Wall clock time and date at job start Tue Mar 31 2020 23:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86794 * 120.00249 * 2 1 4 4 H 1.48510 * 109.46853 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47169 * 299.99917 * 3 2 1 6 6 H 1.48493 * 109.47272 * 60.00399 * 3 2 1 7 7 C 1.38991 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.37323 * 119.99770 * 359.97438 * 7 2 1 10 10 C 1.36496 * 126.06612 * 179.97438 * 9 7 2 11 11 C 1.35681 * 107.50674 * 179.97438 * 10 9 7 12 12 N 1.40589 * 126.08245 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00470 * 180.02562 * 12 11 10 14 14 O 1.21296 * 119.99540 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00036 * 179.97438 * 13 12 11 16 16 H 1.09008 * 110.88602 * 56.19161 * 15 13 12 17 17 C 1.54623 * 110.97244 * 292.37774 * 15 13 12 18 18 C 1.51282 * 104.19311 * 266.68304 * 17 15 13 19 19 O 1.21293 * 124.94506 * 163.77094 * 18 17 15 20 20 N 1.34419 * 110.11710 * 343.74372 * 18 17 15 21 21 C 1.39930 * 124.35282 * 179.86176 * 20 18 17 22 22 C 1.38876 * 120.06579 * 353.62741 * 21 20 18 23 23 C 1.38117 * 119.92704 * 179.76640 * 22 21 20 24 24 C 1.38282 * 120.06917 * 0.48693 * 23 22 21 25 25 C 1.38281 * 120.14019 * 359.76853 * 24 23 22 26 26 C 1.38113 * 120.07516 * 0.02562 * 25 24 23 27 27 C 1.46766 * 111.30186 * 359.59590 * 20 18 17 28 28 C 1.40646 * 107.83685 * 0.26252 * 11 10 9 29 29 N 1.30911 * 108.38993 * 359.55788 * 28 11 10 30 30 H 0.97010 * 119.99685 * 359.97438 * 1 2 3 31 31 H 1.07994 * 126.24568 * 359.96599 * 10 9 7 32 32 H 0.97009 * 120.00007 * 359.97438 * 12 11 10 33 33 H 1.08998 * 110.48399 * 25.35191 * 17 15 13 34 34 H 1.08995 * 110.48869 * 148.00498 * 17 15 13 35 35 H 1.08006 * 120.03719 * 359.97438 * 22 21 20 36 36 H 1.07998 * 119.96446 * 180.21043 * 23 22 21 37 37 H 1.07992 * 119.93065 * 179.74338 * 24 23 22 38 38 H 1.08004 * 119.96187 * 179.97438 * 25 24 23 39 39 H 1.07998 * 120.03828 * 180.02562 * 26 25 24 40 40 H 1.08997 * 110.24776 * 136.01127 * 27 20 18 41 41 H 1.08996 * 110.24243 * 257.92847 * 27 20 18 42 42 H 1.08003 * 125.80765 * 179.73500 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6176 0.0000 4 1 3.7071 1.3461 -0.0006 5 1 1.8883 2.3964 -1.2125 6 1 1.8884 2.3963 1.2125 7 6 2.0078 -1.2038 0.0005 8 1 3.0877 -1.2039 0.0001 9 7 1.3211 -2.3929 0.0016 10 6 1.8747 -3.6406 0.0017 11 6 0.8574 -4.5385 0.0035 12 7 0.9885 -5.9382 0.0047 13 6 -0.1107 -6.7181 0.0059 14 8 -1.2131 -6.2123 0.0064 15 6 0.0300 -8.2185 0.0067 16 1 0.6311 -8.5521 0.8527 17 6 0.6280 -8.7190 -1.3285 18 6 -0.5811 -9.0457 -2.1771 19 8 -0.5640 -9.2023 -3.3798 20 7 -1.6771 -9.1377 -1.4044 21 6 -2.9596 -9.4258 -1.8841 22 6 -3.1888 -9.5077 -3.2514 23 6 -4.4548 -9.7969 -3.7217 24 6 -5.4956 -9.9950 -2.8330 25 6 -5.2717 -9.9089 -1.4712 26 6 -4.0071 -9.6241 -0.9943 27 6 -1.3547 -8.9035 0.0082 28 6 -0.3515 -3.8198 -0.0017 29 7 -0.0718 -2.5409 0.0032 30 1 -0.4850 0.8402 0.0004 31 1 2.9297 -3.8710 0.0005 32 1 1.8702 -6.3428 0.0040 33 1 1.2227 -7.9352 -1.7977 34 1 1.2319 -9.6115 -1.1653 35 1 -2.3773 -9.3486 -3.9461 36 1 -4.6330 -9.8641 -4.7848 37 1 -6.4855 -10.2169 -3.2033 38 1 -6.0868 -10.0637 -0.7797 39 1 -3.8328 -9.5575 0.0694 40 1 -2.0989 -8.2487 0.4614 41 1 -1.3081 -9.8502 0.5464 42 1 -1.3423 -4.2498 -0.0058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139552280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:51 Heat of formation + Delta-G solvation = 30.600564 kcal Electronic energy + Delta-G solvation = -28346.309446 eV Core-core repulsion = 24292.609610 eV Total energy + Delta-G solvation = -4053.699837 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.45031 -41.57687 -40.23492 -39.40933 -37.53033 -35.93221 -35.04977 -34.18241 -32.23211 -31.89162 -30.40402 -29.41556 -28.83992 -26.93070 -25.05774 -24.06423 -23.13634 -22.75228 -21.45212 -21.03080 -20.85810 -19.37853 -18.80566 -18.46420 -17.45100 -17.42192 -16.97937 -16.75819 -16.51870 -16.08655 -15.86861 -15.66308 -15.16065 -15.11247 -14.95038 -14.82880 -14.59065 -14.50357 -14.30519 -13.68754 -13.48775 -13.41960 -13.29348 -13.00469 -12.93241 -12.83395 -12.61363 -12.50401 -12.09895 -12.03366 -11.84802 -11.25688 -11.02748 -10.83138 -10.77947 -10.63828 -10.10504 -9.92557 -8.93752 -8.52196 -8.47307 -6.24426 0.25495 0.42444 1.20277 1.39526 1.45794 1.50533 1.58473 1.79479 1.86031 2.03674 2.26923 2.50911 2.88787 2.90043 3.08961 3.11529 3.25448 3.67665 3.85398 3.97073 4.05819 4.29256 4.33199 4.43982 4.45631 4.50414 4.52826 4.58246 4.61765 4.68668 4.75074 4.81977 5.00581 5.09059 5.09331 5.21891 5.30215 5.43172 5.48271 5.56259 5.60235 5.96411 6.03497 6.09840 6.31849 6.74114 6.75976 6.89890 7.40054 7.48106 7.69119 8.52230 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018504 B = 0.002388 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.836462 B =11720.789302 C =12343.140970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.009 4.009 3 Si 1.019 2.981 4 H -0.239 1.239 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.353 4.353 8 H 0.142 0.858 9 N -0.170 5.170 10 C -0.079 4.079 11 C -0.043 4.043 12 N -0.610 5.610 13 C 0.496 3.504 14 O -0.574 6.574 15 C -0.099 4.099 16 H 0.189 0.811 17 C -0.131 4.131 18 C 0.498 3.502 19 O -0.556 6.556 20 N -0.557 5.557 21 C 0.146 3.854 22 C -0.189 4.189 23 C -0.102 4.102 24 C -0.150 4.150 25 C -0.094 4.094 26 C -0.161 4.161 27 C 0.104 3.896 28 C -0.062 4.062 29 N -0.313 5.313 30 H 0.275 0.725 31 H 0.191 0.809 32 H 0.423 0.577 33 H 0.110 0.890 34 H 0.170 0.830 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.145 0.855 40 H 0.087 0.913 41 H 0.136 0.864 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.596 -22.188 2.138 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.162 1.162 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.159 0.841 9 N 0.061 4.939 10 C -0.229 4.229 11 C -0.149 4.149 12 N -0.255 5.255 13 C 0.284 3.716 14 O -0.454 6.454 15 C -0.120 4.120 16 H 0.206 0.794 17 C -0.171 4.171 18 C 0.289 3.711 19 O -0.435 6.435 20 N -0.280 5.280 21 C 0.052 3.948 22 C -0.210 4.210 23 C -0.121 4.121 24 C -0.168 4.168 25 C -0.112 4.112 26 C -0.181 4.181 27 C -0.017 4.017 28 C -0.237 4.237 29 N -0.145 5.145 30 H 0.085 0.915 31 H 0.207 0.793 32 H 0.261 0.739 33 H 0.128 0.872 34 H 0.188 0.812 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.173 0.827 39 H 0.162 0.838 40 H 0.106 0.894 41 H 0.153 0.847 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.797 -20.604 1.538 20.676 hybrid contribution 0.538 0.172 -0.366 0.673 sum -0.258 -20.432 1.173 20.467 Atomic orbital electron populations 1.70417 1.08461 1.28932 1.37633 1.26890 0.96466 1.04409 0.94222 0.84540 0.79137 0.74444 0.78110 1.16165 1.20032 1.19759 1.20650 0.92950 0.80876 1.53885 0.84056 1.44854 1.03564 1.04935 1.40542 1.22055 0.98948 0.84127 1.17793 1.17304 0.92458 0.84071 1.21069 1.42387 1.10009 1.02062 1.71085 1.21107 0.83622 0.90360 0.76548 1.90631 1.27787 1.75946 1.50988 1.22376 0.98785 0.88503 1.02370 0.79368 1.22492 0.95219 1.06642 0.92714 1.21887 0.86852 0.75001 0.87331 1.90606 1.86119 1.51487 1.15335 1.45963 1.05869 1.65510 1.10616 1.18090 0.84542 0.98848 0.93336 1.21625 0.99660 1.05078 0.94590 1.21294 0.91865 0.97910 1.01011 1.21472 0.99869 1.02047 0.93457 1.21365 0.96439 0.97171 0.96236 1.21096 0.92442 1.04728 0.99819 1.22481 0.96533 1.02861 0.79787 1.24134 0.99063 0.91033 1.09477 1.78158 0.92187 1.16730 1.27460 0.91521 0.79256 0.73868 0.87188 0.81214 0.85505 0.84432 0.83309 0.82669 0.83755 0.89431 0.84663 0.81967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.14 11.81 21.66 0.26 -47.88 16 2 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 3 Si 1.02 38.68 29.55 68.60 2.03 40.71 16 4 H -0.24 -8.04 7.11 99.48 0.71 -7.34 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 7 C -0.35 -18.55 10.25 84.01 0.86 -17.69 16 8 H 0.14 6.41 7.83 -2.92 -0.02 6.38 16 9 N -0.17 -9.35 3.74 -190.02 -0.71 -10.06 16 10 C -0.08 -3.52 11.49 83.37 0.96 -2.56 16 11 C -0.04 -1.87 6.90 37.73 0.26 -1.61 16 12 N -0.61 -18.14 5.39 -303.94 -1.64 -19.78 16 13 C 0.50 14.36 7.05 87.66 0.62 14.98 16 14 O -0.57 -23.15 12.68 -3.08 -0.04 -23.19 16 15 C -0.10 -1.45 3.54 -10.48 -0.04 -1.49 16 16 H 0.19 0.65 8.14 -2.38 -0.02 0.63 16 17 C -0.13 -1.95 6.40 30.59 0.20 -1.75 16 18 C 0.50 13.24 7.92 87.90 0.70 13.93 16 19 O -0.56 -19.30 14.82 -3.07 -0.05 -19.34 16 20 N -0.56 -13.81 3.14 -627.67 -1.97 -15.78 16 21 C 0.15 3.99 6.60 38.15 0.25 4.25 16 22 C -0.19 -5.62 9.28 22.39 0.21 -5.41 16 23 C -0.10 -2.43 10.04 22.25 0.22 -2.21 16 24 C -0.15 -2.90 10.04 22.29 0.22 -2.67 16 25 C -0.09 -1.75 10.04 22.25 0.22 -1.53 16 26 C -0.16 -3.51 9.41 22.39 0.21 -3.30 16 27 C 0.10 1.75 5.59 86.83 0.49 2.24 16 28 C -0.06 -3.34 10.85 85.42 0.93 -2.42 16 29 N -0.31 -18.96 10.40 -56.46 -0.59 -19.54 16 30 H 0.28 14.74 8.31 -92.70 -0.77 13.97 16 31 H 0.19 6.47 8.06 -2.91 -0.02 6.45 16 32 H 0.42 8.09 8.83 -92.70 -0.82 7.27 16 33 H 0.11 1.81 7.84 -2.39 -0.02 1.79 16 34 H 0.17 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.13 4.37 5.27 -2.91 -0.02 4.36 16 36 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 37 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.14 2.47 7.02 -2.91 -0.02 2.45 16 40 H 0.09 1.89 6.59 -2.39 -0.02 1.87 16 41 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.16 8.98 5.92 -2.91 -0.02 8.96 16 Total: -1.00 -90.37 358.02 4.34 -86.03 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.27 Total: 36.08 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 6.77 Total: -7.24 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -4.65 Total: -113.05 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.08 Total: -42.53 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -90.37 4.34 -86.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139552280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.632 kcal (2) G-P(sol) polarization free energy of solvation -90.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds