Wall clock time and date at job start Wed Apr 1 2020 00:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65606 * 119.99917 * 2 1 4 4 O 1.42097 * 106.39861 * 311.45849 * 3 2 1 5 5 O 1.42104 * 106.40187 * 178.54019 * 3 2 1 6 6 C 1.76197 * 107.21586 * 65.00153 * 3 2 1 7 7 C 1.38382 * 119.92966 * 90.00355 * 6 3 2 8 8 C 1.38336 * 120.29414 * 180.27560 * 7 6 3 9 9 C 1.37978 * 120.14213 * 359.48159 * 8 7 6 10 10 C 1.50698 * 120.07293 * 180.23364 * 9 8 7 11 11 C 1.39550 * 119.85369 * 0.51848 * 9 8 7 12 12 C 1.47848 * 120.14694 * 179.72121 * 11 9 8 13 13 O 1.21553 * 119.99995 * 353.76626 * 12 11 9 14 14 N 1.34776 * 120.00445 * 173.76353 * 12 11 9 15 15 C 1.46499 * 120.00029 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46853 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47130 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47325 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99489 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00050 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99902 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00020 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47220 * 89.99992 * 22 20 18 24 24 H 1.48505 * 109.47108 * 209.99878 * 22 20 18 25 25 H 1.48500 * 109.47367 * 329.99780 * 22 20 18 26 26 C 1.37939 * 119.92647 * 270.01878 * 6 3 2 27 27 H 1.08998 * 109.46783 * 299.99780 * 1 2 3 28 28 H 1.08999 * 109.47028 * 60.00190 * 1 2 3 29 29 H 1.08999 * 109.46605 * 180.02562 * 1 2 3 30 30 H 0.97002 * 120.00348 * 180.02562 * 2 1 3 31 31 H 1.07998 * 119.85183 * 359.97438 * 7 6 3 32 32 H 1.08002 * 119.92768 * 179.72659 * 8 7 6 33 33 H 1.09002 * 109.47750 * 263.68913 * 10 9 8 34 34 H 1.09000 * 109.47123 * 23.69210 * 10 9 8 35 35 H 1.09000 * 109.47071 * 143.68402 * 10 9 8 36 36 H 0.97004 * 119.99778 * 0.02562 * 14 12 11 37 37 H 1.09002 * 109.46767 * 299.99429 * 15 14 12 38 38 H 1.08991 * 109.47139 * 59.99783 * 15 14 12 39 39 H 1.09000 * 109.47143 * 300.00065 * 16 15 14 40 40 H 1.09003 * 109.47226 * 59.99785 * 16 15 14 41 41 H 1.08999 * 109.46857 * 300.00173 * 17 16 15 42 42 H 1.08999 * 109.46556 * 59.99852 * 17 16 15 43 43 H 0.97003 * 119.99830 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.07485 * 359.95946 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1003 0.0347 6 6 1.9378 2.2414 1.5254 7 6 2.7400 2.0144 2.6299 8 6 2.4646 2.6398 3.8327 9 6 1.3933 3.5031 3.9354 10 6 1.0979 4.1876 5.2451 11 6 0.5803 3.7365 2.8254 12 6 -0.5731 4.6556 2.9299 13 8 -0.8832 5.1214 4.0090 14 7 -1.2806 4.9771 1.8288 15 6 -2.4231 5.8883 1.9323 16 6 -3.0461 6.0843 0.5486 17 6 -4.2396 7.0354 0.6568 18 6 -4.8529 7.2289 -0.7061 19 1 -4.4335 6.7237 -1.5636 20 6 -5.9499 8.0501 -0.8581 21 7 -6.4854 8.2186 -2.0474 22 14 -6.6756 8.9233 0.6252 23 1 -6.0201 10.2454 0.7910 24 1 -8.1340 9.1161 0.4216 25 1 -6.4500 8.1028 1.8422 26 6 0.8605 3.0982 1.6160 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.9501 -0.8400 -0.0004 31 1 3.5818 1.3422 2.5538 32 1 3.0920 2.4548 4.6921 33 1 0.3362 3.6254 5.7853 34 1 2.0076 4.2347 5.8437 35 1 0.7363 5.1979 5.0536 36 1 -1.0333 4.6051 0.9677 37 1 -3.1659 5.4643 2.6080 38 1 -2.0868 6.8501 2.3193 39 1 -2.3035 6.5079 -0.1275 40 1 -3.3824 5.1222 0.1620 41 1 -4.9821 6.6112 1.3328 42 1 -3.9036 7.9974 1.0436 43 1 -7.2570 8.7966 -2.1544 44 1 0.2354 3.2749 0.7532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171593867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:10 Heat of formation + Delta-G solvation = -121.479254 kcal Electronic energy + Delta-G solvation = -26919.934647 eV Core-core repulsion = 22962.791334 eV Total energy + Delta-G solvation = -3957.143312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.58416 -39.57423 -38.41019 -37.12238 -37.01723 -35.91142 -35.30928 -34.00755 -33.54491 -32.27034 -29.21370 -28.24412 -26.86042 -25.48279 -24.33229 -23.04515 -22.26098 -21.75699 -20.52318 -19.43234 -18.88607 -18.68522 -17.80663 -17.28741 -16.99622 -16.83728 -16.61427 -16.34690 -16.10367 -15.72038 -15.54722 -15.27145 -14.78012 -14.67042 -14.62636 -14.49183 -13.82496 -13.81264 -13.62246 -13.38492 -13.32443 -13.24471 -13.23113 -13.15879 -12.92791 -12.72334 -12.69214 -12.55289 -11.99907 -11.88140 -11.76894 -11.60686 -11.33309 -10.79561 -10.76039 -10.57096 -10.43244 -10.23591 -10.04424 -8.28918 -6.33125 -0.73478 -0.46412 -0.20360 1.37507 1.38743 1.50625 1.56917 2.00574 2.05496 2.36695 2.44048 2.71711 3.06836 3.16892 3.54222 3.54881 3.70853 3.97018 4.06615 4.16997 4.18692 4.21640 4.32335 4.48626 4.53675 4.64533 4.67739 4.75318 4.77355 4.87077 4.87390 4.89074 4.91662 5.01579 5.02346 5.14159 5.30279 5.41995 5.48027 5.55074 5.62743 5.65245 6.09910 6.27884 6.41054 6.75266 7.06552 7.31699 8.87676 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012774 B = 0.002639 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.424157 B =10607.030406 C =12333.404019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -1.107 6.107 3 S 2.717 3.283 4 O -0.985 6.985 5 O -0.979 6.979 6 C -0.694 4.694 7 C 0.010 3.990 8 C -0.143 4.143 9 C 0.021 3.979 10 C -0.127 4.127 11 C -0.173 4.173 12 C 0.551 3.449 13 O -0.560 6.560 14 N -0.716 5.716 15 C 0.128 3.872 16 C -0.104 4.104 17 C -0.010 4.010 18 C -0.532 4.532 19 H 0.036 0.964 20 C 0.004 3.996 21 N -0.951 5.951 22 Si 0.949 3.051 23 H -0.268 1.268 24 H -0.285 1.285 25 H -0.245 1.245 26 C 0.010 3.990 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.431 0.569 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.410 0.590 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.024 0.976 42 H 0.020 0.980 43 H 0.266 0.734 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.292 -20.748 13.419 32.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.870 5.870 3 S 2.805 3.195 4 O -0.975 6.975 5 O -0.969 6.969 6 C -0.781 4.781 7 C -0.010 4.010 8 C -0.161 4.161 9 C 0.020 3.980 10 C -0.183 4.183 11 C -0.177 4.177 12 C 0.340 3.660 13 O -0.441 6.441 14 N -0.368 5.368 15 C 0.004 3.996 16 C -0.142 4.142 17 C -0.048 4.048 18 C -0.570 4.570 19 H 0.054 0.946 20 C -0.193 4.193 21 N -0.592 5.592 22 Si 0.772 3.228 23 H -0.193 1.193 24 H -0.211 1.211 25 H -0.169 1.169 26 C -0.010 4.010 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.268 0.732 31 H 0.188 0.812 32 H 0.191 0.809 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.247 0.753 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 21.311 -19.850 13.405 32.060 hybrid contribution -0.872 0.368 0.131 0.956 sum 20.438 -19.483 13.536 31.313 Atomic orbital electron populations 1.21773 0.77318 1.06285 1.02333 1.54986 1.16742 1.23692 1.91605 1.01103 0.72246 0.72856 0.73280 1.93586 1.79090 1.69765 1.55081 1.93563 1.32153 1.83837 1.87378 1.30839 1.07585 1.17030 1.22652 1.21465 0.95239 0.93909 0.90341 1.21555 0.97813 0.97243 0.99528 1.20636 0.91279 0.91281 0.94798 1.21187 1.03011 1.01612 0.92503 1.19885 0.98881 1.02961 0.95975 1.18490 0.82662 0.80927 0.83908 1.90719 1.69615 1.55821 1.27957 1.46020 1.31476 1.48357 1.10940 1.21373 0.87044 0.93021 0.98120 1.21524 0.97573 1.00385 0.94760 1.19451 0.94489 0.95638 0.95263 1.21472 1.13269 1.27665 0.94553 0.94579 1.26004 0.97149 0.97270 0.98882 1.70067 1.24307 1.39974 1.24860 0.85676 0.77326 0.79461 0.80300 1.19345 1.21082 1.16854 1.21173 0.93275 0.90011 0.96528 0.91554 0.91706 0.87122 0.73187 0.81247 0.80926 0.90003 0.89113 0.90497 0.75313 0.91588 0.91932 0.92008 0.91534 0.95778 0.96169 0.92514 0.83311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 11.14 127.77 1.42 1.98 16 2 N -1.11 -10.28 6.19 -206.54 -1.28 -11.56 16 3 S 2.72 44.21 5.74 -56.49 -0.32 43.89 16 4 O -0.99 -23.45 17.00 -128.00 -2.18 -25.62 16 5 O -0.98 -19.74 17.27 -128.00 -2.21 -21.95 16 6 C -0.69 -11.00 5.94 22.23 0.13 -10.87 16 7 C 0.01 0.12 9.52 22.33 0.21 0.33 16 8 C -0.14 -1.78 9.66 22.23 0.21 -1.56 16 9 C 0.02 0.39 5.91 -19.61 -0.12 0.27 16 10 C -0.13 -2.24 8.73 71.24 0.62 -1.62 16 11 C -0.17 -3.76 5.87 -20.09 -0.12 -3.88 16 12 C 0.55 14.99 7.70 86.79 0.67 15.66 16 13 O -0.56 -18.11 13.35 -3.88 -0.05 -18.16 16 14 N -0.72 -18.86 5.51 -465.97 -2.57 -21.42 16 15 C 0.13 3.95 5.67 86.38 0.49 4.44 16 16 C -0.10 -3.77 5.27 30.60 0.16 -3.61 16 17 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 18 C -0.53 -30.22 9.66 25.60 0.25 -29.97 16 19 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 20 C 0.00 0.22 5.47 84.65 0.46 0.68 16 21 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 22 Si 0.95 44.17 27.47 68.60 1.88 46.05 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.25 -10.55 6.54 99.48 0.65 -9.89 16 26 C 0.01 0.19 9.00 22.53 0.20 0.39 16 27 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.66 8.10 -2.39 -0.02 0.65 16 29 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.43 1.94 8.96 -96.74 -0.87 1.07 16 31 H 0.17 1.27 7.61 -2.91 -0.02 1.25 16 32 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.04 8.04 -2.39 -0.02 1.03 16 35 H 0.08 1.81 5.86 -2.39 -0.01 1.80 16 36 H 0.41 9.02 6.55 -92.71 -0.61 8.42 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 42 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 43 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.15 2.51 6.01 -2.91 -0.02 2.49 16 Total: -1.00 -80.26 378.05 -2.19 -82.45 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.49 Total: 13.78 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 4.72 Total: -28.09 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -3.54 Total: -92.34 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -4.44 Total: -65.74 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Atomic # 16 Polarization: 44.21 SS G_CDS: -0.32 Total: 43.89 kcal Total: -80.26 -2.19 -82.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171593867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.030 kcal (2) G-P(sol) polarization free energy of solvation -80.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds