Wall clock time and date at job start Tue Mar 31 2020 22:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99868 * 2 1 4 4 H 1.48502 * 109.47195 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47056 * 299.99613 * 3 2 1 6 6 H 1.48495 * 109.47546 * 59.99776 * 3 2 1 7 7 C 1.37875 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99981 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.34973 * 125.97429 * 124.99966 * 10 9 7 12 12 C 1.35230 * 107.86748 * 180.02562 * 11 10 9 13 13 C 1.40432 * 107.86588 * 359.97438 * 12 11 10 14 14 N 1.40029 * 125.97558 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00140 * 0.02562 * 14 13 12 16 16 O 1.21582 * 119.99974 * 359.97438 * 15 14 13 17 17 C 1.47545 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.29036 * 125.86427 * 359.97283 * 17 15 14 19 19 O 1.41387 * 112.88428 * 180.34556 * 18 17 15 20 20 C 1.44201 * 107.59230 * 342.50459 * 19 18 17 21 21 H 1.09005 * 110.97671 * 267.25202 * 20 19 18 22 22 C 1.50702 * 110.97671 * 143.51089 * 20 19 18 23 23 C 1.38234 * 120.00271 * 146.45139 * 22 20 19 24 24 C 1.38230 * 119.99880 * 179.97438 * 23 22 20 25 25 C 1.38235 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99485 * 326.43267 * 22 20 19 28 28 C 1.51687 * 125.86177 * 179.97438 * 17 15 14 29 29 N 1.31244 * 108.04942 * 0.26460 * 13 12 11 30 30 H 0.97002 * 120.00272 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47271 * 59.99772 * 9 7 2 32 32 H 1.08997 * 109.47426 * 300.00114 * 9 7 2 33 33 H 1.07999 * 126.06784 * 0.05740 * 11 10 9 34 34 H 1.08002 * 126.06338 * 180.02562 * 12 11 10 35 35 H 0.97005 * 120.00394 * 180.02562 * 14 13 12 36 36 H 1.08001 * 119.99769 * 359.97438 * 23 22 20 37 37 H 1.08000 * 120.00376 * 180.02562 * 24 23 22 38 38 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 39 39 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 40 40 H 1.07997 * 120.00489 * 0.02562 * 27 22 20 41 41 H 1.09009 * 110.79491 * 77.10623 * 28 17 15 42 42 H 1.08993 * 110.79491 * 313.63097 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.2421 -4.6216 0.8984 12 6 3.2609 -5.4419 0.5552 13 6 3.8692 -4.9151 -0.5958 14 7 4.9646 -5.4656 -1.2725 15 6 5.5295 -6.6048 -0.8258 16 8 5.0884 -7.1543 0.1649 17 6 6.6834 -7.1851 -1.5392 18 7 7.2403 -6.6995 -2.5970 19 8 8.3233 -7.4833 -3.0574 20 6 8.7256 -8.3485 -1.9762 21 1 9.5210 -7.8924 -1.3867 22 6 9.1487 -9.6988 -2.4947 23 6 10.1557 -10.3994 -1.8576 24 6 10.5434 -11.6381 -2.3330 25 6 9.9237 -12.1766 -3.4451 26 6 8.9160 -11.4765 -4.0816 27 6 8.5294 -10.2369 -3.6073 28 6 7.4186 -8.4550 -1.1549 29 7 3.2353 -3.8134 -0.9227 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5574 -0.8880 32 1 0.6247 -2.5563 0.8919 33 1 1.5773 -4.7511 1.7396 34 1 3.5542 -6.3428 1.0737 35 1 5.3169 -5.0270 -2.0628 36 1 10.6396 -9.9788 -0.9884 37 1 11.3299 -12.1857 -1.8350 38 1 10.2296 -13.1425 -3.8192 39 1 8.4321 -11.8969 -4.9508 40 1 7.7427 -9.6895 -4.1052 41 1 6.8482 -9.3363 -1.4484 42 1 7.6331 -8.4696 -0.0863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117712872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:45 Heat of formation + Delta-G solvation = 87.191110 kcal Electronic energy + Delta-G solvation = -27047.774037 eV Core-core repulsion = 22996.528151 eV Total energy + Delta-G solvation = -4051.245887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.43009 -41.79860 -40.56655 -39.61923 -36.46430 -35.41073 -34.51969 -33.58461 -32.75294 -31.81640 -31.02886 -30.02167 -28.75629 -26.32099 -25.16295 -24.54862 -23.52642 -22.63568 -22.12690 -21.67399 -20.72339 -18.82044 -18.71054 -18.32186 -18.19473 -17.37834 -17.09327 -16.89959 -16.66096 -16.26809 -16.02297 -15.74424 -15.50773 -15.40667 -14.76249 -14.48416 -14.40073 -14.27523 -14.24370 -13.89486 -13.87990 -13.75072 -13.48293 -12.99296 -12.96132 -12.74903 -12.36898 -12.32562 -12.16592 -12.01774 -11.93850 -11.78440 -11.47461 -11.33647 -10.88190 -10.73023 -9.85446 -9.84419 -9.75648 -9.22294 -8.34372 -6.47754 -0.43376 0.26846 0.47001 0.99595 1.04547 1.36584 1.38599 1.50528 1.54320 1.65499 2.17006 2.17534 2.35877 2.74804 2.98052 2.99778 3.10904 3.40688 3.60251 3.83690 3.88857 4.10215 4.12170 4.14842 4.21577 4.29923 4.49034 4.59531 4.61383 4.63512 4.73347 4.84556 4.89358 4.96691 5.00099 5.03436 5.13142 5.52080 5.53866 5.55988 5.60489 5.73791 5.77772 5.80905 6.05016 6.05969 6.24946 6.61295 6.64444 6.95813 7.22343 8.73689 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027392 B = 0.001787 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.962553 B =15668.456520 C =16150.082632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.271 3.729 10 N -0.339 5.339 11 C 0.061 3.939 12 C -0.288 4.288 13 C 0.259 3.741 14 N -0.609 5.609 15 C 0.602 3.398 16 O -0.505 6.505 17 C 0.063 3.937 18 N -0.254 5.254 19 O -0.185 6.185 20 C 0.086 3.914 21 H 0.121 0.879 22 C -0.104 4.104 23 C -0.106 4.106 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.130 4.130 27 C -0.114 4.114 28 C -0.117 4.117 29 N -0.342 5.342 30 H 0.273 0.727 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.207 0.793 34 H 0.176 0.824 35 H 0.426 0.574 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.115 -25.061 -2.390 32.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.152 3.848 10 N -0.121 5.121 11 C -0.087 4.087 12 C -0.319 4.319 13 C 0.005 3.995 14 N -0.258 5.258 15 C 0.385 3.615 16 O -0.376 6.376 17 C -0.132 4.132 18 N 0.003 4.997 19 O -0.209 6.209 20 C 0.028 3.972 21 H 0.139 0.861 22 C -0.105 4.105 23 C -0.124 4.124 24 C -0.142 4.142 25 C -0.135 4.135 26 C -0.148 4.148 27 C -0.132 4.132 28 C -0.156 4.156 29 N -0.173 5.173 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.224 0.776 34 H 0.193 0.807 35 H 0.263 0.737 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.154 0.846 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 19.546 -23.483 -3.407 30.743 hybrid contribution 0.226 0.161 0.372 0.464 sum 19.772 -23.322 -3.035 30.726 Atomic orbital electron populations 1.69990 1.07129 1.28703 1.49954 1.25704 0.95829 1.02633 0.93908 0.85320 0.78382 0.78528 0.78298 1.20038 1.19980 1.19406 1.21430 0.93395 0.91019 1.52793 0.92982 1.19396 0.85621 0.81382 0.98399 1.48903 1.23336 1.20395 1.19505 1.23250 1.00344 0.88564 0.96584 1.21745 1.02009 1.06845 1.01251 1.19285 0.91483 0.93738 0.94947 1.42303 1.28598 1.24545 1.30355 1.16931 0.81380 0.79567 0.83582 1.90781 1.61661 1.60325 1.24798 1.25570 0.95435 0.96839 0.95327 1.78490 0.97962 1.13362 1.09877 1.91307 1.43060 1.51750 1.34739 1.22768 0.97222 0.89641 0.87578 0.86095 1.19493 0.98895 0.94173 0.97917 1.21225 0.95592 0.95324 1.00234 1.21484 1.00386 0.95537 0.96747 1.21580 0.95582 1.00678 0.95703 1.21412 0.98099 0.94553 1.00721 1.21095 0.99834 0.96086 0.96172 1.22971 0.92825 0.94343 1.05458 1.77307 1.04576 1.17722 1.17667 0.91830 0.95909 0.91892 0.77615 0.80681 0.73654 0.83551 0.83332 0.83780 0.84587 0.86727 0.86292 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.66 13.29 21.45 0.28 -51.37 16 2 C 0.02 1.09 5.46 84.65 0.46 1.55 16 3 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -30.73 9.23 25.60 0.24 -30.49 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.27 13.80 6.26 85.63 0.54 14.33 16 10 N -0.34 -15.55 3.67 -351.86 -1.29 -16.84 16 11 C 0.06 2.28 11.43 83.52 0.95 3.23 16 12 C -0.29 -10.51 9.60 22.11 0.21 -10.30 16 13 C 0.26 10.13 8.10 133.37 1.08 11.21 16 14 N -0.61 -19.01 5.44 -310.42 -1.69 -20.70 16 15 C 0.60 16.35 7.79 86.70 0.68 17.02 16 16 O -0.51 -15.22 14.08 -3.98 -0.06 -15.28 16 17 C 0.06 1.35 7.28 45.74 0.33 1.68 16 18 N -0.25 -5.95 12.15 -42.32 -0.51 -6.46 16 19 O -0.19 -4.05 11.43 -38.31 -0.44 -4.49 16 20 C 0.09 1.28 4.01 30.44 0.12 1.41 16 21 H 0.12 1.36 8.08 -2.38 -0.02 1.34 16 22 C -0.10 -1.47 5.00 -19.87 -0.10 -1.57 16 23 C -0.11 -1.11 9.70 22.27 0.22 -0.90 16 24 C -0.12 -1.13 10.05 22.27 0.22 -0.91 16 25 C -0.12 -1.17 10.05 22.27 0.22 -0.95 16 26 C -0.13 -1.64 10.05 22.27 0.22 -1.41 16 27 C -0.11 -1.78 9.38 22.27 0.21 -1.57 16 28 C -0.12 -1.74 6.44 30.75 0.20 -1.54 16 29 N -0.34 -15.79 12.42 -54.51 -0.68 -16.47 16 30 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 3.10 8.07 -2.39 -0.02 3.08 16 33 H 0.21 5.85 8.06 -2.91 -0.02 5.83 16 34 H 0.18 5.87 5.91 -2.91 -0.02 5.85 16 35 H 0.43 12.15 8.50 -92.70 -0.79 11.37 16 36 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 37 H 0.15 0.63 8.06 -2.91 -0.02 0.60 16 38 H 0.14 0.77 8.06 -2.91 -0.02 0.74 16 39 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.11 1.97 7.65 -2.91 -0.02 1.95 16 41 H 0.12 1.66 7.90 -2.38 -0.02 1.64 16 42 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -68.96 371.96 3.74 -65.22 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.29 Total: 19.96 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 5.81 Total: 0.79 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -3.89 Total: -111.84 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.49 Total: -19.76 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.96 3.74 -65.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117712872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.413 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds