Wall clock time and date at job start Tue Mar 31 2020 23:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38376 * 119.92730 * 2 1 4 4 C 1.38341 * 120.29424 * 179.97438 * 3 2 1 5 5 S 1.76196 * 119.92657 * 179.97438 * 4 3 2 6 6 N 1.65596 * 107.21910 * 90.00565 * 5 4 3 7 7 O 1.42103 * 106.39901 * 203.53989 * 5 4 3 8 8 O 1.42094 * 106.40507 * 336.46016 * 5 4 3 9 9 C 1.37976 * 120.14011 * 359.74695 * 4 3 2 10 10 C 1.39552 * 119.85376 * 0.48413 * 9 4 3 11 11 C 1.47847 * 120.14405 * 179.79508 * 10 9 4 12 12 O 1.21555 * 120.00517 * 130.38579 * 11 10 9 13 13 N 1.34778 * 119.99861 * 310.39028 * 11 10 9 14 14 C 1.46498 * 120.00251 * 4.61381 * 13 11 10 15 15 C 1.46503 * 120.00053 * 184.61860 * 13 11 10 16 16 H 1.08999 * 109.46990 * 0.02562 * 15 13 11 17 17 C 1.52998 * 109.47204 * 119.99453 * 15 13 11 18 18 C 1.50701 * 109.47059 * 239.99777 * 15 13 11 19 19 H 1.07999 * 119.99844 * 359.97438 * 18 15 13 20 20 C 1.37879 * 119.99792 * 180.02562 * 18 15 13 21 21 N 1.31513 * 120.00072 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 119.99610 * 180.02562 * 20 18 15 23 23 H 1.48490 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47176 * 120.00220 * 22 20 18 25 25 H 1.48507 * 109.46826 * 239.99552 * 22 20 18 26 26 C 1.37929 * 119.92747 * 179.97438 * 2 1 3 27 27 C 1.50705 * 120.07573 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.47420 * 270.02237 * 1 2 3 29 29 H 1.08997 * 109.47154 * 30.02576 * 1 2 3 30 30 H 1.09000 * 109.47115 * 150.02373 * 1 2 3 31 31 H 1.08001 * 119.85382 * 0.02562 * 3 2 1 32 32 H 0.96998 * 120.00371 * 150.00382 * 6 5 4 33 33 H 0.97004 * 119.99888 * 329.99133 * 6 5 4 34 34 H 1.08003 * 120.07027 * 180.25422 * 9 4 3 35 35 H 1.09000 * 109.47266 * 84.93059 * 14 13 11 36 36 H 1.09008 * 109.47191 * 324.93676 * 14 13 11 37 37 H 1.08993 * 109.47543 * 204.93766 * 14 13 11 38 38 H 1.09003 * 109.47306 * 300.00324 * 17 15 13 39 39 H 1.09004 * 109.47025 * 60.00448 * 17 15 13 40 40 H 1.08997 * 109.47411 * 179.97438 * 17 15 13 41 41 H 0.97004 * 119.99751 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.47056 * 266.40398 * 27 26 2 43 43 H 1.09003 * 109.46696 * 26.40018 * 27 26 2 44 44 H 1.09000 * 109.47303 * 146.40229 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 0.0005 5 16 4.4500 2.7407 -0.0002 6 7 4.6914 3.1681 1.5814 7 8 5.7353 2.4728 -0.5439 8 8 3.5612 3.7059 -0.5455 9 6 4.2812 0.0194 0.0063 10 6 3.5911 -1.1936 0.0015 11 6 4.3352 -2.4711 0.0031 12 8 4.0481 -3.3408 0.8023 13 7 5.3320 -2.6715 -0.8817 14 6 5.7457 -1.5882 -1.7769 15 6 6.0018 -3.9728 -0.9483 16 1 5.5612 -4.6462 -0.2131 17 6 5.8291 -4.5642 -2.3487 18 6 7.4695 -3.7979 -0.6542 19 1 7.8639 -2.8157 -0.4397 20 6 8.3088 -4.8918 -0.6602 21 7 7.8285 -6.0877 -0.9219 22 14 10.1279 -4.6750 -0.2950 23 1 10.4130 -3.2414 -0.0338 24 1 10.4921 -5.4783 0.8998 25 1 10.9249 -5.1334 -1.4612 26 6 2.1952 -1.1954 0.0005 27 6 1.4417 -2.5006 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6538 2.1325 0.0004 32 1 5.4702 3.6904 1.8293 33 1 4.0537 2.8963 2.2600 34 1 5.3612 0.0276 0.0109 35 1 6.4667 -0.9500 -1.2660 36 1 4.8742 -0.9976 -2.0596 37 1 6.2038 -2.0106 -2.6711 38 1 4.7675 -4.6906 -2.5614 39 1 6.2694 -3.8909 -3.0843 40 1 6.3278 -5.5321 -2.3984 41 1 8.4192 -6.8572 -0.9265 42 1 1.3155 -2.8472 1.0262 43 1 0.4631 -2.3550 -0.4568 44 1 2.0016 -3.2433 -0.5677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125169032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:43 Heat of formation + Delta-G solvation = -84.620970 kcal Electronic energy + Delta-G solvation = -28352.961926 eV Core-core repulsion = 24397.416909 eV Total energy + Delta-G solvation = -3955.545017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.42177 -38.40571 -37.29979 -35.98519 -35.49201 -33.92060 -33.41894 -32.96290 -32.18739 -29.51905 -27.85262 -27.00634 -26.18131 -25.25006 -23.73073 -21.83722 -20.97430 -19.59698 -18.85051 -17.80496 -17.49637 -16.91685 -16.62498 -16.34464 -15.88959 -15.61750 -15.23730 -15.02116 -14.66696 -14.32002 -14.03432 -13.57547 -13.14987 -12.93399 -12.87878 -12.65704 -12.56165 -12.39580 -12.27986 -12.23345 -12.13793 -12.08478 -11.83719 -11.60619 -11.58083 -11.40612 -11.08632 -10.95187 -10.82180 -10.75507 -10.63743 -10.27137 -10.19705 -9.25301 -9.22441 -9.10749 -8.87984 -8.45606 -7.68000 -6.09683 -4.17427 0.20495 0.59845 0.94521 2.78728 3.08798 3.25957 3.34028 3.37969 3.41278 3.60432 3.81895 4.26013 4.39068 4.56767 4.65284 4.69672 4.92544 4.99128 5.11344 5.22264 5.31147 5.42937 5.53203 5.61453 5.67869 5.72304 5.73577 5.78203 5.81568 5.97378 6.03987 6.13584 6.31982 6.34103 6.60584 6.71768 6.77338 6.78216 6.99744 7.34511 7.44578 7.68149 7.96491 8.14213 8.42314 8.76014 8.93096 9.49195 10.95727 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.003885 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.834990 B = 7204.619297 C = 8867.460561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.116 4.116 3 C -0.010 4.010 4 C -0.687 4.687 5 S 2.703 3.297 6 N -1.249 6.249 7 O -0.957 6.957 8 O -0.964 6.964 9 C 0.010 3.990 10 C -0.130 4.130 11 C 0.545 3.455 12 O -0.540 6.540 13 N -0.582 5.582 14 C 0.078 3.922 15 C 0.257 3.743 16 H 0.065 0.935 17 C -0.148 4.148 18 C -0.525 4.525 19 H 0.061 0.939 20 C 0.065 3.935 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.019 3.981 27 C -0.127 4.127 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.421 0.579 33 H 0.417 0.583 34 H 0.150 0.850 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.011 0.989 39 H 0.032 0.968 40 H 0.096 0.904 41 H 0.263 0.737 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.989 16.191 2.546 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.117 4.117 3 C -0.029 4.029 4 C -0.775 4.775 5 S 2.791 3.209 6 N -0.922 5.922 7 O -0.947 6.947 8 O -0.953 6.953 9 C -0.010 4.010 10 C -0.135 4.135 11 C 0.331 3.669 12 O -0.419 6.419 13 N -0.312 5.312 14 C -0.066 4.066 15 C 0.158 3.842 16 H 0.083 0.917 17 C -0.206 4.206 18 C -0.564 4.564 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.727 3.273 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 C 0.018 3.982 27 C -0.183 4.183 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.160 0.840 32 H 0.251 0.749 33 H 0.244 0.756 34 H 0.167 0.833 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.030 0.970 39 H 0.051 0.949 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.787 15.935 1.972 20.526 hybrid contribution 0.923 -0.381 0.834 1.301 sum -11.864 15.554 2.806 19.763 Atomic orbital electron populations 1.20878 0.90151 1.03422 1.02820 1.19787 0.96656 0.92083 1.03170 1.20868 0.91698 0.98674 0.91703 1.30484 1.05861 1.19276 1.21854 1.01502 0.73585 0.73409 0.72356 1.53133 1.38166 1.72165 1.28786 1.93628 1.39527 1.85146 1.76405 1.93599 1.67053 1.58407 1.76270 1.21198 1.00694 0.90025 0.89108 1.20251 0.93812 0.94564 1.04830 1.18077 0.80783 0.86000 0.82045 1.90752 1.67908 1.44629 1.38590 1.48253 1.33099 1.15400 1.34413 1.21797 0.99185 0.90296 0.95326 1.19028 0.91949 0.78199 0.95073 0.91723 1.22116 0.97160 1.03734 0.97620 1.21350 0.92207 0.94423 1.48402 0.92063 1.24886 0.98990 0.95003 0.94850 1.69884 1.35373 0.98650 1.48739 0.86426 0.84636 0.78327 0.77951 1.19697 1.20924 1.20910 1.20139 0.92185 0.95825 0.90081 1.21063 0.99561 0.93566 1.04083 0.90756 0.91139 0.90626 0.83987 0.74919 0.75617 0.83256 0.92612 0.92909 0.90138 0.96989 0.94938 0.88599 0.92723 0.89289 0.90826 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.60 36.01 0.35 -0.56 16 2 C -0.12 -1.29 5.87 -104.68 -0.61 -1.91 16 3 C -0.01 -0.11 9.17 -39.49 -0.36 -0.47 16 4 C -0.69 -8.13 5.97 -39.64 -0.24 -8.37 16 5 S 2.70 28.90 6.28 -107.50 -0.67 28.22 16 6 N -1.25 -8.38 9.52 60.35 0.57 -7.80 16 7 O -0.96 -13.53 17.28 -57.17 -0.99 -14.52 16 8 O -0.96 -12.35 17.27 -57.17 -0.99 -13.34 16 9 C 0.01 0.14 7.27 -39.19 -0.28 -0.15 16 10 C -0.13 -2.14 4.87 -104.97 -0.51 -2.66 16 11 C 0.55 11.32 6.32 -12.33 -0.08 11.24 16 12 O -0.54 -12.90 15.12 5.32 0.08 -12.82 16 13 N -0.58 -12.53 2.75 -176.38 -0.49 -13.01 16 14 C 0.08 1.40 8.28 59.85 0.50 1.89 16 15 C 0.26 6.51 2.63 -69.08 -0.18 6.33 16 16 H 0.06 1.88 6.91 -51.93 -0.36 1.52 16 17 C -0.15 -3.49 8.96 37.16 0.33 -3.16 16 18 C -0.53 -14.17 8.37 -34.44 -0.29 -14.46 16 19 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -24.89 11.32 55.43 0.63 -24.27 16 22 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 C 0.02 0.26 5.91 -104.23 -0.62 -0.35 16 27 C -0.13 -1.64 8.58 36.01 0.31 -1.33 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.08 0.55 5.90 -51.93 -0.31 0.24 16 31 H 0.14 1.17 7.61 -52.49 -0.40 0.77 16 32 H 0.42 2.15 8.96 -34.47 -0.31 1.84 16 33 H 0.42 1.87 8.96 -34.47 -0.31 1.57 16 34 H 0.15 2.20 5.92 -52.48 -0.31 1.89 16 35 H 0.06 0.97 7.10 -51.93 -0.37 0.60 16 36 H 0.05 0.82 6.29 -51.92 -0.33 0.49 16 37 H 0.08 1.44 6.44 -51.93 -0.33 1.11 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 40 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.07 0.71 5.81 -51.93 -0.30 0.41 16 44 H 0.08 1.21 6.97 -51.93 -0.36 0.85 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -35.46 365.56 -8.72 -44.18 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.57 Total: 4.04 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.78 Total: -12.27 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.72 Total: -45.08 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.90 Total: -40.67 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 28.90 SS G_CDS: -0.67 Total: 28.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.46 -8.72 -44.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125169032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.438 kcal (2) G-P(sol) polarization free energy of solvation -35.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds