Wall clock time and date at job start Tue Mar 31 2020 23:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00100 * 2 1 4 4 H 1.48506 * 109.47206 * 240.00441 * 3 2 1 5 5 H 1.48497 * 109.47260 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47203 * 120.00611 * 3 2 1 7 7 C 1.38951 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00140 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99792 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00453 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99674 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47082 * 180.02562 * 12 10 9 14 14 C 1.47009 * 110.99635 * 287.81801 * 13 12 10 15 15 C 1.53101 * 109.25751 * 177.61021 * 14 13 12 16 16 O 1.43019 * 109.26182 * 56.84665 * 15 14 13 17 17 C 1.43015 * 113.73695 * 301.33593 * 16 15 14 18 18 C 1.47022 * 110.99815 * 164.18567 * 13 12 10 19 19 H 1.08999 * 109.50674 * 62.41378 * 18 13 12 20 20 C 1.52997 * 109.50564 * 302.32075 * 18 13 12 21 21 C 1.52994 * 109.47083 * 177.64949 * 20 18 13 22 22 H 1.08999 * 109.47062 * 55.94179 * 21 20 18 23 23 O 1.42901 * 109.47386 * 295.94173 * 21 20 18 24 24 C 1.50707 * 109.47376 * 175.93726 * 21 20 18 25 25 C 1.33389 * 125.20099 * 264.72195 * 24 21 20 26 26 C 1.38426 * 114.91711 * 179.85546 * 25 24 21 27 27 C 1.33391 * 114.92202 * 0.43010 * 26 25 24 28 28 S 1.75882 * 125.20245 * 85.02553 * 24 21 20 29 29 H 0.96999 * 119.99732 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99433 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47669 * 59.99781 * 12 10 9 32 32 H 1.09002 * 109.46947 * 299.99894 * 12 10 9 33 33 H 1.09003 * 109.50903 * 297.53697 * 14 13 12 34 34 H 1.08994 * 109.51157 * 57.63426 * 14 13 12 35 35 H 1.09006 * 109.50799 * 176.78118 * 15 14 13 36 36 H 1.09001 * 109.50608 * 296.86725 * 15 14 13 37 37 H 1.09000 * 109.50614 * 298.73136 * 17 16 15 38 38 H 1.08996 * 109.50658 * 178.60035 * 17 16 15 39 39 H 1.09010 * 109.47032 * 57.65162 * 20 18 13 40 40 H 1.09002 * 109.47291 * 297.65330 * 20 18 13 41 41 H 0.96707 * 113.99268 * 295.17672 * 23 21 20 42 42 H 1.08002 * 122.54287 * 0.02562 * 25 24 21 43 43 H 1.07993 * 122.53749 * 180.20294 * 26 25 24 44 44 H 1.08001 * 125.20533 * 179.74368 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0004 14 6 2.8609 -6.1069 -1.3065 15 6 3.8874 -7.2411 -1.2435 16 8 3.2319 -8.4493 -0.8487 17 6 2.5765 -8.3608 0.4194 18 6 1.5366 -7.2381 0.3732 19 1 0.7715 -7.4799 -0.3645 20 6 0.8883 -7.0852 1.7505 21 6 0.1504 -8.3755 2.1129 22 1 0.8427 -9.2160 2.0639 23 8 -0.9210 -8.5865 1.1912 24 6 -0.4036 -8.2621 3.5099 25 6 0.1959 -8.7110 4.6136 26 6 -0.5033 -8.4907 5.7878 27 6 -1.6748 -7.8711 5.6365 28 16 -1.9430 -7.5243 3.9332 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6174 -4.9205 -0.8913 32 1 0.6168 -4.9208 0.8886 33 1 2.1174 -6.3312 -2.0715 34 1 3.3650 -5.1722 -1.5518 35 1 4.3405 -7.3770 -2.2256 36 1 4.6610 -6.9918 -0.5171 37 1 3.3115 -8.1445 1.1947 38 1 2.0814 -9.3065 0.6400 39 1 0.1811 -6.2559 1.7292 40 1 1.6593 -6.8862 2.4949 41 1 -1.6142 -7.9135 1.2333 42 1 1.1555 -9.2061 4.5931 43 1 -0.1304 -8.8006 6.7528 44 1 -2.3549 -7.6210 6.4374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121697111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:54 Heat of formation + Delta-G solvation = -106.862926 kcal Electronic energy + Delta-G solvation = -27715.251070 eV Core-core repulsion = 23758.741569 eV Total energy + Delta-G solvation = -3956.509501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.23371 -39.83656 -39.27629 -37.83394 -36.71449 -35.82965 -33.82737 -33.27559 -31.48274 -30.40341 -28.67225 -27.19550 -25.94360 -25.34416 -24.05724 -22.72454 -21.33850 -20.89162 -20.38257 -19.88649 -18.89841 -18.03159 -17.35086 -17.30819 -17.11794 -16.62866 -16.50665 -16.24856 -15.92544 -15.72195 -15.44234 -15.38201 -15.10580 -14.69398 -14.44612 -14.14623 -13.92212 -13.86590 -13.55169 -13.46630 -13.13164 -13.00545 -12.92093 -12.66745 -12.43489 -12.39459 -12.22593 -12.13155 -12.02734 -11.68621 -11.47806 -11.39822 -11.29090 -10.69299 -10.26388 -10.00376 -9.61436 -9.40242 -9.30450 -8.46235 -5.94884 0.03417 0.65450 1.05141 1.39254 1.41234 1.51895 1.81892 2.04723 2.26543 2.56625 2.87830 3.19719 3.30118 3.37637 3.52132 3.70189 3.89030 4.00849 4.13728 4.14495 4.21264 4.23298 4.26657 4.36593 4.41457 4.47052 4.54479 4.62763 4.67578 4.70456 4.79377 4.87912 4.89515 4.99531 5.13568 5.20369 5.35046 5.40700 5.55729 5.79082 5.98815 6.06406 6.17850 6.52353 6.60521 7.13048 7.56260 8.12018 8.70962 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009394 B = 0.003357 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.858258 B = 8338.308118 C =10597.739211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.443 3.557 11 O -0.612 6.612 12 C 0.053 3.947 13 N -0.523 5.523 14 C 0.023 3.977 15 C 0.072 3.928 16 O -0.395 6.395 17 C 0.068 3.932 18 C 0.058 3.942 19 H 0.055 0.945 20 C -0.135 4.135 21 C 0.189 3.811 22 H 0.131 0.869 23 O -0.558 6.558 24 C -0.225 4.225 25 C -0.134 4.134 26 C -0.143 4.143 27 C -0.215 4.215 28 S 0.088 5.912 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.380 0.620 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 -19.362 7.787 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.231 3.769 11 O -0.498 6.498 12 C -0.078 4.078 13 N -0.248 5.248 14 C -0.105 4.105 15 C -0.005 4.005 16 O -0.313 6.313 17 C -0.009 4.009 18 C -0.050 4.050 19 H 0.073 0.927 20 C -0.173 4.173 21 C 0.127 3.873 22 H 0.148 0.852 23 O -0.365 6.365 24 C -0.342 4.342 25 C -0.165 4.165 26 C -0.174 4.174 27 C -0.351 4.351 28 S 0.351 5.649 29 H 0.087 0.913 30 H 0.228 0.772 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.134 0.866 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.229 0.771 42 H 0.175 0.825 43 H 0.179 0.821 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.371 -19.095 7.058 20.821 hybrid contribution -0.039 1.234 0.578 1.363 sum -4.411 -17.861 7.636 19.919 Atomic orbital electron populations 1.69665 1.06817 1.29307 1.50362 1.26003 0.96504 1.02302 0.96302 0.85019 0.77791 0.76781 0.78937 1.19722 1.19514 1.19738 1.19615 0.92673 0.83956 1.49965 0.90299 1.41915 1.09230 1.04678 1.65340 1.20672 0.88299 0.85720 0.82255 1.90470 1.15539 1.87764 1.56044 1.21819 0.93786 0.88892 1.03293 1.61760 1.30038 1.02977 1.30058 1.22771 0.97855 1.00555 0.89347 1.22648 0.93368 0.82744 1.01705 1.87938 1.70812 1.34828 1.37739 1.22900 0.93895 0.98479 0.85631 1.22250 0.95936 0.89577 0.97239 0.92738 1.22338 1.00571 0.98097 0.96304 1.20379 0.87862 0.97902 0.81144 0.85170 1.86610 1.34732 1.54433 1.60682 1.25493 1.00189 1.07917 1.00625 1.20410 1.02470 1.02527 0.91092 1.20490 0.94826 1.01603 1.00440 1.25963 1.02897 1.07355 0.98849 1.84269 1.19087 1.58616 1.02883 0.91332 0.77160 0.91911 0.87088 0.94307 0.90956 0.86584 0.92784 0.92109 0.86188 0.91079 0.89843 0.77091 0.82467 0.82130 0.79968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.33 -18.86 9.68 84.04 0.81 -18.04 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -29.49 5.29 -306.98 -1.62 -31.11 16 10 C 0.44 21.13 7.51 87.66 0.66 21.79 16 11 O -0.61 -33.59 14.42 -3.06 -0.04 -33.63 16 12 C 0.05 1.87 5.30 85.56 0.45 2.32 16 13 N -0.52 -17.06 4.16 -874.53 -3.64 -20.70 16 14 C 0.02 0.74 5.30 86.32 0.46 1.20 16 15 C 0.07 1.97 7.01 72.02 0.50 2.48 16 16 O -0.39 -10.57 10.83 -148.98 -1.61 -12.19 16 17 C 0.07 1.54 5.91 72.02 0.43 1.96 16 18 C 0.06 1.45 2.00 44.92 0.09 1.54 16 19 H 0.05 1.42 7.73 -2.39 -0.02 1.40 16 20 C -0.13 -2.90 4.23 30.59 0.13 -2.77 16 21 C 0.19 3.34 3.23 29.85 0.10 3.43 16 22 H 0.13 1.96 6.37 -2.39 -0.02 1.94 16 23 O -0.56 -10.73 12.74 -148.98 -1.90 -12.63 16 24 C -0.22 -4.05 5.52 24.59 0.14 -3.92 16 25 C -0.13 -2.20 10.05 21.22 0.21 -1.99 16 26 C -0.14 -2.18 10.18 21.22 0.22 -1.96 16 27 C -0.22 -3.37 11.23 66.72 0.75 -2.62 16 28 S 0.09 1.56 22.40 -56.49 -1.27 0.29 16 29 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.39 19.33 7.90 -92.71 -0.73 18.60 16 31 H 0.06 2.06 8.05 -2.39 -0.02 2.04 16 32 H 0.11 3.48 5.49 -2.39 -0.01 3.46 16 33 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 2.84 6.41 -2.39 -0.02 2.82 16 35 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.12 2.10 6.58 -2.39 -0.02 2.09 16 39 H 0.07 1.62 5.94 -2.38 -0.01 1.61 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.38 6.03 8.22 -74.05 -0.61 5.42 16 42 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -69.08 369.44 -2.65 -71.73 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: -0.29 Total: 39.36 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.41 Total: 3.29 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -4.98 Total: -101.13 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -3.56 Total: -58.44 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.27 Total: 0.29 kcal Total: -69.08 -2.65 -71.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121697111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.132 kcal (2) G-P(sol) polarization free energy of solvation -69.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds