Wall clock time and date at job start Wed Apr 1 2020 00:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65606 * 119.99917 * 2 1 4 4 O 1.42097 * 106.39861 * 311.45849 * 3 2 1 5 5 O 1.42104 * 106.40187 * 178.54019 * 3 2 1 6 6 C 1.76197 * 107.21586 * 65.00153 * 3 2 1 7 7 C 1.38382 * 119.92966 * 90.00355 * 6 3 2 8 8 C 1.38336 * 120.29414 * 180.27560 * 7 6 3 9 9 C 1.37978 * 120.14213 * 359.48159 * 8 7 6 10 10 C 1.50698 * 120.07293 * 180.23364 * 9 8 7 11 11 C 1.39550 * 119.85369 * 0.51848 * 9 8 7 12 12 C 1.47848 * 120.14694 * 179.72121 * 11 9 8 13 13 O 1.21553 * 119.99995 * 353.76626 * 12 11 9 14 14 N 1.34776 * 120.00445 * 173.76353 * 12 11 9 15 15 C 1.46499 * 120.00029 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46853 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47130 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47325 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99489 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00050 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99902 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00020 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47220 * 89.99992 * 22 20 18 24 24 H 1.48505 * 109.47108 * 209.99878 * 22 20 18 25 25 H 1.48500 * 109.47367 * 329.99780 * 22 20 18 26 26 C 1.37939 * 119.92647 * 270.01878 * 6 3 2 27 27 H 1.08998 * 109.46783 * 299.99780 * 1 2 3 28 28 H 1.08999 * 109.47028 * 60.00190 * 1 2 3 29 29 H 1.08999 * 109.46605 * 180.02562 * 1 2 3 30 30 H 0.97002 * 120.00348 * 180.02562 * 2 1 3 31 31 H 1.07998 * 119.85183 * 359.97438 * 7 6 3 32 32 H 1.08002 * 119.92768 * 179.72659 * 8 7 6 33 33 H 1.09002 * 109.47750 * 263.68913 * 10 9 8 34 34 H 1.09000 * 109.47123 * 23.69210 * 10 9 8 35 35 H 1.09000 * 109.47071 * 143.68402 * 10 9 8 36 36 H 0.97004 * 119.99778 * 0.02562 * 14 12 11 37 37 H 1.09002 * 109.46767 * 299.99429 * 15 14 12 38 38 H 1.08991 * 109.47139 * 59.99783 * 15 14 12 39 39 H 1.09000 * 109.47143 * 300.00065 * 16 15 14 40 40 H 1.09003 * 109.47226 * 59.99785 * 16 15 14 41 41 H 1.08999 * 109.46857 * 300.00173 * 17 16 15 42 42 H 1.08999 * 109.46556 * 59.99852 * 17 16 15 43 43 H 0.97003 * 119.99830 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.07485 * 359.95946 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1003 0.0347 6 6 1.9378 2.2414 1.5254 7 6 2.7400 2.0144 2.6299 8 6 2.4646 2.6398 3.8327 9 6 1.3933 3.5031 3.9354 10 6 1.0979 4.1876 5.2451 11 6 0.5803 3.7365 2.8254 12 6 -0.5731 4.6556 2.9299 13 8 -0.8832 5.1214 4.0090 14 7 -1.2806 4.9771 1.8288 15 6 -2.4231 5.8883 1.9323 16 6 -3.0461 6.0843 0.5486 17 6 -4.2396 7.0354 0.6568 18 6 -4.8529 7.2289 -0.7061 19 1 -4.4335 6.7237 -1.5636 20 6 -5.9499 8.0501 -0.8581 21 7 -6.4854 8.2186 -2.0474 22 14 -6.6756 8.9233 0.6252 23 1 -6.0201 10.2454 0.7910 24 1 -8.1340 9.1161 0.4216 25 1 -6.4500 8.1028 1.8422 26 6 0.8605 3.0982 1.6160 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.9501 -0.8400 -0.0004 31 1 3.5818 1.3422 2.5538 32 1 3.0920 2.4548 4.6921 33 1 0.3362 3.6254 5.7853 34 1 2.0076 4.2347 5.8437 35 1 0.7363 5.1979 5.0536 36 1 -1.0333 4.6051 0.9677 37 1 -3.1659 5.4643 2.6080 38 1 -2.0868 6.8501 2.3193 39 1 -2.3035 6.5079 -0.1275 40 1 -3.3824 5.1222 0.1620 41 1 -4.9821 6.6112 1.3328 42 1 -3.9036 7.9974 1.0436 43 1 -7.2570 8.7966 -2.1544 44 1 0.2354 3.2749 0.7532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171593867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:11 Heat of formation + Delta-G solvation = -93.224356 kcal Electronic energy + Delta-G solvation = -26918.709422 eV Core-core repulsion = 22962.791334 eV Total energy + Delta-G solvation = -3955.918088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.68526 -38.66380 -37.61765 -36.22340 -35.76951 -35.42851 -33.68879 -33.08569 -32.12692 -31.06960 -28.02398 -27.02355 -26.42780 -24.40399 -23.03404 -22.19541 -21.00649 -20.46865 -19.70491 -18.57993 -18.00094 -16.94903 -16.85870 -16.57603 -16.10012 -15.78955 -15.65125 -15.37530 -14.87511 -14.60206 -14.48084 -14.20322 -14.14260 -13.62073 -13.54075 -13.27134 -12.74647 -12.66494 -12.53900 -12.50122 -12.48423 -12.39336 -12.15624 -12.04024 -12.02532 -11.95392 -11.28535 -11.11423 -10.92219 -10.19837 -10.10523 -9.99519 -9.79386 -9.62303 -9.58458 -9.54559 -9.24516 -8.95078 -8.56865 -6.07291 -4.06213 -0.05788 0.27106 0.52048 2.37664 2.68689 3.09748 3.24339 3.29903 3.37547 3.40999 3.42013 3.88910 4.22828 4.30522 4.40526 4.42945 4.58044 4.69671 4.83388 5.01051 5.02510 5.17168 5.26538 5.27730 5.34251 5.35972 5.44733 5.48697 5.51759 5.58900 5.59304 5.84700 5.95287 6.06072 6.23379 6.33743 6.39559 6.43728 6.61721 6.74541 7.19664 7.33111 7.45786 7.74441 8.11609 8.49216 8.96880 9.54701 11.05960 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012774 B = 0.002639 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.424157 B =10607.030406 C =12333.404019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.120 6.120 3 S 2.698 3.302 4 O -0.949 6.949 5 O -0.958 6.958 6 C -0.694 4.694 7 C 0.006 3.994 8 C -0.151 4.151 9 C 0.032 3.968 10 C -0.131 4.131 11 C -0.155 4.155 12 C 0.553 3.447 13 O -0.532 6.532 14 N -0.720 5.720 15 C 0.114 3.886 16 C -0.116 4.116 17 C -0.010 4.010 18 C -0.523 4.523 19 H 0.073 0.927 20 C 0.067 3.933 21 N -0.902 5.902 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 C 0.015 3.985 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.419 0.581 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.400 0.600 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.019 0.981 42 H 0.014 0.986 43 H 0.263 0.737 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.898 -19.324 11.154 29.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.880 5.880 3 S 2.786 3.214 4 O -0.938 6.938 5 O -0.948 6.948 6 C -0.780 4.780 7 C -0.014 4.014 8 C -0.170 4.170 9 C 0.031 3.969 10 C -0.187 4.187 11 C -0.159 4.159 12 C 0.339 3.661 13 O -0.411 6.411 14 N -0.370 5.370 15 C -0.008 4.008 16 C -0.154 4.154 17 C -0.048 4.048 18 C -0.561 4.561 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.541 5.541 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.189 1.189 26 C -0.005 4.005 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.253 0.747 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.235 0.765 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 19.883 -18.392 11.153 29.292 hybrid contribution -0.503 0.028 0.900 1.032 sum 19.381 -18.364 12.053 29.294 Atomic orbital electron populations 1.21567 0.78044 1.04619 1.02454 1.55305 1.16419 1.24271 1.91987 1.01869 0.72922 0.72793 0.73800 1.93629 1.78548 1.68293 1.53362 1.93598 1.30673 1.83453 1.87112 1.30844 1.07691 1.17158 1.22337 1.21065 0.95178 0.94239 0.90871 1.21218 0.98620 0.98707 0.98452 1.20436 0.90722 0.90626 0.95137 1.21259 1.01887 1.03354 0.92200 1.20024 0.98982 1.02217 0.94656 1.18107 0.82335 0.81054 0.84556 1.90728 1.68706 1.54657 1.27029 1.46165 1.32045 1.48650 1.10164 1.21727 0.86361 0.92618 1.00118 1.21740 0.99141 1.01338 0.93150 1.19495 0.92895 0.94161 0.98256 1.21093 1.13243 1.28497 0.93225 0.90933 1.25027 0.96516 0.96212 0.95711 1.69913 1.23364 1.38579 1.22262 0.86777 0.78278 0.80419 0.83805 1.20252 1.21380 1.18930 1.21109 0.92706 0.89866 0.96812 0.92076 0.90782 0.89650 0.74697 0.83776 0.84237 0.89713 0.91834 0.87811 0.76499 0.91434 0.91453 0.91908 0.91939 0.96308 0.96739 0.92680 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.39 11.14 59.85 0.67 1.06 16 2 N -1.12 -6.20 6.19 -16.63 -0.10 -6.30 16 3 S 2.70 23.59 5.74 -107.50 -0.62 22.98 16 4 O -0.95 -11.40 17.00 -57.17 -0.97 -12.37 16 5 O -0.96 -10.40 17.27 -57.17 -0.99 -11.39 16 6 C -0.69 -6.11 5.94 -39.64 -0.24 -6.35 16 7 C 0.01 0.05 9.52 -39.49 -0.38 -0.33 16 8 C -0.15 -1.19 9.66 -39.64 -0.38 -1.57 16 9 C 0.03 0.32 5.91 -104.23 -0.62 -0.30 16 10 C -0.13 -1.25 8.73 36.00 0.31 -0.93 16 11 C -0.15 -1.75 5.87 -104.97 -0.62 -2.37 16 12 C 0.55 7.60 7.70 -12.33 -0.09 7.51 16 13 O -0.53 -8.60 13.35 5.32 0.07 -8.53 16 14 N -0.72 -9.63 5.51 -61.25 -0.34 -9.97 16 15 C 0.11 1.81 5.67 -4.04 -0.02 1.78 16 16 C -0.12 -2.11 5.27 -26.73 -0.14 -2.25 16 17 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 18 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 19 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 22 Si 0.88 21.54 27.47 -169.99 -4.67 16.88 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 26 C 0.02 0.15 9.00 -39.18 -0.35 -0.20 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.42 1.40 8.96 -34.47 -0.31 1.09 16 31 H 0.14 0.82 7.61 -52.49 -0.40 0.42 16 32 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.45 8.04 -51.93 -0.42 0.03 16 35 H 0.10 1.23 5.86 -51.93 -0.30 0.93 16 36 H 0.40 4.48 6.55 -40.82 -0.27 4.21 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 42 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.14 1.24 6.01 -52.49 -0.32 0.93 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -36.64 378.05 -9.71 -46.35 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.17 Total: 0.91 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -2.40 Total: -17.40 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.33 Total: -43.13 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.89 Total: -32.29 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 16 Polarization: 23.59 SS G_CDS: -0.62 Total: 22.98 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.64 -9.71 -46.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171593867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.873 kcal (2) G-P(sol) polarization free energy of solvation -36.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds