Wall clock time and date at job start Tue Mar 31 2020 23:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86806 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47265 * 240.00022 * 3 2 1 5 5 H 1.48500 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47175 * 119.99947 * 3 2 1 7 7 C 1.38984 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00148 * 180.02562 * 7 2 1 9 9 N 1.37316 * 119.99699 * 359.97438 * 7 2 1 10 10 C 1.36504 * 126.06652 * 180.02562 * 9 7 2 11 11 C 1.35694 * 107.50621 * 180.02562 * 10 9 7 12 12 N 1.40528 * 126.08510 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00324 * 179.97438 * 12 11 10 14 14 O 1.21617 * 119.99467 * 0.02562 * 13 12 11 15 15 C 1.47579 * 120.00323 * 179.97438 * 13 12 11 16 16 C 1.39759 * 120.07314 * 180.02562 * 15 13 12 17 17 C 1.37664 * 119.92134 * 180.29910 * 16 15 13 18 18 C 1.39135 * 120.07511 * 359.44506 * 17 16 15 19 19 N 1.39453 * 119.92672 * 180.25388 * 18 17 16 20 20 C 1.46763 * 124.35262 * 174.49241 * 19 18 17 21 21 C 1.54474 * 105.47520 * 197.02378 * 20 19 18 22 22 C 1.54636 * 101.76391 * 334.58120 * 21 20 19 23 23 C 1.34424 * 124.34928 * 354.20182 * 19 18 17 24 24 O 1.21284 * 124.93688 * 359.56415 * 23 19 18 25 25 C 1.39136 * 120.14963 * 0.55235 * 18 17 16 26 26 C 1.37665 * 120.07093 * 359.72749 * 25 18 17 27 27 C 1.40670 * 107.82941 * 0.25385 * 11 10 9 28 28 N 1.30903 * 108.38564 * 359.56024 * 27 11 10 29 29 H 0.97001 * 120.00070 * 0.02562 * 1 2 3 30 30 H 1.07999 * 126.24494 * 0.02562 * 10 9 7 31 31 H 0.97004 * 120.00002 * 359.97438 * 12 11 10 32 32 H 1.08003 * 120.03452 * 0.02562 * 16 15 13 33 33 H 1.08004 * 119.96203 * 179.69938 * 17 16 15 34 34 H 1.09003 * 110.24317 * 316.02160 * 20 19 18 35 35 H 1.09000 * 110.24261 * 77.92906 * 20 19 18 36 36 H 1.08991 * 110.97408 * 92.70156 * 21 20 19 37 37 H 1.09001 * 110.96600 * 216.46775 * 21 20 19 38 38 H 1.09001 * 110.48242 * 143.47445 * 22 21 20 39 39 H 1.08995 * 110.48457 * 265.98821 * 22 21 20 40 40 H 1.07999 * 119.95973 * 179.74103 * 25 18 17 41 41 H 1.08000 * 120.03326 * 179.97438 * 26 25 18 42 42 H 1.07997 * 125.80099 * 179.71671 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.1007 1.6965 -1.2125 5 1 1.2820 2.7465 0.0006 6 1 3.1008 1.6965 1.2125 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0001 9 7 1.3213 -2.3928 -0.0005 10 6 1.8750 -3.6405 -0.0005 11 6 0.8578 -4.5385 -0.0011 12 7 0.9889 -5.9377 -0.0018 13 6 -0.1103 -6.7176 -0.0018 14 8 -1.2157 -6.2104 -0.0017 15 6 0.0273 -8.1869 -0.0031 16 6 -1.1115 -8.9970 -0.0037 17 6 -0.9794 -10.3673 0.0013 18 6 0.2859 -10.9459 -0.0048 19 7 0.4160 -12.3343 -0.0050 20 6 1.6935 -13.0464 -0.1274 21 6 1.3225 -14.4950 -0.5146 22 6 -0.1084 -14.6180 0.0588 23 6 -0.6119 -13.1925 0.1124 24 8 -1.7743 -12.8706 0.2402 25 6 1.4217 -10.1423 -0.0043 26 6 1.2968 -8.7714 -0.0035 27 6 -0.3514 -3.8197 -0.0074 28 7 -0.0715 -2.5409 -0.0010 29 1 -0.4850 0.8400 -0.0004 30 1 2.9302 -3.8708 -0.0001 31 1 1.8705 -6.3422 -0.0023 32 1 -2.0940 -8.5485 -0.0036 33 1 -1.8591 -10.9940 0.0058 34 1 2.3051 -12.5924 -0.9072 35 1 2.2253 -13.0331 0.8240 36 1 1.3211 -14.6213 -1.5972 37 1 1.9953 -15.2099 -0.0408 38 1 -0.7327 -15.2215 -0.6001 39 1 -0.0826 -15.0495 1.0593 40 1 2.4024 -10.5947 -0.0048 41 1 2.1789 -8.1482 -0.0027 42 1 -1.3420 -4.2497 -0.0137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139733539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:36 Heat of formation + Delta-G solvation = 56.319912 kcal Electronic energy + Delta-G solvation = -27423.579179 eV Core-core repulsion = 23370.994616 eV Total energy + Delta-G solvation = -4052.584562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49045 -40.03757 -39.11320 -37.81293 -36.98735 -34.25100 -33.59931 -33.07745 -31.13298 -30.29646 -29.61616 -28.23332 -27.58055 -25.05838 -23.97355 -23.50001 -21.70347 -21.13678 -20.59535 -20.02937 -19.32706 -18.11153 -17.70668 -17.26563 -17.01452 -16.08518 -15.44611 -15.38250 -14.93773 -14.69697 -14.58556 -14.42939 -14.14832 -14.09428 -13.90311 -13.78455 -13.46206 -13.25966 -13.17837 -12.89546 -12.60393 -12.42671 -12.08654 -11.67367 -11.64970 -11.43343 -11.30486 -11.23177 -10.94170 -10.54592 -10.52430 -10.10988 -10.03933 -9.19635 -9.15418 -9.13648 -8.77752 -8.19960 -8.02200 -6.65823 -6.53300 -4.20022 0.73263 1.25414 2.08711 2.34290 2.93699 3.05935 3.10253 3.10454 3.61662 3.62396 3.68427 3.81620 3.90648 3.98982 4.18921 4.36892 4.51529 4.62883 4.71112 4.76384 4.85879 4.87733 5.04514 5.06986 5.11106 5.15365 5.19764 5.33619 5.34136 5.37704 5.85498 5.89099 6.03071 6.25169 6.27968 6.35403 6.52468 6.67566 6.81493 6.93553 6.99739 7.16363 7.27197 7.59141 7.88266 8.21856 8.31116 8.66393 8.89661 9.40447 9.69933 10.42636 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.040281 B = 0.001821 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.942876 B =15375.584746 C =16031.607358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.142 5.142 10 C -0.084 4.084 11 C -0.059 4.059 12 N -0.618 5.618 13 C 0.541 3.459 14 O -0.534 6.534 15 C -0.142 4.142 16 C -0.032 4.032 17 C -0.165 4.165 18 C 0.178 3.822 19 N -0.558 5.558 20 C 0.093 3.907 21 C -0.131 4.131 22 C -0.153 4.153 23 C 0.513 3.487 24 O -0.505 6.505 25 C -0.165 4.165 26 C -0.063 4.063 27 C -0.031 4.031 28 N -0.260 5.260 29 H 0.275 0.725 30 H 0.145 0.855 31 H 0.395 0.605 32 H 0.142 0.858 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.083 -28.233 -0.627 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.090 4.910 10 C -0.235 4.235 11 C -0.165 4.165 12 N -0.260 5.260 13 C 0.328 3.672 14 O -0.412 6.412 15 C -0.146 4.146 16 C -0.052 4.052 17 C -0.185 4.185 18 C 0.083 3.917 19 N -0.282 5.282 20 C -0.029 4.029 21 C -0.169 4.169 22 C -0.193 4.193 23 C 0.303 3.697 24 O -0.380 6.380 25 C -0.186 4.186 26 C -0.082 4.082 27 C -0.207 4.207 28 N -0.091 5.091 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.229 0.771 32 H 0.160 0.840 33 H 0.176 0.824 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.988 -26.357 -0.553 27.035 hybrid contribution 1.537 -0.365 0.020 1.580 sum 7.525 -26.722 -0.534 27.767 Atomic orbital electron populations 1.70210 1.06119 1.28086 1.35194 1.25644 0.95706 1.00258 0.95531 0.85898 0.79137 0.79676 0.79433 1.19178 1.20135 1.19185 1.19817 0.91623 0.80578 1.53535 0.86677 1.44544 1.04067 1.03274 1.39111 1.21243 0.96775 0.85388 1.20128 1.17266 0.94378 0.81156 1.23701 1.42410 1.08082 1.04572 1.70941 1.17970 0.84556 0.85824 0.78829 1.90675 1.25624 1.74525 1.50417 1.20056 0.94051 0.93490 1.06996 1.21205 0.99027 0.92010 0.92913 1.21582 0.97130 0.95479 1.04290 1.17928 0.94733 0.80918 0.98093 1.45743 1.09523 1.04129 1.68779 1.22309 0.85174 0.92349 1.03109 1.22626 0.96044 0.95551 1.02673 1.22349 0.97818 0.94330 1.04828 1.21146 0.84781 0.88642 0.75160 1.90662 1.17751 1.81864 1.47711 1.20609 0.96921 0.93372 1.07664 1.21096 0.96666 0.94157 0.96278 1.24142 0.98113 0.90691 1.07741 1.78255 0.90079 1.15086 1.25716 0.91402 0.83712 0.77100 0.84030 0.82418 0.89218 0.89884 0.89479 0.88479 0.87369 0.87243 0.85305 0.85103 0.80641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.79 11.81 55.49 0.66 -21.13 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 19.07 29.55 -169.99 -5.02 14.05 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.32 -8.63 10.25 -14.82 -0.15 -8.78 16 8 H 0.12 2.72 7.83 -52.48 -0.41 2.31 16 9 N -0.14 -3.96 3.74 -11.41 -0.04 -4.01 16 10 C -0.08 -2.01 11.49 -16.38 -0.19 -2.20 16 11 C -0.06 -1.40 6.90 -83.86 -0.58 -1.98 16 12 N -0.62 -11.45 5.41 -10.92 -0.06 -11.51 16 13 C 0.54 10.23 7.73 -12.45 -0.10 10.13 16 14 O -0.53 -12.14 13.48 5.26 0.07 -12.07 16 15 C -0.14 -2.09 5.88 -104.95 -0.62 -2.71 16 16 C -0.03 -0.46 9.58 -39.22 -0.38 -0.84 16 17 C -0.16 -2.17 9.26 -39.46 -0.37 -2.53 16 18 C 0.18 1.95 6.60 -83.73 -0.55 1.40 16 19 N -0.56 -4.73 3.12 -112.26 -0.35 -5.08 16 20 C 0.09 0.36 6.24 -3.13 -0.02 0.34 16 21 C -0.13 -0.27 7.18 -25.10 -0.18 -0.45 16 22 C -0.15 -0.65 6.86 -26.74 -0.18 -0.83 16 23 C 0.51 4.76 7.92 -10.86 -0.09 4.68 16 24 O -0.51 -6.71 14.79 5.55 0.08 -6.62 16 25 C -0.17 -1.57 9.38 -39.46 -0.37 -1.94 16 26 C -0.06 -0.70 9.53 -39.22 -0.37 -1.07 16 27 C -0.03 -0.85 10.85 -17.03 -0.18 -1.03 16 28 N -0.26 -7.72 10.39 30.80 0.32 -7.40 16 29 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.15 2.85 8.06 -52.49 -0.42 2.42 16 31 H 0.39 5.59 6.84 -40.82 -0.28 5.31 16 32 H 0.14 2.10 7.64 -52.48 -0.40 1.70 16 33 H 0.16 2.20 5.23 -52.48 -0.27 1.93 16 34 H 0.09 0.27 7.68 -51.93 -0.40 -0.13 16 35 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.13 0.81 6.99 -52.49 -0.37 0.45 16 41 H 0.13 1.15 6.39 -52.49 -0.34 0.82 16 42 H 0.18 4.74 5.91 -52.49 -0.31 4.43 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -37.24 356.37 -7.84 -45.08 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -4.45 Total: 10.05 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -4.42 Total: -6.72 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.52 Total: -49.13 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.15 Total: -18.70 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.24 -7.84 -45.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139733539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.402 kcal (2) G-P(sol) polarization free energy of solvation -37.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds