 0.46 0.48 16 3 Si 0.96 44.13 27.47 68.60 1.88 46.01 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 7 C -0.54 -32.05 9.66 25.60 0.25 -31.80 16 8 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 9 C -0.01 -0.29 4.04 29.85 0.12 -0.17 16 10 C -0.10 -4.05 5.16 30.59 0.16 -3.89 16 11 C -0.61 -16.16 6.07 71.98 0.44 -15.72 16 12 S 2.63 67.62 5.46 -56.49 -0.31 67.32 16 13 O -0.99 -31.13 18.08 -127.65 -2.31 -33.44 16 14 O -1.00 -33.49 17.50 -127.65 -2.23 -35.72 16 15 N -1.10 -16.49 5.89 -187.49 -1.10 -17.60 16 16 C 0.12 1.74 5.42 86.38 0.47 2.21 16 17 C -0.14 -0.98 5.84 29.85 0.17 -0.81 16 18 C 0.51 7.39 7.57 87.66 0.66 8.06 16 19 O -0.56 -13.82 13.66 -3.05 -0.04 -13.86 16 20 N -0.66 -6.58 5.34 -303.50 -1.62 -8.20 16 21 C 0.13 1.93 6.28 38.15 0.24 2.17 16 22 C -0.15 -2.91 8.66 22.39 0.19 -2.71 16 23 C -0.12 -1.88 10.04 22.25 0.22 -1.66 16 24 C -0.14 -1.73 10.04 22.29 0.22 -1.51 16 25 C -0.10 -1.04 10.04 22.25 0.22 -0.81 16 26 C -0.15 -1.52 9.96 22.39 0.22 -1.30 16 27 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 28 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 29 H 0.03 1.38 7.57 -2.38 -0.02 1.36 16 30 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.15 3.34 8.14 -2.39 -0.02 3.32 16 33 H 0.16 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.43 3.76 8.62 -96.75 -0.83 2.93 16 35 H 0.07 1.38 7.65 -2.39 -0.02 1.36 16 36 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 37 H 0.14 -0.01 8.14 -2.38 -0.02 -0.03 16 38 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.43 0.62 8.82 -92.71 -0.82 -0.20 16 40 H 0.11 2.64 6.40 -2.91 -0.02 2.62 16 41 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 43 H 0.15 0.65 8.06 -2.91 -0.02 0.62 16 44 H 0.15 0.66 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -90.46 384.11 -2.05 -92.52 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -0.68 Total: 10.87 kcal Atomic # 6 Polarization: -51.52 SS G_CDS: 4.06 Total: -47.46 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -2.43 Total: -86.22 kcal Atomic # 8 Polarization: -78.44 SS G_CDS: -4.58 Total: -83.03 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Atomic # 16 Polarization: 67.62 SS G_CDS: -0.31 Total: 67.32 kcal Total: -90.46 -2.05 -92.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113302980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.851 kcal (2) G-P(sol) polarization free energy of solvation -90.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds