Wall clock time and date at job start Tue Mar 31 2020 22:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99889 * 2 1 4 4 H 1.48494 * 109.47291 * 184.76681 * 3 2 1 5 5 H 1.48499 * 109.47120 * 304.76939 * 3 2 1 6 6 H 1.48507 * 109.47157 * 64.76566 * 3 2 1 7 7 C 1.37871 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99614 * 175.65595 * 7 2 1 9 9 C 1.50705 * 120.00288 * 355.65797 * 7 2 1 10 10 C 1.53007 * 109.46706 * 183.76197 * 9 7 2 11 11 H 1.08993 * 109.47448 * 303.32916 * 10 9 7 12 12 N 1.46499 * 109.47135 * 63.33700 * 10 9 7 13 13 S 1.65599 * 119.99938 * 212.74114 * 12 10 9 14 14 O 1.42105 * 106.39883 * 178.25676 * 13 12 10 15 15 O 1.42097 * 106.40325 * 311.18155 * 13 12 10 16 16 N 1.65604 * 107.21558 * 64.72315 * 13 12 10 17 17 C 1.47152 * 120.97640 * 273.91543 * 16 13 12 18 18 C 1.53717 * 108.15786 * 129.43756 * 17 16 13 19 19 O 1.42959 * 109.15086 * 52.53695 * 18 17 16 20 20 C 1.42966 * 114.16448 * 297.29206 * 19 18 17 21 21 C 1.47147 * 120.98409 * 94.20497 * 16 13 12 22 22 C 1.50700 * 109.46559 * 183.33022 * 10 9 7 23 23 C 1.38233 * 119.99685 * 100.00441 * 22 10 9 24 24 C 1.38239 * 120.00319 * 179.97438 * 23 22 10 25 25 C 1.38246 * 119.99539 * 359.97438 * 24 23 22 26 26 C 1.38228 * 119.99919 * 0.08104 * 25 24 23 27 27 C 1.38233 * 120.00355 * 279.98086 * 22 10 9 28 28 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46853 * 63.76503 * 9 7 2 30 30 H 1.08996 * 109.46852 * 303.76419 * 9 7 2 31 31 H 0.97003 * 120.00065 * 32.73629 * 12 10 9 32 32 H 1.09000 * 109.68564 * 249.21288 * 17 16 13 33 33 H 1.09004 * 109.68482 * 9.77259 * 17 16 13 34 34 H 1.09004 * 109.65607 * 292.56670 * 18 17 16 35 35 H 1.09004 * 109.48497 * 172.39784 * 18 17 16 36 36 H 1.09004 * 109.51145 * 302.65285 * 20 19 18 37 37 H 1.09004 * 109.55366 * 182.52903 * 20 19 18 38 38 H 1.09000 * 109.68437 * 350.22889 * 21 16 13 39 39 H 1.08999 * 109.68337 * 110.75202 * 21 16 13 40 40 H 1.08001 * 120.00502 * 359.97389 * 23 22 10 41 41 H 1.07999 * 120.00255 * 179.72802 * 24 23 22 42 42 H 1.07995 * 119.99572 * 179.97438 * 25 24 23 43 43 H 1.08005 * 120.00193 * 179.97438 * 26 25 24 44 44 H 1.08005 * 119.99869 * 359.97438 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7049 1.3489 -0.1163 5 1 1.8052 2.4456 -1.1501 6 1 1.9797 2.3449 1.2665 7 6 2.0045 -1.1940 -0.0005 8 1 3.0822 -1.1953 -0.0714 9 6 1.2543 -2.4973 0.0977 10 6 2.2515 -3.6555 0.1705 11 1 2.9090 -3.6240 -0.6982 12 7 3.0505 -3.5359 1.3925 13 16 4.6260 -4.0456 1.4049 14 8 5.1298 -3.7606 2.7027 15 8 4.6306 -5.3487 0.8382 16 7 5.4631 -3.0762 0.3552 17 6 5.5222 -3.3890 -1.0815 18 6 5.1368 -2.1231 -1.8637 19 8 5.9459 -1.0320 -1.4183 20 6 5.7621 -0.6906 -0.0422 21 6 6.1749 -1.8800 0.8324 22 6 1.5023 -4.9630 0.1863 23 6 1.3808 -5.7039 -0.9744 24 6 0.6940 -6.9036 -0.9600 25 6 0.1292 -7.3626 0.2154 26 6 0.2498 -6.6211 1.3758 27 6 0.9371 -5.4217 1.3614 28 1 -0.4850 0.8400 0.0004 29 1 0.6201 -2.6185 -0.7805 30 1 0.6355 -2.4936 0.9950 31 1 2.6567 -3.1580 2.1945 32 1 6.5334 -3.6957 -1.3492 33 1 4.8216 -4.1917 -1.3116 34 1 4.0858 -1.8913 -1.6911 35 1 5.3029 -2.2888 -2.9282 36 1 4.7134 -0.4535 0.1371 37 1 6.3782 0.1740 0.2047 38 1 5.9067 -1.6829 1.8704 39 1 7.2507 -2.0375 0.7548 40 1 1.8223 -5.3456 -1.8926 41 1 0.5953 -7.4803 -1.8677 42 1 -0.4076 -8.2996 0.2266 43 1 -0.1917 -6.9794 2.2940 44 1 1.0327 -4.8432 2.2684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124552039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:07 Heat of formation + Delta-G solvation = -116.402192 kcal Electronic energy + Delta-G solvation = -29740.039823 eV Core-core repulsion = 25783.116669 eV Total energy + Delta-G solvation = -3956.923155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.35916 -40.06933 -38.40346 -37.19663 -36.98853 -35.76050 -34.61657 -32.32500 -31.97198 -31.54144 -30.36398 -28.03538 -26.53680 -25.16457 -23.80993 -23.32148 -22.50212 -21.64516 -20.33114 -19.16355 -18.82032 -18.28077 -17.71809 -17.43798 -17.03070 -16.48167 -16.29245 -16.26114 -16.01299 -15.92831 -15.58805 -15.22589 -14.92238 -14.53566 -14.28476 -14.17006 -13.96483 -13.69668 -13.54232 -13.30569 -13.25868 -13.11682 -13.03162 -12.86457 -12.71866 -12.59170 -12.46994 -12.18414 -12.08547 -11.88877 -11.70659 -11.50218 -11.26660 -10.92647 -10.52339 -10.35652 -9.79641 -9.70968 -9.47992 -8.12646 -6.19425 -0.45055 0.55928 0.60888 1.40929 1.45709 1.53255 1.80998 2.44172 2.50338 2.95680 3.00230 3.23515 3.26412 3.67038 3.87186 3.95175 4.00977 4.17228 4.24313 4.24933 4.26046 4.32504 4.36232 4.45826 4.54905 4.66538 4.69481 4.72088 4.81648 4.90913 4.91341 5.06658 5.12366 5.19366 5.25372 5.43736 5.54720 5.59897 5.65842 5.68959 5.86863 5.92114 6.15642 6.20131 6.22498 6.29728 6.95297 7.48286 8.98620 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.006302 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.702414 B = 4441.784307 C = 6044.949876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.932 3.068 4 H -0.239 1.239 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.512 4.512 8 H 0.081 0.919 9 C 0.037 3.963 10 C 0.212 3.788 11 H 0.084 0.916 12 N -1.102 6.102 13 S 2.801 3.199 14 O -1.007 7.007 15 O -0.994 6.994 16 N -1.007 6.007 17 C 0.088 3.912 18 C 0.036 3.964 19 O -0.387 6.387 20 C 0.035 3.965 21 C 0.091 3.909 22 C -0.104 4.104 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.131 4.131 26 C -0.132 4.132 27 C -0.127 4.127 28 H 0.257 0.743 29 H 0.004 0.996 30 H 0.003 0.997 31 H 0.418 0.582 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.127 0.873 36 H 0.052 0.948 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.139 0.861 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.250 -8.860 -1.871 12.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.189 4.189 3 Si 0.758 3.242 4 H -0.162 1.162 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.550 4.550 8 H 0.099 0.901 9 C -0.001 4.001 10 C 0.105 3.895 11 H 0.102 0.898 12 N -0.862 5.862 13 S 2.810 3.190 14 O -0.991 6.991 15 O -0.977 6.977 16 N -0.849 5.849 17 C -0.037 4.037 18 C -0.042 4.042 19 O -0.306 6.306 20 C -0.043 4.043 21 C -0.035 4.035 22 C -0.106 4.106 23 C -0.147 4.147 24 C -0.141 4.141 25 C -0.149 4.149 26 C -0.150 4.150 27 C -0.146 4.146 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.252 0.748 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.144 0.856 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.149 0.851 41 H 0.165 0.835 42 H 0.165 0.835 43 H 0.157 0.843 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.712 -9.460 -1.630 12.963 hybrid contribution -0.740 1.628 0.504 1.858 sum 7.972 -7.831 -1.127 11.231 Atomic orbital electron populations 1.70104 1.07661 1.27059 1.52347 1.25704 0.95279 1.02330 0.95545 0.85921 0.80941 0.80465 0.76837 1.16224 1.22061 1.21587 1.21641 0.94259 0.90611 1.48477 0.90093 1.19169 0.93363 0.91521 0.96048 1.19637 0.92887 0.91835 0.85182 0.89803 1.55656 1.29662 1.80246 1.20612 1.01244 0.72439 0.73262 0.72095 1.93543 1.79674 1.86042 1.39868 1.93578 1.86996 1.37555 1.79614 1.58040 1.66099 1.41020 1.19713 1.22331 1.04411 0.98287 0.78650 1.23285 0.95347 0.85616 0.99921 1.87867 1.64934 1.51727 1.26037 1.23241 1.02103 0.97219 0.81773 1.22175 0.98168 0.84095 0.99015 1.20566 0.98890 0.96490 0.94691 1.21252 1.00171 0.95509 0.97718 1.21433 0.97511 0.95900 0.99303 1.21462 1.00163 1.00705 0.92598 1.21421 0.99182 0.94733 0.99630 1.21107 0.98424 0.97140 0.97902 0.93373 0.97789 0.97894 0.74771 0.88506 0.88578 0.92540 0.85568 0.92970 0.86269 0.88497 0.88488 0.85118 0.83502 0.83482 0.84316 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.58 13.29 21.45 0.29 -52.30 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.93 40.35 29.43 68.60 2.02 42.37 16 4 H -0.24 -9.28 5.94 99.48 0.59 -8.69 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.51 -24.37 8.66 25.60 0.22 -24.15 16 8 H 0.08 3.52 4.16 -2.91 -0.01 3.51 16 9 C 0.04 1.70 4.56 29.85 0.14 1.84 16 10 C 0.21 7.71 2.35 44.25 0.10 7.82 16 11 H 0.08 2.86 5.87 -2.39 -0.01 2.84 16 12 N -1.10 -37.76 4.48 -172.52 -0.77 -38.53 16 13 S 2.80 92.76 6.06 -56.49 -0.34 92.42 16 14 O -1.01 -37.06 16.81 -128.00 -2.15 -39.21 16 15 O -0.99 -36.37 16.83 -128.00 -2.15 -38.52 16 16 N -1.01 -28.70 3.39 -510.85 -1.73 -30.43 16 17 C 0.09 2.19 5.89 86.50 0.51 2.70 16 18 C 0.04 0.95 7.00 72.22 0.51 1.45 16 19 O -0.39 -11.22 10.74 -148.98 -1.60 -12.82 16 20 C 0.03 0.96 6.98 72.08 0.50 1.47 16 21 C 0.09 2.34 6.59 86.36 0.57 2.91 16 22 C -0.10 -3.66 4.95 -19.87 -0.10 -3.76 16 23 C -0.13 -3.98 9.67 22.27 0.22 -3.76 16 24 C -0.12 -3.25 10.05 22.27 0.22 -3.03 16 25 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 26 C -0.13 -3.73 10.05 22.27 0.22 -3.50 16 27 C -0.13 -4.27 9.32 22.27 0.21 -4.06 16 28 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.42 14.06 8.69 -96.74 -0.84 13.21 16 32 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.10 2.32 6.46 -2.39 -0.02 2.31 16 34 H 0.06 1.78 6.34 -2.39 -0.02 1.76 16 35 H 0.13 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.05 1.75 4.61 -2.38 -0.01 1.74 16 37 H 0.12 2.73 8.14 -2.38 -0.02 2.71 16 38 H 0.10 2.51 7.13 -2.39 -0.02 2.49 16 39 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.13 3.58 8.04 -2.91 -0.02 3.55 16 41 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 43 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 44 H 0.12 3.76 7.62 -2.91 -0.02 3.74 16 Total: -1.00 -67.29 363.02 -2.37 -69.66 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 0.08 Total: 33.60 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 4.01 Total: -26.23 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -2.22 Total: -121.26 kcal Atomic # 8 Polarization: -84.65 SS G_CDS: -5.91 Total: -90.56 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.02 Total: 42.37 kcal Atomic # 16 Polarization: 92.76 SS G_CDS: -0.34 Total: 92.42 kcal Total: -67.29 -2.37 -69.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124552039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.741 kcal (2) G-P(sol) polarization free energy of solvation -67.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds