Wall clock time and date at job start Tue Mar 31 2020 23:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86800 * 120.00314 * 2 1 4 4 H 1.48496 * 109.47220 * 265.00208 * 3 2 1 5 5 H 1.48501 * 109.47123 * 144.99654 * 3 2 1 6 6 H 1.48500 * 109.46698 * 24.99797 * 3 2 1 7 7 C 1.38992 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00123 * 185.10518 * 7 2 1 9 9 N 1.37322 * 119.99704 * 5.11055 * 7 2 1 10 10 C 1.36494 * 126.06742 * 185.10078 * 9 7 2 11 11 C 1.35679 * 107.50795 * 179.97438 * 10 9 7 12 12 N 1.40597 * 126.08059 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00029 * 180.02562 * 12 11 10 14 14 O 1.21305 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00148 * 179.97438 * 13 12 11 16 16 H 1.08994 * 110.85452 * 300.70166 * 15 13 12 17 17 C 1.54629 * 110.96558 * 64.49026 * 15 13 12 18 18 C 1.51375 * 104.14907 * 93.33715 * 17 15 13 19 19 O 1.21293 * 124.93374 * 196.22120 * 18 17 15 20 20 N 1.34420 * 110.12440 * 16.25003 * 18 17 15 21 21 C 1.39929 * 124.34814 * 180.42334 * 20 18 17 22 22 C 1.38874 * 120.07008 * 353.97080 * 21 20 18 23 23 C 1.38115 * 119.92573 * 179.72232 * 22 21 20 24 24 C 1.38281 * 120.07082 * 0.56685 * 23 22 21 25 25 C 1.38287 * 120.14152 * 359.67842 * 24 23 22 26 26 C 1.38112 * 120.06822 * 0.04774 * 25 24 23 27 27 C 1.46761 * 111.30055 * 0.40782 * 20 18 17 28 28 C 1.40650 * 107.83656 * 0.02562 * 11 10 9 29 29 N 1.30905 * 108.38634 * 359.71684 * 28 11 10 30 30 H 0.97001 * 120.00302 * 0.02562 * 1 2 3 31 31 H 1.08005 * 126.24363 * 359.96635 * 10 9 7 32 32 H 0.96998 * 120.00227 * 359.97438 * 12 11 10 33 33 H 1.09007 * 110.48461 * 211.99961 * 17 15 13 34 34 H 1.08991 * 110.48951 * 334.63662 * 17 15 13 35 35 H 1.07998 * 120.03648 * 359.96775 * 22 21 20 36 36 H 1.08004 * 119.96618 * 180.29237 * 23 22 21 37 37 H 1.08005 * 119.93080 * 179.70680 * 24 23 22 38 38 H 1.07999 * 119.96445 * 180.02562 * 25 24 23 39 39 H 1.07998 * 120.03219 * 179.97438 * 26 25 24 40 40 H 1.09003 * 110.24176 * 223.98068 * 27 20 18 41 41 H 1.08998 * 110.31959 * 102.02327 * 27 20 18 42 42 H 1.08000 * 125.80050 * 180.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.6002 1.9854 -1.3947 5 1 3.4877 1.4729 0.8031 6 1 1.3956 2.6808 0.5917 7 6 2.0078 -1.2037 -0.0005 8 1 3.0846 -1.2057 0.0827 9 7 1.3252 -2.3905 -0.1070 10 6 1.8680 -3.6401 -0.0229 11 6 0.8598 -4.5344 -0.1794 12 7 0.9847 -5.9347 -0.1606 13 6 -0.1041 -6.7107 -0.3300 14 8 -1.1920 -6.2010 -0.4982 15 6 0.0299 -8.2116 -0.3105 16 1 0.7103 -8.5507 -1.0915 17 6 0.4915 -8.7079 1.0794 18 6 -0.7980 -9.0266 1.8055 19 8 -0.9007 -9.1778 3.0046 20 7 -1.8123 -9.1182 0.9282 21 6 -3.1382 -9.3939 1.2803 22 6 -3.4568 -9.7168 2.5929 23 6 -4.7674 -9.9827 2.9384 24 6 -5.7599 -9.9392 1.9765 25 6 -5.4451 -9.6230 0.6676 26 6 -4.1374 -9.3505 0.3169 27 6 -1.3505 -8.8917 -0.4463 28 6 -0.3324 -3.8115 -0.3648 29 7 -0.0524 -2.5337 -0.3155 30 1 -0.4850 0.8400 -0.0004 31 1 2.9100 -3.8741 0.1386 32 1 1.8546 -6.3423 -0.0265 33 1 1.1051 -9.6034 0.9802 34 1 1.0404 -7.9242 1.6013 35 1 -2.6813 -9.7560 3.3435 36 1 -5.0166 -10.2292 3.9599 37 1 -6.7833 -10.1522 2.2482 38 1 -6.2227 -9.5895 -0.0812 39 1 -3.8921 -9.1041 -0.7056 40 1 -2.0436 -8.2364 -0.9738 41 1 -1.2533 -9.8404 -0.9741 42 1 -1.3129 -4.2382 -0.5167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139552413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:55 Heat of formation + Delta-G solvation = 30.723762 kcal Electronic energy + Delta-G solvation = -28361.396435 eV Core-core repulsion = 24307.701940 eV Total energy + Delta-G solvation = -4053.694495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.45329 -41.57924 -40.23614 -39.41180 -37.53204 -35.93601 -35.05815 -34.18073 -32.23394 -31.89524 -30.40793 -29.41647 -28.83553 -26.92860 -25.05767 -24.06304 -23.14721 -22.75780 -21.46635 -21.02719 -20.85624 -19.36858 -18.81634 -18.45989 -17.44260 -17.41578 -16.99237 -16.77372 -16.52009 -16.08061 -15.86844 -15.68967 -15.18465 -15.14218 -14.92267 -14.83488 -14.59125 -14.48027 -14.31137 -13.68494 -13.48057 -13.42759 -13.29614 -12.99216 -12.92004 -12.81321 -12.63050 -12.49560 -12.10304 -12.10087 -11.82445 -11.26822 -11.01643 -10.83798 -10.77237 -10.64245 -10.10078 -9.92867 -8.93918 -8.52830 -8.48073 -6.24408 0.25137 0.42153 1.20954 1.39304 1.45728 1.50784 1.56760 1.79164 1.85746 2.04095 2.26819 2.50897 2.87982 2.89772 3.08699 3.12091 3.23426 3.67491 3.85065 3.97001 4.05602 4.28356 4.33444 4.43801 4.46482 4.49552 4.51433 4.60136 4.61739 4.68199 4.74302 4.82059 5.00514 5.09008 5.09196 5.21636 5.29985 5.43274 5.47949 5.55651 5.60008 5.96282 6.03406 6.09510 6.31801 6.73776 6.75488 6.89602 7.39582 7.47817 7.68680 8.51825 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.002404 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.316867 B =11642.187547 C =12278.318090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.007 4.007 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.243 1.243 6 H -0.279 1.279 7 C -0.355 4.355 8 H 0.142 0.858 9 N -0.169 5.169 10 C -0.078 4.078 11 C -0.043 4.043 12 N -0.611 5.611 13 C 0.496 3.504 14 O -0.574 6.574 15 C -0.099 4.099 16 H 0.189 0.811 17 C -0.132 4.132 18 C 0.498 3.502 19 O -0.556 6.556 20 N -0.558 5.558 21 C 0.145 3.855 22 C -0.187 4.187 23 C -0.101 4.101 24 C -0.149 4.149 25 C -0.095 4.095 26 C -0.162 4.162 27 C 0.104 3.896 28 C -0.060 4.060 29 N -0.315 5.315 30 H 0.276 0.724 31 H 0.190 0.810 32 H 0.423 0.577 33 H 0.170 0.830 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.140 0.860 40 H 0.089 0.911 41 H 0.135 0.865 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.706 -22.049 -2.165 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.167 1.167 6 H -0.204 1.204 7 C -0.486 4.486 8 H 0.159 0.841 9 N 0.062 4.938 10 C -0.229 4.229 11 C -0.150 4.150 12 N -0.256 5.256 13 C 0.284 3.716 14 O -0.453 6.453 15 C -0.120 4.120 16 H 0.206 0.794 17 C -0.171 4.171 18 C 0.289 3.711 19 O -0.435 6.435 20 N -0.280 5.280 21 C 0.052 3.948 22 C -0.207 4.207 23 C -0.120 4.120 24 C -0.168 4.168 25 C -0.113 4.113 26 C -0.183 4.183 27 C -0.018 4.018 28 C -0.235 4.235 29 N -0.147 5.147 30 H 0.085 0.915 31 H 0.207 0.793 32 H 0.261 0.739 33 H 0.188 0.812 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.158 0.842 40 H 0.107 0.893 41 H 0.152 0.848 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.733 -20.457 -1.734 20.543 hybrid contribution 0.508 0.135 0.375 0.646 sum -0.225 -20.321 -1.359 20.368 Atomic orbital electron populations 1.70379 1.08511 1.29106 1.37552 1.26880 0.96418 1.04412 0.94108 0.84618 0.78163 0.74021 0.79471 1.18814 1.16655 1.20406 1.20589 0.93280 0.81080 1.53639 0.84096 1.44827 1.04401 1.04904 1.39689 1.22063 0.99470 0.84150 1.17195 1.17306 0.93140 0.84054 1.20466 1.42385 1.11430 1.02089 1.69667 1.21102 0.83404 0.90384 0.76723 1.90627 1.28372 1.75745 1.50561 1.22375 0.99705 0.88557 1.01404 0.79378 1.22524 0.94472 1.06772 0.93352 1.21907 0.87976 0.74956 0.86223 1.90604 1.85731 1.51482 1.15653 1.45960 1.05881 1.65757 1.10391 1.18085 0.83516 0.98729 0.94516 1.21640 0.99030 1.04370 0.95680 1.21311 0.91761 0.98174 1.00729 1.21476 1.00370 1.01846 0.93114 1.21351 0.95682 0.96982 0.97289 1.21086 0.92770 1.04967 0.99458 1.22480 0.95049 1.02974 0.81253 1.24129 0.99305 0.90954 1.09154 1.78113 0.92987 1.16927 1.26659 0.91466 0.79283 0.73903 0.81211 0.87120 0.85111 0.84209 0.83290 0.82902 0.84234 0.89303 0.84775 0.81873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.25 11.86 21.66 0.26 -47.99 16 2 C -0.01 -0.35 5.49 84.95 0.47 0.11 16 3 Si 1.02 38.69 29.55 68.60 2.03 40.72 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.24 -8.33 7.11 99.48 0.71 -7.62 16 6 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.35 -18.71 10.24 84.01 0.86 -17.85 16 8 H 0.14 6.39 7.84 -2.91 -0.02 6.36 16 9 N -0.17 -9.32 3.74 -190.01 -0.71 -10.03 16 10 C -0.08 -3.51 11.49 83.37 0.96 -2.55 16 11 C -0.04 -1.90 6.90 37.73 0.26 -1.64 16 12 N -0.61 -18.20 5.28 -303.92 -1.60 -19.81 16 13 C 0.50 14.35 7.09 87.66 0.62 14.97 16 14 O -0.57 -22.97 12.67 -3.11 -0.04 -23.00 16 15 C -0.10 -1.46 3.54 -10.48 -0.04 -1.50 16 16 H 0.19 0.69 8.14 -2.39 -0.02 0.67 16 17 C -0.13 -1.94 6.40 30.62 0.20 -1.75 16 18 C 0.50 13.17 7.92 87.93 0.70 13.87 16 19 O -0.56 -19.14 14.82 -3.07 -0.05 -19.18 16 20 N -0.56 -13.82 3.14 -627.58 -1.97 -15.79 16 21 C 0.15 3.99 6.60 38.15 0.25 4.24 16 22 C -0.19 -5.40 9.29 22.39 0.21 -5.19 16 23 C -0.10 -2.34 10.04 22.25 0.22 -2.12 16 24 C -0.15 -2.89 10.04 22.29 0.22 -2.67 16 25 C -0.09 -1.84 10.04 22.25 0.22 -1.62 16 26 C -0.16 -3.72 9.42 22.39 0.21 -3.51 16 27 C 0.10 1.75 5.86 86.83 0.51 2.26 16 28 C -0.06 -3.24 10.85 85.42 0.93 -2.32 16 29 N -0.31 -19.03 10.44 -56.47 -0.59 -19.62 16 30 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.19 6.49 8.06 -2.91 -0.02 6.47 16 32 H 0.42 8.16 8.83 -92.71 -0.82 7.34 16 33 H 0.17 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.11 1.80 7.75 -2.39 -0.02 1.78 16 35 H 0.13 4.31 5.26 -2.91 -0.02 4.30 16 36 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.14 2.70 6.75 -2.91 -0.02 2.68 16 40 H 0.09 1.91 6.07 -2.39 -0.01 1.90 16 41 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.16 8.98 5.92 -2.91 -0.02 8.97 16 Total: -1.00 -89.73 357.40 4.40 -85.33 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: 0.27 Total: 36.62 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 6.80 Total: -7.24 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -4.62 Total: -113.24 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.08 Total: -42.19 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -89.73 4.40 -85.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139552413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.055 kcal (2) G-P(sol) polarization free energy of solvation -89.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds