Wall clock time and date at job start Tue Mar 31 2020 23:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38376 * 119.92730 * 2 1 4 4 C 1.38341 * 120.29424 * 179.97438 * 3 2 1 5 5 S 1.76196 * 119.92657 * 179.97438 * 4 3 2 6 6 N 1.65596 * 107.21910 * 90.00565 * 5 4 3 7 7 O 1.42103 * 106.39901 * 203.53989 * 5 4 3 8 8 O 1.42094 * 106.40507 * 336.46016 * 5 4 3 9 9 C 1.37976 * 120.14011 * 359.74695 * 4 3 2 10 10 C 1.39552 * 119.85376 * 0.48413 * 9 4 3 11 11 C 1.47847 * 120.14405 * 179.79508 * 10 9 4 12 12 O 1.21555 * 120.00517 * 130.38579 * 11 10 9 13 13 N 1.34778 * 119.99861 * 310.39028 * 11 10 9 14 14 C 1.46498 * 120.00251 * 4.61381 * 13 11 10 15 15 C 1.46503 * 120.00053 * 184.61860 * 13 11 10 16 16 H 1.08999 * 109.46990 * 0.02562 * 15 13 11 17 17 C 1.52998 * 109.47204 * 119.99453 * 15 13 11 18 18 C 1.50701 * 109.47059 * 239.99777 * 15 13 11 19 19 H 1.07999 * 119.99844 * 359.97438 * 18 15 13 20 20 C 1.37879 * 119.99792 * 180.02562 * 18 15 13 21 21 N 1.31513 * 120.00072 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 119.99610 * 180.02562 * 20 18 15 23 23 H 1.48490 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47176 * 120.00220 * 22 20 18 25 25 H 1.48507 * 109.46826 * 239.99552 * 22 20 18 26 26 C 1.37929 * 119.92747 * 179.97438 * 2 1 3 27 27 C 1.50705 * 120.07573 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.47420 * 270.02237 * 1 2 3 29 29 H 1.08997 * 109.47154 * 30.02576 * 1 2 3 30 30 H 1.09000 * 109.47115 * 150.02373 * 1 2 3 31 31 H 1.08001 * 119.85382 * 0.02562 * 3 2 1 32 32 H 0.96998 * 120.00371 * 150.00382 * 6 5 4 33 33 H 0.97004 * 119.99888 * 329.99133 * 6 5 4 34 34 H 1.08003 * 120.07027 * 180.25422 * 9 4 3 35 35 H 1.09000 * 109.47266 * 84.93059 * 14 13 11 36 36 H 1.09008 * 109.47191 * 324.93676 * 14 13 11 37 37 H 1.08993 * 109.47543 * 204.93766 * 14 13 11 38 38 H 1.09003 * 109.47306 * 300.00324 * 17 15 13 39 39 H 1.09004 * 109.47025 * 60.00448 * 17 15 13 40 40 H 1.08997 * 109.47411 * 179.97438 * 17 15 13 41 41 H 0.97004 * 119.99751 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.47056 * 266.40398 * 27 26 2 43 43 H 1.09003 * 109.46696 * 26.40018 * 27 26 2 44 44 H 1.09000 * 109.47303 * 146.40229 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 0.0005 5 16 4.4500 2.7407 -0.0002 6 7 4.6914 3.1681 1.5814 7 8 5.7353 2.4728 -0.5439 8 8 3.5612 3.7059 -0.5455 9 6 4.2812 0.0194 0.0063 10 6 3.5911 -1.1936 0.0015 11 6 4.3352 -2.4711 0.0031 12 8 4.0481 -3.3408 0.8023 13 7 5.3320 -2.6715 -0.8817 14 6 5.7457 -1.5882 -1.7769 15 6 6.0018 -3.9728 -0.9483 16 1 5.5612 -4.6462 -0.2131 17 6 5.8291 -4.5642 -2.3487 18 6 7.4695 -3.7979 -0.6542 19 1 7.8639 -2.8157 -0.4397 20 6 8.3088 -4.8918 -0.6602 21 7 7.8285 -6.0877 -0.9219 22 14 10.1279 -4.6750 -0.2950 23 1 10.4130 -3.2414 -0.0338 24 1 10.4921 -5.4783 0.8998 25 1 10.9249 -5.1334 -1.4612 26 6 2.1952 -1.1954 0.0005 27 6 1.4417 -2.5006 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6538 2.1325 0.0004 32 1 5.4702 3.6904 1.8293 33 1 4.0537 2.8963 2.2600 34 1 5.3612 0.0276 0.0109 35 1 6.4667 -0.9500 -1.2660 36 1 4.8742 -0.9976 -2.0596 37 1 6.2038 -2.0106 -2.6711 38 1 4.7675 -4.6906 -2.5614 39 1 6.2694 -3.8909 -3.0843 40 1 6.3278 -5.5321 -2.3984 41 1 8.4192 -6.8572 -0.9265 42 1 1.3155 -2.8472 1.0262 43 1 0.4631 -2.3550 -0.4568 44 1 2.0016 -3.2433 -0.5677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125169032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:42 Heat of formation + Delta-G solvation = -111.739479 kcal Electronic energy + Delta-G solvation = -28354.137873 eV Core-core repulsion = 24397.416909 eV Total energy + Delta-G solvation = -3956.720964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69164 -39.80558 -38.26911 -37.27849 -36.94974 -35.18286 -34.53701 -34.05164 -33.43827 -31.29255 -28.91736 -28.07182 -27.54386 -27.31824 -25.08402 -22.83622 -22.55470 -20.58620 -20.17036 -18.84997 -18.49087 -18.33788 -18.10943 -17.44471 -17.26973 -17.08464 -16.45119 -16.30040 -15.94081 -15.73021 -15.24759 -14.78683 -14.61282 -14.41997 -14.09056 -13.76655 -13.69685 -13.52591 -13.37026 -13.28226 -13.22759 -13.18955 -13.12435 -13.00532 -12.89050 -12.77199 -12.72677 -12.58745 -12.57218 -12.22240 -12.14671 -11.83033 -11.33103 -11.21830 -10.83139 -10.54974 -10.25404 -9.87165 -9.45365 -8.17756 -6.33967 -0.67441 -0.40117 -0.10948 1.39277 1.40841 1.52368 1.58949 2.08041 2.20723 2.31572 2.44538 2.72254 3.10367 3.25630 3.53527 3.61560 3.69628 3.92404 4.11969 4.18664 4.28670 4.46489 4.54467 4.56750 4.59277 4.68167 4.72672 4.78502 4.83315 4.86925 4.91940 4.99497 5.01629 5.09169 5.23335 5.26981 5.36093 5.41726 5.54585 5.61898 5.68628 5.96420 6.11411 6.34848 6.66383 6.72361 7.17854 7.39059 8.86912 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.003885 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.834990 B = 7204.619297 C = 8867.460561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.105 4.105 3 C 0.000 4.000 4 C -0.681 4.681 5 S 2.731 3.269 6 N -1.233 6.233 7 O -0.993 6.993 8 O -0.979 6.979 9 C -0.001 4.001 10 C -0.155 4.155 11 C 0.541 3.459 12 O -0.584 6.584 13 N -0.591 5.591 14 C 0.078 3.922 15 C 0.262 3.738 16 H 0.016 0.984 17 C -0.133 4.133 18 C -0.540 4.540 19 H 0.058 0.942 20 C 0.019 3.981 21 N -0.915 5.915 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.006 3.994 27 C -0.123 4.123 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.177 0.823 32 H 0.431 0.569 33 H 0.430 0.570 34 H 0.140 0.860 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.022 0.978 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.265 0.735 42 H 0.082 0.918 43 H 0.110 0.890 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.299 19.236 2.557 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.106 4.106 3 C -0.019 4.019 4 C -0.767 4.767 5 S 2.818 3.182 6 N -0.912 5.912 7 O -0.983 6.983 8 O -0.969 6.969 9 C -0.021 4.021 10 C -0.159 4.159 11 C 0.330 3.670 12 O -0.467 6.467 13 N -0.320 5.320 14 C -0.064 4.064 15 C 0.160 3.840 16 H 0.034 0.966 17 C -0.192 4.192 18 C -0.579 4.579 19 H 0.076 0.924 20 C -0.181 4.181 21 N -0.554 5.554 22 Si 0.789 3.211 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.199 1.199 26 C 0.005 3.995 27 C -0.179 4.179 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.194 0.806 32 H 0.264 0.736 33 H 0.260 0.740 34 H 0.158 0.842 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.108 19.005 1.975 23.752 hybrid contribution 1.234 -1.258 0.892 1.975 sum -12.874 17.747 2.867 22.112 Atomic orbital electron populations 1.21019 0.87175 1.04861 1.04330 1.20166 0.98622 0.90837 1.01020 1.21359 0.91216 0.99955 0.89332 1.30612 1.06621 1.18529 1.20955 1.00579 0.72349 0.72490 0.72807 1.52745 1.39022 1.71831 1.27642 1.93586 1.41277 1.85472 1.77918 1.93585 1.67369 1.58543 1.77358 1.21075 1.00423 0.90323 0.90238 1.19913 0.94744 0.92667 1.08535 1.18771 0.80247 0.87230 0.80767 1.90705 1.68996 1.46759 1.40194 1.48212 1.33394 1.14941 1.35447 1.21934 1.00420 0.89485 0.94557 1.18634 0.91289 0.79564 0.94469 0.96626 1.21901 0.97638 1.02601 0.97058 1.21576 0.93158 0.94416 1.48742 0.92395 1.25690 1.03234 0.94661 0.94551 1.70011 1.36849 0.99317 1.49204 0.85422 0.79487 0.78340 0.77878 1.19190 1.20878 1.19850 1.20313 0.91220 0.97314 0.90642 1.21040 1.00799 0.92539 1.03509 0.89050 0.88891 0.90047 0.80550 0.73631 0.73989 0.84206 0.92231 0.90334 0.90200 0.95925 0.93480 0.90942 0.92529 0.89909 0.87192 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.60 71.24 0.68 -0.62 16 2 C -0.11 -2.02 5.87 -19.90 -0.12 -2.13 16 3 C 0.00 0.01 9.17 22.33 0.20 0.21 16 4 C -0.68 -14.57 5.97 22.23 0.13 -14.44 16 5 S 2.73 52.12 6.28 -56.49 -0.35 51.77 16 6 N -1.23 -13.22 9.52 37.02 0.35 -12.86 16 7 O -0.99 -26.83 17.28 -128.00 -2.21 -29.05 16 8 O -0.98 -22.09 17.27 -128.00 -2.21 -24.30 16 9 C 0.00 -0.02 7.27 22.52 0.16 0.14 16 10 C -0.15 -5.14 4.87 -20.09 -0.10 -5.24 16 11 C 0.54 23.66 6.32 86.79 0.55 24.21 16 12 O -0.58 -29.96 15.12 -3.89 -0.06 -30.02 16 13 N -0.59 -26.55 2.75 -830.21 -2.29 -28.83 16 14 C 0.08 2.86 8.28 127.77 1.06 3.92 16 15 C 0.26 13.95 2.63 44.24 0.12 14.07 16 16 H 0.02 0.99 6.91 -2.39 -0.02 0.97 16 17 C -0.13 -6.54 8.96 71.98 0.64 -5.90 16 18 C -0.54 -30.12 8.37 25.60 0.21 -29.90 16 19 H 0.06 3.19 7.65 -2.91 -0.02 3.16 16 20 C 0.02 1.02 5.30 84.66 0.45 1.47 16 21 N -0.92 -52.87 11.32 21.45 0.24 -52.63 16 22 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 C 0.01 0.17 5.91 -19.61 -0.12 0.05 16 27 C -0.12 -3.18 8.58 71.24 0.61 -2.57 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.67 8.08 -2.39 -0.02 0.65 16 30 H 0.08 0.84 5.90 -2.39 -0.01 0.82 16 31 H 0.18 1.95 7.61 -2.91 -0.02 1.92 16 32 H 0.43 3.30 8.96 -96.75 -0.87 2.43 16 33 H 0.43 2.50 8.96 -96.74 -0.87 1.64 16 34 H 0.14 4.17 5.92 -2.91 -0.02 4.15 16 35 H 0.06 2.10 7.10 -2.39 -0.02 2.09 16 36 H 0.08 2.43 6.29 -2.38 -0.01 2.41 16 37 H 0.08 2.88 6.44 -2.39 -0.02 2.86 16 38 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 2.11 6.66 -2.38 -0.02 2.09 16 40 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 41 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.11 1.92 5.81 -2.39 -0.01 1.91 16 44 H 0.04 1.45 6.97 -2.39 -0.02 1.43 16 Total: -1.00 -80.50 365.56 -0.67 -81.17 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -0.66 Total: 15.64 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 4.50 Total: -16.72 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -1.69 Total: -94.33 kcal Atomic # 8 Polarization: -78.88 SS G_CDS: -4.48 Total: -83.36 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 52.12 SS G_CDS: -0.35 Total: 51.77 kcal Total: -80.50 -0.67 -81.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125169032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.568 kcal (2) G-P(sol) polarization free energy of solvation -80.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds