Wall clock time and date at job start Tue Mar 31 2020 22:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99889 * 2 1 4 4 H 1.48494 * 109.47291 * 184.76681 * 3 2 1 5 5 H 1.48499 * 109.47120 * 304.76939 * 3 2 1 6 6 H 1.48507 * 109.47157 * 64.76566 * 3 2 1 7 7 C 1.37871 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99614 * 175.65595 * 7 2 1 9 9 C 1.50705 * 120.00288 * 355.65797 * 7 2 1 10 10 C 1.53007 * 109.46706 * 183.76197 * 9 7 2 11 11 H 1.08993 * 109.47448 * 303.32916 * 10 9 7 12 12 N 1.46499 * 109.47135 * 63.33700 * 10 9 7 13 13 S 1.65599 * 119.99938 * 212.74114 * 12 10 9 14 14 O 1.42105 * 106.39883 * 178.25676 * 13 12 10 15 15 O 1.42097 * 106.40325 * 311.18155 * 13 12 10 16 16 N 1.65604 * 107.21558 * 64.72315 * 13 12 10 17 17 C 1.47152 * 120.97640 * 273.91543 * 16 13 12 18 18 C 1.53717 * 108.15786 * 129.43756 * 17 16 13 19 19 O 1.42959 * 109.15086 * 52.53695 * 18 17 16 20 20 C 1.42966 * 114.16448 * 297.29206 * 19 18 17 21 21 C 1.47147 * 120.98409 * 94.20497 * 16 13 12 22 22 C 1.50700 * 109.46559 * 183.33022 * 10 9 7 23 23 C 1.38233 * 119.99685 * 100.00441 * 22 10 9 24 24 C 1.38239 * 120.00319 * 179.97438 * 23 22 10 25 25 C 1.38246 * 119.99539 * 359.97438 * 24 23 22 26 26 C 1.38228 * 119.99919 * 0.08104 * 25 24 23 27 27 C 1.38233 * 120.00355 * 279.98086 * 22 10 9 28 28 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46853 * 63.76503 * 9 7 2 30 30 H 1.08996 * 109.46852 * 303.76419 * 9 7 2 31 31 H 0.97003 * 120.00065 * 32.73629 * 12 10 9 32 32 H 1.09000 * 109.68564 * 249.21288 * 17 16 13 33 33 H 1.09004 * 109.68482 * 9.77259 * 17 16 13 34 34 H 1.09004 * 109.65607 * 292.56670 * 18 17 16 35 35 H 1.09004 * 109.48497 * 172.39784 * 18 17 16 36 36 H 1.09004 * 109.51145 * 302.65285 * 20 19 18 37 37 H 1.09004 * 109.55366 * 182.52903 * 20 19 18 38 38 H 1.09000 * 109.68437 * 350.22889 * 21 16 13 39 39 H 1.08999 * 109.68337 * 110.75202 * 21 16 13 40 40 H 1.08001 * 120.00502 * 359.97389 * 23 22 10 41 41 H 1.07999 * 120.00255 * 179.72802 * 24 23 22 42 42 H 1.07995 * 119.99572 * 179.97438 * 25 24 23 43 43 H 1.08005 * 120.00193 * 179.97438 * 26 25 24 44 44 H 1.08005 * 119.99869 * 359.97438 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7049 1.3489 -0.1163 5 1 1.8052 2.4456 -1.1501 6 1 1.9797 2.3449 1.2665 7 6 2.0045 -1.1940 -0.0005 8 1 3.0822 -1.1953 -0.0714 9 6 1.2543 -2.4973 0.0977 10 6 2.2515 -3.6555 0.1705 11 1 2.9090 -3.6240 -0.6982 12 7 3.0505 -3.5359 1.3925 13 16 4.6260 -4.0456 1.4049 14 8 5.1298 -3.7606 2.7027 15 8 4.6306 -5.3487 0.8382 16 7 5.4631 -3.0762 0.3552 17 6 5.5222 -3.3890 -1.0815 18 6 5.1368 -2.1231 -1.8637 19 8 5.9459 -1.0320 -1.4183 20 6 5.7621 -0.6906 -0.0422 21 6 6.1749 -1.8800 0.8324 22 6 1.5023 -4.9630 0.1863 23 6 1.3808 -5.7039 -0.9744 24 6 0.6940 -6.9036 -0.9600 25 6 0.1292 -7.3626 0.2154 26 6 0.2498 -6.6211 1.3758 27 6 0.9371 -5.4217 1.3614 28 1 -0.4850 0.8400 0.0004 29 1 0.6201 -2.6185 -0.7805 30 1 0.6355 -2.4936 0.9950 31 1 2.6567 -3.1580 2.1945 32 1 6.5334 -3.6957 -1.3492 33 1 4.8216 -4.1917 -1.3116 34 1 4.0858 -1.8913 -1.6911 35 1 5.3029 -2.2888 -2.9282 36 1 4.7134 -0.4535 0.1371 37 1 6.3782 0.1740 0.2047 38 1 5.9067 -1.6829 1.8704 39 1 7.2507 -2.0375 0.7548 40 1 1.8223 -5.3456 -1.8926 41 1 0.5953 -7.4803 -1.8677 42 1 -0.4076 -8.2996 0.2266 43 1 -0.1917 -6.9794 2.2940 44 1 1.0327 -4.8432 2.2684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124552039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:08 Heat of formation + Delta-G solvation = -94.662377 kcal Electronic energy + Delta-G solvation = -29739.097114 eV Core-core repulsion = 25783.116669 eV Total energy + Delta-G solvation = -3955.980445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.13549 -38.90664 -36.98493 -35.77030 -35.55630 -34.57445 -32.75536 -31.20658 -30.73219 -30.34266 -28.67815 -26.85840 -24.90131 -24.03319 -22.38886 -22.01352 -21.30095 -20.28041 -19.04179 -17.88225 -17.37535 -16.71795 -16.30343 -16.18985 -15.71442 -15.16291 -15.09459 -14.82745 -14.80677 -14.52822 -14.32448 -14.01666 -13.61476 -13.16910 -12.98243 -12.72714 -12.47127 -12.38672 -12.15550 -11.97174 -11.89365 -11.79655 -11.52991 -11.32551 -11.29230 -11.21178 -10.89837 -10.77251 -10.70843 -10.59226 -10.28486 -10.21996 -9.78697 -9.29638 -8.92902 -8.60443 -8.56043 -8.51420 -8.22560 -6.16914 -4.20412 0.89303 1.75518 1.78541 3.09880 3.19751 3.27600 3.29768 3.84562 4.06804 4.18972 4.31223 4.57181 4.84007 4.99044 5.19324 5.20073 5.21187 5.28368 5.33839 5.35160 5.39062 5.46797 5.54221 5.61050 5.71122 5.74646 5.86315 5.89488 6.04938 6.10516 6.22636 6.25285 6.31313 6.43377 6.49890 6.61648 6.80758 6.83468 7.05198 7.35218 7.36964 7.38457 7.48614 7.63126 7.80545 8.17700 8.84343 9.44046 10.93553 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.006302 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.702414 B = 4441.784307 C = 6044.949876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.880 3.120 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.064 0.936 9 C 0.027 3.973 10 C 0.197 3.803 11 H 0.075 0.925 12 N -1.100 6.100 13 S 2.785 3.215 14 O -0.989 6.989 15 O -0.977 6.977 16 N -1.006 6.006 17 C 0.091 3.909 18 C 0.037 3.963 19 O -0.379 6.379 20 C 0.036 3.964 21 C 0.094 3.906 22 C -0.078 4.078 23 C -0.111 4.111 24 C -0.121 4.121 25 C -0.132 4.132 26 C -0.124 4.124 27 C -0.104 4.104 28 H 0.261 0.739 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.417 0.583 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.557 -7.705 -1.169 10.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.707 3.293 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.082 0.918 9 C -0.011 4.011 10 C 0.090 3.910 11 H 0.093 0.907 12 N -0.861 5.861 13 S 2.793 3.207 14 O -0.973 6.973 15 O -0.960 6.960 16 N -0.846 5.846 17 C -0.035 4.035 18 C -0.041 4.041 19 O -0.297 6.297 20 C -0.042 4.042 21 C -0.032 4.032 22 C -0.079 4.079 23 C -0.129 4.129 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.142 4.142 27 C -0.122 4.122 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.252 0.748 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.996 -8.292 -0.932 10.888 hybrid contribution -0.197 1.346 0.312 1.396 sum 6.799 -6.945 -0.620 9.739 Atomic orbital electron populations 1.69967 1.06036 1.26695 1.49905 1.24960 0.94735 0.99074 0.95162 0.86764 0.80574 0.84208 0.77704 1.18861 1.21162 1.21040 1.21198 0.93313 0.90317 1.51170 0.91816 1.19391 0.93149 0.89993 0.98598 1.19955 0.93681 0.92782 0.84553 0.90670 1.55700 1.29390 1.80129 1.20861 1.01838 0.72814 0.73557 0.72466 1.93573 1.79432 1.85763 1.38537 1.93608 1.86804 1.36219 1.79396 1.58142 1.66461 1.40870 1.19142 1.22149 1.02947 0.98461 0.79894 1.23208 0.96982 0.85764 0.98188 1.87873 1.64852 1.51200 1.25785 1.23207 1.03395 0.95927 0.81692 1.22020 0.96958 0.85018 0.99229 1.20531 0.97554 0.96323 0.93541 1.20956 0.99527 0.94670 0.97769 1.21021 0.98654 0.96470 0.97812 1.21010 1.00970 0.99821 0.93259 1.21071 0.99728 0.95404 0.98005 1.20921 0.97330 0.95923 0.98025 0.92907 0.95116 0.95304 0.74809 0.90788 0.88894 0.89955 0.88343 0.90099 0.88562 0.88502 0.90933 0.86289 0.86553 0.86786 0.86631 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.20 13.29 55.43 0.74 -23.46 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.88 19.49 29.43 -169.99 -5.00 14.49 16 4 H -0.26 -5.47 5.94 56.52 0.34 -5.14 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.52 -12.20 8.66 -34.44 -0.30 -12.50 16 8 H 0.06 1.39 4.16 -52.49 -0.22 1.17 16 9 C 0.03 0.59 4.56 -27.88 -0.13 0.46 16 10 C 0.20 3.54 2.35 -69.08 -0.16 3.37 16 11 H 0.08 1.28 5.87 -51.93 -0.30 0.97 16 12 N -1.10 -18.67 4.48 -5.88 -0.03 -18.69 16 13 S 2.79 47.17 6.06 -107.50 -0.65 46.52 16 14 O -0.99 -18.56 16.81 -57.17 -0.96 -19.52 16 15 O -0.98 -18.35 16.83 -57.17 -0.96 -19.31 16 16 N -1.01 -15.20 3.39 -112.82 -0.38 -15.58 16 17 C 0.09 1.23 5.89 -3.31 -0.02 1.21 16 18 C 0.04 0.52 7.00 37.53 0.26 0.78 16 19 O -0.38 -5.97 10.74 -35.23 -0.38 -6.35 16 20 C 0.04 0.54 6.98 37.31 0.26 0.80 16 21 C 0.09 1.31 6.59 -3.54 -0.02 1.29 16 22 C -0.08 -1.35 4.95 -104.63 -0.52 -1.87 16 23 C -0.11 -1.76 9.67 -39.58 -0.38 -2.15 16 24 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 25 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 26 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 27 C -0.10 -1.72 9.32 -39.58 -0.37 -2.09 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.42 6.81 8.69 -34.47 -0.30 6.51 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.21 6.46 -51.93 -0.34 0.87 16 34 H 0.08 1.33 6.34 -51.93 -0.33 1.00 16 35 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.42 4.61 -51.93 -0.24 1.18 16 37 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.10 1.34 7.13 -51.93 -0.37 0.97 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 43 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 44 H 0.12 1.86 7.62 -52.48 -0.40 1.46 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -31.01 363.02 -10.75 -41.76 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.92 Total: 10.46 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -2.67 Total: -15.79 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.33 Total: -57.74 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -2.30 Total: -45.18 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.00 Total: 14.49 kcal Atomic # 16 Polarization: 47.17 SS G_CDS: -0.65 Total: 46.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.01 -10.75 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124552039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.899 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds